Cow genome map
| Conread name: | Ss1.1-rpigca0_007986.5 |
| Conread position: | 1-229 |
| Cow position: | chr24:37217151-37216925 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 174 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 89, 72 |
| Conread position: | 1-293 |
| Cow position: | chr24:9092131-9092419 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 69 |
| Conread position: | 1-299 |
| Cow position: | chr24:22952282-22951984 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 279, 69 |
| Conread position: | 1-465 |
| Cow position: | chr24:36559940-36560396 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 279, 60 |
| Conread position: | 1-489 |
| Cow position: | chr24:1447702-1447233 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 319 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 29, 84 |
| Conread position: | 1-506 |
| Cow position: | chr24:6145515-6144995 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 165 |
| Conread position: | 1-513 |
| Cow position: | chr24:12131340-12131857 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 69 |
| Conread position: | 1-514 |
| Cow position: | chr24:14390589-14391093 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 355, 75 |
| Conread position: | 1-515 |
| Cow position: | chr24:148473-148968 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 69 |
| Conread position: | 1-515 |
| Cow position: | chr24:4415383-4415902 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 69 |
| Conread position: | 1-515 |
| Cow position: | chr24:6335836-6335321 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 57 |
| Conread position: | 1-515 |
| Cow position: | chr24:12237200-12236687 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 69 |
| Conread position: | 1-515 |
| Cow position: | chr24:14384467-14384986 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 61 |
| Conread position: | 1-515 |
| Cow position: | chr24:15392178-15392674 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 459, 48 |
| Conread position: | 1-515 |
| Cow position: | chr24:19833531-19833007 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 73 |
| Conread position: | 1-515 |
| Cow position: | chr24:36707993-36707484 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 316, 123 |
| Conread position: | 1-515 |
| Cow position: | chr24:38635900-38635370 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 359 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 73, 53 |
| Conread position: | 1-516 |
| Cow position: | chr24:35841477-35841980 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 252, 75 |
| Conread position: | 2-505 |
| Cow position: | chr24:16649173-16649660 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 63 |
| Conread position: | 2-513 |
| Cow position: | chr24:12797623-12798121 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 2-513 |
| Cow position: | chr24:40654531-40654034 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 336 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 321, 68 |
| Conread position: | 2-515 |
| Cow position: | chr24:12162021-12161508 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 276, 20 |
| Conread position: | 2-515 |
| Cow position: | chr24:39678554-39678072 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 68 |
| Conread position: | 3-207 |
| Cow position: | chr24:6660465-6660665 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 146, 36 |
| Conread position: | 3-279 |
| Cow position: | chr24:40549018-40548747 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 201 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 203, 58 |
| Conread position: | 3-281 |
| Cow position: | chr24:12335630-12335923 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 120, 67 |
| Conread position: | 3-354 |
| Cow position: | chr24:16084516-16084867 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 265, 67 |
| Conread position: | 3-371 |
| Cow position: | chr24:2636262-2635896 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 11 |
| Conread position: | 3-371 |
| Cow position: | chr24:8030295-8029927 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 67 |
| Conread position: | 3-468 |
| Cow position: | chr24:12485173-12485645 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 255, 67 |
| Conread position: | 3-470 |
| Cow position: | chr24:7061244-7060777 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 67 |
| Conread position: | 3-478 |
| Cow position: | chr24:6084161-6083679 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 276, 67 |
| Conread position: | 3-479 |
| Cow position: | chr24:6024951-6025435 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 265, 67 |
| Conread position: | 3-479 |
| Cow position: | chr24:13188329-13187856 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 3-479 |
| Cow position: | chr24:33739193-33739681 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 50 |
| Conread position: | 3-486 |
| Cow position: | chr24:22793317-22792831 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 267, 69 |
| Conread position: | 3-487 |
| Cow position: | chr24:17187685-17187199 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 277, 73 |
| Conread position: | 3-490 |
| Cow position: | chr24:6537684-6537221 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 318 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 269, 56 |
| Conread position: | 3-515 |
| Cow position: | chr24:6434385-6433861 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 67 |
| Conread position: | 3-515 |
| Cow position: | chr24:6645557-6645041 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 366, 69 |
| Conread position: | 3-515 |
| Cow position: | chr24:9188587-9189107 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 265, 69 |
| Conread position: | 3-515 |
| Cow position: | chr24:12086342-12085827 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 67 |
| Conread position: | 3-515 |
| Cow position: | chr24:12224319-12224832 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 90 |
| Conread position: | 3-515 |
| Cow position: | chr24:33933510-33932991 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 67 |
| Conread position: | 3-515 |
| Cow position: | chr24:44017690-44017169 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 69 |
| Conread position: | 3-516 |
| Cow position: | chr24:35838472-35839002 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 163 |
| Conread position: | 5-370 |
| Cow position: | chr24:12568376-12568031 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 69, 10 |
| Conread position: | 5-506 |
| Cow position: | chr24:37321459-37321962 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 328 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 164, 65 |
| Conread position: | 6-456 |
| Cow position: | chr24:14873212-14873658 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 301 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 244, 56 |
| Conread position: | 6-487 |
| Cow position: | chr24:16141216-16140744 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 306 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 240, 31 |
| Conread position: | 6-514 |
| Cow position: | chr24:12113905-12114406 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 33 |
| Conread position: | 9-486 |
| Cow position: | chr24:23098296-23098777 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 305 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 65, 85 |
| Conread position: | 10-370 |
| Cow position: | chr24:5455414-5455777 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 50, 109 |
| Conread position: | 18-233 |
| Cow position: | chr24:35987228-35987427 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 24-463 |
| Cow position: | chr24:36297282-36296852 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 290 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 41, 90 |
| Conread position: | 34-515 |
| Cow position: | chr24:32331438-32330970 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 326 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 97, 42 |
| Conread position: | 42-516 |
| Cow position: | chr24:13531431-13531906 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 251, 28 |
| Conread position: | 48-515 |
| Cow position: | chr24:12288630-12289093 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 311, 28 |
| Conread position: | 52-333 |
| Cow position: | chr24:6511032-6511315 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 92, 234 |
| Conread position: | 58-314 |
| Cow position: | chr24:14585182-14584928 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 12 |
| Conread position: | 84-502 |
| Cow position: | chr24:13319292-13318877 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 274 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 186, 40 |
| Conread position: | 86-507 |
| Cow position: | chr24:13181289-13181700 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 279, 29 |
| Conread position: | 112-516 |
| Cow position: | chr24:13021704-13021294 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 257, 46 |
| Conread position: | 161-505 |
| Cow position: | chr24:6352185-6351829 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 337 |
| Conread position: | 179-506 |
| Cow position: | chr24:30117460-30117145 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 101, 118 |
| Conread position: | 183-515 |
| Cow position: | chr24:6057639-6057304 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 68, 19 |
| Conread position: | 196-513 |
| Cow position: | chr24:12208092-12207768 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 235 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 84, 7 |
| Conread position: | 200-515 |
| Cow position: | chr24:32125562-32125867 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 66 |
| Conread position: | 226-504 |
| Cow position: | chr24:35990737-35991017 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 29, 42 |
| Conread position: | 228-492 |
| Cow position: | chr24:37301159-37301426 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 45 |
| Conread position: | 232-515 |
| Cow position: | chr24:20268136-20267841 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 232-515 |
| Cow position: | chr24:37216651-37216354 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 277 |
| Conread position: | 242-515 |
| Cow position: | chr24:5993069-5993347 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 199 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 287-515 |
| Cow position: | chr24:29186666-29186429 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 183 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 307-500 |
| Cow position: | chr24:14583937-14583738 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 58, 27 |
| Conread position: | 313-513 |
| Cow position: | chr24:17314479-17314685 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 56, 188 |
Show alignments to all cow chromosomes.