Cow genome map
| Conread name: | Ss1.1-rpigca0_007986.5 |
| Conread position: | 1-193 |
| Cow position: | chr23:29474497-29474682 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 1-237 |
| Cow position: | chr23:25684001-25684231 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 169, 61 |
| Conread position: | 1-243 |
| Cow position: | chr23:6216631-6216396 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 123, 31 |
| Conread position: | 1-290 |
| Cow position: | chr23:20156157-20156459 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 219 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 104, 71 |
| Conread position: | 1-346 |
| Cow position: | chr23:2757654-2757296 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 251 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 166, 62 |
| Conread position: | 1-367 |
| Cow position: | chr23:15177135-15176771 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 69 |
| Conread position: | 1-386 |
| Cow position: | chr23:4888735-4888357 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 267, 69 |
| Conread position: | 1-478 |
| Cow position: | chr23:19332347-19332821 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 322 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 190, 75 |
| Conread position: | 1-503 |
| Cow position: | chr23:967285-967796 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 69 |
| Conread position: | 1-505 |
| Cow position: | chr23:2340456-2339957 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 265, 69 |
| Conread position: | 1-506 |
| Cow position: | chr23:7273696-7273208 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 60 |
| Conread position: | 1-506 |
| Cow position: | chr23:34175240-34174738 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 20 |
| Conread position: | 1-507 |
| Cow position: | chr23:4640564-4641075 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 69 |
| Conread position: | 1-513 |
| Cow position: | chr23:16616789-16617293 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 69 |
| Conread position: | 1-513 |
| Cow position: | chr23:19489602-19489081 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 69 |
| Conread position: | 1-513 |
| Cow position: | chr23:36031313-36031830 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 360, 69 |
| Conread position: | 1-515 |
| Cow position: | chr23:2027059-2027585 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 364, 69 |
| Conread position: | 1-515 |
| Cow position: | chr23:4434519-4434013 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 266, 20 |
| Conread position: | 1-515 |
| Cow position: | chr23:15525670-15525157 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 364, 69 |
| Conread position: | 1-515 |
| Cow position: | chr23:27399564-27399044 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 69 |
| Conread position: | 1-516 |
| Cow position: | chr23:4816135-4815615 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 71 |
| Conread position: | 2-459 |
| Cow position: | chr23:30636242-30636706 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 68 |
| Conread position: | 2-515 |
| Cow position: | chr23:1025001-1025506 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 39 |
| Conread position: | 2-515 |
| Cow position: | chr23:2795506-2796024 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 74 |
| Conread position: | 2-515 |
| Cow position: | chr23:15219833-15220355 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 68 |
| Conread position: | 3-245 |
| Cow position: | chr23:31591745-31591988 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 61, 131 |
| Conread position: | 3-282 |
| Cow position: | chr23:14974503-14974779 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 199 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 219, 67 |
| Conread position: | 3-308 |
| Cow position: | chr23:2524139-2524442 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 67 |
| Conread position: | 3-371 |
| Cow position: | chr23:2313180-2313547 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 265, 48 |
| Conread position: | 3-438 |
| Cow position: | chr23:31446873-31446431 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 67 |
| Conread position: | 3-472 |
| Cow position: | chr23:25847349-25846887 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 294 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 115, 56 |
| Conread position: | 3-487 |
| Cow position: | chr23:3013704-3013199 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 75 |
| Conread position: | 3-487 |
| Cow position: | chr23:5779029-5779518 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 70 |
| Conread position: | 3-487 |
| Cow position: | chr23:5874716-5875204 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 69 |
| Conread position: | 3-506 |
| Cow position: | chr23:28217348-28216841 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 67 |
| Conread position: | 3-515 |
| Cow position: | chr23:4277012-4276496 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 367, 45 |
| Conread position: | 3-515 |
| Cow position: | chr23:4359888-4359375 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 67 |
| Conread position: | 3-515 |
| Cow position: | chr23:19950525-19951047 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 58 |
| Conread position: | 3-515 |
| Cow position: | chr23:20302271-20301749 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 45 |
| Conread position: | 3-515 |
| Cow position: | chr23:22147192-22147721 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 67 |
| Conread position: | 4-486 |
| Cow position: | chr23:22945008-22945492 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 303 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 115, 44 |
| Conread position: | 5-281 |
| Cow position: | chr23:14965694-14965963 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 5-515 |
| Cow position: | chr23:11778528-11778024 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 65 |
| Conread position: | 7-499 |
| Cow position: | chr23:988587-989086 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 63 |
| Conread position: | 7-515 |
| Cow position: | chr23:3881651-3882157 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 364, 33 |
| Conread position: | 11-335 |
| Cow position: | chr23:4651270-4650943 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 99 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 267, 0 |
| Conread position: | 43-515 |
| Cow position: | chr23:28913429-28912951 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 27 |
| Conread position: | 45-500 |
| Cow position: | chr23:16481347-16481793 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 42 |
| Conread position: | 47-513 |
| Cow position: | chr23:4510113-4509646 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 325, 23 |
| Conread position: | 67-515 |
| Cow position: | chr23:22875639-22876090 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 20 |
| Conread position: | 77-349 |
| Cow position: | chr23:7750377-7750105 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 26, 89 |
| Conread position: | 77-486 |
| Cow position: | chr23:8302280-8302693 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 21, 52 |
| Conread position: | 81-486 |
| Cow position: | chr23:19017675-19017278 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 282 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 225, 13 |
| Conread position: | 95-422 |
| Cow position: | chr23:8980525-8980856 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 63 |
| Conread position: | 96-371 |
| Cow position: | chr23:4751980-4751704 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 53, 43 |
| Conread position: | 100-506 |
| Cow position: | chr23:31651911-31652290 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 279 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 49, 14 |
| Conread position: | 132-500 |
| Cow position: | chr23:2765451-2765814 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 26 |
| Conread position: | 156-467 |
| Cow position: | chr23:2574473-2574153 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 75 |
| Conread position: | 172-513 |
| Cow position: | chr23:31595284-31595642 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 184 |
| Conread position: | 179-363 |
| Cow position: | chr23:16615983-16616166 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 179-407 |
| Cow position: | chr23:2725742-2725510 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 83, 113 |
| Conread position: | 181-481 |
| Cow position: | chr23:1330406-1330712 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 92 |
| Conread position: | 196-515 |
| Cow position: | chr23:1141425-1141107 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 101 |
| Conread position: | 196-515 |
| Cow position: | chr23:2716220-2715889 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 207-506 |
| Cow position: | chr23:2768358-2768648 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 120, 39 |
| Conread position: | 273-513 |
| Cow position: | chr23:14966184-14966435 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 274-515 |
| Cow position: | chr23:14974981-14975224 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 177 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 214, 0 |
| Conread position: | 324-515 |
| Cow position: | chr23:2757239-2757036 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 345-500 |
| Cow position: | chr23:2524758-2524913 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 360-515 |
| Cow position: | chr23:15176746-15176595 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 128, 0 |
Show alignments to all cow chromosomes.