Cow genome map

Conread name: Ss1.1-rpigca0_007986.5

Conread position: 1-156
Cow position: chr22:13773035-13772884 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 20, 0

Conread position: 1-271
Cow position: chr22:525635-525881 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 186
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 58, 0

Conread position: 1-281
Cow position: chr22:36274869-36274592 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 192
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 276, 47

Conread position: 1-290
Cow position: chr22:13917563-13917278 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 31

Conread position: 1-328
Cow position: chr22:27386371-27386698 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 267, 69

Conread position: 1-396
Cow position: chr22:34598727-34598343 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 20

Conread position: 1-465
Cow position: chr22:18816325-18816792 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 280, 69

Conread position: 1-471
Cow position: chr22:36861470-36861947 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 280, 69

Conread position: 1-507
Cow position: chr22:44352897-44353402 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 267, 69

Conread position: 1-512
Cow position: chr22:32347921-32348422 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 23

Conread position: 1-513
Cow position: chr22:7277581-7277063 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 69

Conread position: 1-513
Cow position: chr22:8136142-8136667 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 277, 75

Conread position: 1-515
Cow position: chr22:293100-293615 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 330
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 196, 61

Conread position: 1-515
Cow position: chr22:327099-327611 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 69

Conread position: 1-515
Cow position: chr22:560645-561161 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 281, 69

Conread position: 1-515
Cow position: chr22:1293436-1293951 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 60

Conread position: 1-515
Cow position: chr22:5308162-5307654 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 267, 69

Conread position: 1-515
Cow position: chr22:5932937-5933433 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 466, 60

Conread position: 1-515
Cow position: chr22:6503617-6504110 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 29

Conread position: 1-515
Cow position: chr22:11031020-11030524 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 75

Conread position: 1-515
Cow position: chr22:19143639-19144160 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 281, 75

Conread position: 1-515
Cow position: chr22:21589384-21588876 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 69

Conread position: 1-515
Cow position: chr22:31313401-31312882 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 370, 69

Conread position: 1-515
Cow position: chr22:31334973-31335493 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 265, 69

Conread position: 1-515
Cow position: chr22:33351234-33350705 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 168

Conread position: 1-515
Cow position: chr22:34168392-34167869 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 69

Conread position: 1-515
Cow position: chr22:39469463-39469979 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 265, 69

Conread position: 1-515
Cow position: chr22:42991232-42990713 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 276, 69

Conread position: 1-515
Cow position: chr22:44609656-44609181 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 427, 52

Conread position: 1-515
Cow position: chr22:44934039-44933517 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 60

Conread position: 2-282
Cow position: chr22:15313894-15314166 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 200
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 30, 61

Conread position: 2-353
Cow position: chr22:11782469-11782821 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 228
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 49, 146

Conread position: 2-514
Cow position: chr22:17328680-17329198 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 269, 68

Conread position: 2-516
Cow position: chr22:870807-871296 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 332
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 260, 60

Conread position: 3-211
Cow position: chr22:6020720-6020513 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 117
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 67, 0

Conread position: 3-214
Cow position: chr22:20240783-20240991 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 152
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 67, 0

Conread position: 3-228
Cow position: chr22:46547606-46547828 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 166
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 69, 0

Conread position: 3-231
Cow position: chr22:36533685-36533904 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 167
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 57, 0

Conread position: 3-281
Cow position: chr22:537159-536884 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 67

Conread position: 3-281
Cow position: chr22:12731793-12732061 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 213
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 28, 73

Conread position: 3-329
Cow position: chr22:27284102-27283781 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 67

Conread position: 3-332
Cow position: chr22:36183816-36183488 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 257, 36

Conread position: 3-442
Cow position: chr22:32485294-32485715 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 367, 67

Conread position: 3-465
Cow position: chr22:36736821-36736364 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 342, 69

Conread position: 3-486
Cow position: chr22:37265512-37265020 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 268, 67

Conread position: 3-487
Cow position: chr22:1319455-1318962 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 264, 73

Conread position: 3-487
Cow position: chr22:46853401-46852910 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 69

Conread position: 3-489
Cow position: chr22:1878850-1878365 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 274, 67

Conread position: 3-505
Cow position: chr22:46635651-46636144 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 262, 30

Conread position: 3-506
Cow position: chr22:10909775-10910302 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 323

Conread position: 3-506
Cow position: chr22:39882118-39882622 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 67

Conread position: 3-506
Cow position: chr22:41419637-41420134 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 364, 36

Conread position: 3-506
Cow position: chr22:44489945-44489436 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 366, 67

Conread position: 3-513
Cow position: chr22:1321665-1321167 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 267, 67

Conread position: 3-515
Cow position: chr22:693684-693179 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 274, 67

Conread position: 3-515
Cow position: chr22:3278296-3278812 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 276, 73

Conread position: 3-515
Cow position: chr22:3306677-3307173 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 18

Conread position: 3-515
Cow position: chr22:5233247-5233759 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 366, 67

Conread position: 3-515
Cow position: chr22:10546703-10546188 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 366, 67

Conread position: 3-515
Cow position: chr22:15851388-15850883 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 67

Conread position: 3-515
Cow position: chr22:16200531-16200032 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 366, 67

Conread position: 3-515
Cow position: chr22:24949888-24949367 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 272, 73

Conread position: 3-515
Cow position: chr22:27309715-27310239 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 256, 67

Conread position: 3-515
Cow position: chr22:35672298-35672818 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 36

Conread position: 4-486
Cow position: chr22:5672794-5672307 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 272, 68

Conread position: 4-515
Cow position: chr22:45880052-45880567 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 52

Conread position: 5-371
Cow position: chr22:15956643-15957003 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 245
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 139, 19

Conread position: 5-506
Cow position: chr22:37131702-37131199 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 262, 65

Conread position: 11-452
Cow position: chr22:157853-158312 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 266, 59

Conread position: 20-515
Cow position: chr22:6985296-6984792 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 50

Conread position: 22-516
Cow position: chr22:1284894-1285392 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 12

Conread position: 34-506
Cow position: chr22:36267395-36266933 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 316
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 109, 42

Conread position: 39-486
Cow position: chr22:301967-302415 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 285
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 326, 85

Conread position: 43-503
Cow position: chr22:41474310-41474778 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 289
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 43, 191

Conread position: 63-515
Cow position: chr22:44369620-44370076 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 299, 96

Conread position: 80-516
Cow position: chr22:1270528-1270964 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 266, 78

Conread position: 86-426
Cow position: chr22:4065620-4065269 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 90-515
Cow position: chr22:37073218-37073607 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 300
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 54, 60

Conread position: 94-468
Cow position: chr22:10076787-10077160 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 59

Conread position: 100-513
Cow position: chr22:9658284-9657863 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 273
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 67, 351

Conread position: 100-515
Cow position: chr22:309676-309262 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 15

Conread position: 104-499
Cow position: chr22:117857-118261 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 54

Conread position: 132-515
Cow position: chr22:18475836-18476223 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 29

Conread position: 156-514
Cow position: chr22:44395689-44395321 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 146

Conread position: 177-487
Cow position: chr22:37067027-37067341 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 96

Conread position: 178-513
Cow position: chr22:1047263-1046926 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 223
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 96, 79

Conread position: 179-502
Cow position: chr22:13772666-13772350 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 21

Conread position: 179-515
Cow position: chr22:44457201-44456849 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 58

Conread position: 179-515
Cow position: chr22:46585426-46585774 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 0

Conread position: 227-506
Cow position: chr22:36534126-36534414 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 273

Conread position: 262-506
Cow position: chr22:42771348-42771098 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 181
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 13, 235

Conread position: 273-506
Cow position: chr22:526121-526358 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 181
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 100, 79

Conread position: 298-515
Cow position: chr22:12732308-12732519 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 168
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 175, 20

Conread position: 327-513
Cow position: chr22:36180879-36180685 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 138
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 45, 0

Conread position: 348-495
Cow position: chr22:40380906-40380760 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 111
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 122, 135

Conread position: 378-515
Cow position: chr22:27386710-27386849 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 104
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 110, 0

Show alignments to all cow chromosomes.