Cow genome map
| Conread name: | Ss1.1-rpigca0_007986.5 |
| Conread position: | 1-188 |
| Cow position: | chr21:40271444-40271628 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 80, 69 |
| Conread position: | 1-252 |
| Cow position: | chr21:27282629-27282372 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 33, 165 |
| Conread position: | 1-441 |
| Cow position: | chr21:36714862-36714426 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 69 |
| Conread position: | 1-470 |
| Cow position: | chr21:359249-358778 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 9 |
| Conread position: | 1-471 |
| Cow position: | chr21:6699345-6699805 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 313 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 276, 34 |
| Conread position: | 1-471 |
| Cow position: | chr21:9891825-9891369 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 370, 31 |
| Conread position: | 1-485 |
| Cow position: | chr21:23812108-23811655 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-505 |
| Cow position: | chr21:47948342-47947840 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 69 |
| Conread position: | 1-507 |
| Cow position: | chr21:2416461-2415963 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 461, 69 |
| Conread position: | 1-507 |
| Cow position: | chr21:20744532-20745018 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 334 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 250, 75 |
| Conread position: | 1-514 |
| Cow position: | chr21:2769228-2769736 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 75 |
| Conread position: | 1-515 |
| Cow position: | chr21:146156-145630 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 69 |
| Conread position: | 1-515 |
| Cow position: | chr21:3778999-3778484 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 76 |
| Conread position: | 1-515 |
| Cow position: | chr21:4183758-4183258 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 68 |
| Conread position: | 1-515 |
| Cow position: | chr21:4589758-4590247 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 75 |
| Conread position: | 1-515 |
| Cow position: | chr21:7267312-7267822 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 69 |
| Conread position: | 1-515 |
| Cow position: | chr21:10566906-10566389 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 355, 69 |
| Conread position: | 1-515 |
| Cow position: | chr21:10850313-10849790 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 69 |
| Conread position: | 1-515 |
| Cow position: | chr21:30599688-30600203 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 370, 6 |
| Conread position: | 1-515 |
| Cow position: | chr21:31559422-31559937 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 248, 69 |
| Conread position: | 1-515 |
| Cow position: | chr21:33251625-33251102 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 69 |
| Conread position: | 2-463 |
| Cow position: | chr21:30562034-30561566 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 68 |
| Conread position: | 2-465 |
| Cow position: | chr21:2674396-2674875 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 77 |
| Conread position: | 2-469 |
| Cow position: | chr21:21031959-21031498 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 299 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 211, 35 |
| Conread position: | 2-515 |
| Cow position: | chr21:1291959-1292464 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 347, 37 |
| Conread position: | 2-515 |
| Cow position: | chr21:2883516-2884024 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 367, 68 |
| Conread position: | 3-245 |
| Cow position: | chr21:6339797-6339558 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 3-245 |
| Cow position: | chr21:8678129-8678368 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 3-335 |
| Cow position: | chr21:4457057-4456729 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 60 |
| Conread position: | 3-454 |
| Cow position: | chr21:2788761-2789208 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 68 |
| Conread position: | 3-487 |
| Cow position: | chr21:2529896-2530386 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 69 |
| Conread position: | 3-487 |
| Cow position: | chr21:3426716-3426226 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 284, 75 |
| Conread position: | 3-487 |
| Cow position: | chr21:4077070-4076587 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 359, 67 |
| Conread position: | 3-489 |
| Cow position: | chr21:11505818-11505325 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 67 |
| Conread position: | 3-489 |
| Cow position: | chr21:13123773-13124258 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 354, 73 |
| Conread position: | 3-498 |
| Cow position: | chr21:47939707-47939212 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 69 |
| Conread position: | 3-499 |
| Cow position: | chr21:4222456-4222968 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 67 |
| Conread position: | 3-499 |
| Cow position: | chr21:34258999-34259487 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 57 |
| Conread position: | 3-499 |
| Cow position: | chr21:34293247-34292745 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 67 |
| Conread position: | 3-506 |
| Cow position: | chr21:2716451-2716946 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 68 |
| Conread position: | 3-506 |
| Cow position: | chr21:4090880-4090372 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 67 |
| Conread position: | 3-506 |
| Cow position: | chr21:35596599-35596104 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 67 |
| Conread position: | 3-515 |
| Cow position: | chr21:2476296-2476797 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 265, 67 |
| Conread position: | 3-515 |
| Cow position: | chr21:2510882-2510367 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 67 |
| Conread position: | 3-515 |
| Cow position: | chr21:11453425-11453943 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 366, 67 |
| Conread position: | 3-515 |
| Cow position: | chr21:12055770-12056287 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 366, 67 |
| Conread position: | 3-515 |
| Cow position: | chr21:26638234-26638746 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 67 |
| Conread position: | 3-515 |
| Cow position: | chr21:33755535-33755001 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 67 |
| Conread position: | 3-515 |
| Cow position: | chr21:37045141-37044632 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 66 |
| Conread position: | 3-515 |
| Cow position: | chr21:46915819-46915302 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 67 |
| Conread position: | 3-516 |
| Cow position: | chr21:39425294-39424780 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 68 |
| Conread position: | 4-403 |
| Cow position: | chr21:2541184-2541583 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 66 |
| Conread position: | 4-515 |
| Cow position: | chr21:26818791-26819303 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 355, 66 |
| Conread position: | 5-281 |
| Cow position: | chr21:21914514-21914241 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 208, 71 |
| Conread position: | 5-513 |
| Cow position: | chr21:48116332-48115820 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 65 |
| Conread position: | 6-476 |
| Cow position: | chr21:25992405-25992867 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 314 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 306, 70 |
| Conread position: | 6-488 |
| Cow position: | chr21:32517117-32516660 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 302 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 56, 67 |
| Conread position: | 7-486 |
| Cow position: | chr21:3615519-3615036 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 63 |
| Conread position: | 7-506 |
| Cow position: | chr21:992802-993302 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 319 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 255, 53 |
| Conread position: | 10-487 |
| Cow position: | chr21:216524-216053 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 314 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 121, 5 |
| Conread position: | 33-516 |
| Cow position: | chr21:21517391-21516923 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 313 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 233, 43 |
| Conread position: | 34-515 |
| Cow position: | chr21:27708963-27708472 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 36 |
| Conread position: | 81-516 |
| Cow position: | chr21:1191202-1190751 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 77 |
| Conread position: | 102-513 |
| Cow position: | chr21:23860914-23860495 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 22 |
| Conread position: | 103-515 |
| Cow position: | chr21:17573053-17572640 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 266, 55 |
| Conread position: | 135-366 |
| Cow position: | chr21:27843-27625 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 145-515 |
| Cow position: | chr21:2502019-2501647 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 15 |
| Conread position: | 156-515 |
| Cow position: | chr21:28529463-28529832 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 179-515 |
| Cow position: | chr21:40271762-40272101 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 240 |
| Conread position: | 182-486 |
| Cow position: | chr21:445183-444883 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 30, 106 |
| Conread position: | 200-515 |
| Cow position: | chr21:34054877-34055203 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 13, 61 |
| Conread position: | 229-486 |
| Cow position: | chr21:5016020-5016289 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 349-515 |
| Cow position: | chr21:41953059-41952900 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 49, 8 |
Show alignments to all cow chromosomes.