Cow genome map
| Conread name: | Ss1.1-rpigca0_007986.5 |
| Conread position: | 1-218 |
| Cow position: | chr25:23345237-23345451 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 199, 69 |
| Conread position: | 1-255 |
| Cow position: | chr25:12942598-12942849 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 1-510 |
| Cow position: | chr25:18275731-18276230 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 69 |
| Conread position: | 1-514 |
| Cow position: | chr25:11933427-11933940 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 263, 19 |
| Conread position: | 1-515 |
| Cow position: | chr25:8675018-8674509 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 69 |
| Conread position: | 1-515 |
| Cow position: | chr25:13781132-13780618 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 261, 69 |
| Conread position: | 1-515 |
| Cow position: | chr25:18093121-18092603 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 279, 75 |
| Conread position: | 1-515 |
| Cow position: | chr25:22147597-22147076 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 277, 69 |
| Conread position: | 1-515 |
| Cow position: | chr25:25506752-25506230 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 279, 38 |
| Conread position: | 1-515 |
| Cow position: | chr25:26279359-26278857 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 38 |
| Conread position: | 2-205 |
| Cow position: | chr25:33665771-33665967 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 161, 47 |
| Conread position: | 2-485 |
| Cow position: | chr25:18231847-18231394 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 310 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 352, 75 |
| Conread position: | 2-515 |
| Cow position: | chr25:18889915-18890434 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 26 |
| Conread position: | 3-372 |
| Cow position: | chr25:36240656-36240278 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 163 |
| Conread position: | 3-453 |
| Cow position: | chr25:34656345-34656801 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 276, 69 |
| Conread position: | 3-486 |
| Cow position: | chr25:20776797-20777287 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 68 |
| Conread position: | 3-486 |
| Cow position: | chr25:32580066-32579594 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 73 |
| Conread position: | 3-487 |
| Cow position: | chr25:17468598-17469083 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 358, 48 |
| Conread position: | 3-500 |
| Cow position: | chr25:14016265-14015773 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 367, 36 |
| Conread position: | 3-500 |
| Cow position: | chr25:18027525-18028032 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 67 |
| Conread position: | 3-513 |
| Cow position: | chr25:33990959-33991468 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 36 |
| Conread position: | 3-515 |
| Cow position: | chr25:17589448-17589963 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 35 |
| Conread position: | 3-515 |
| Cow position: | chr25:35362329-35362839 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 359, 26 |
| Conread position: | 4-515 |
| Cow position: | chr25:17560506-17561012 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 77 |
| Conread position: | 5-470 |
| Cow position: | chr25:18421766-18421277 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 322 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 46, 73 |
| Conread position: | 5-479 |
| Cow position: | chr25:20629676-20629195 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 277, 65 |
| Conread position: | 5-515 |
| Cow position: | chr25:18255268-18255774 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 86 |
| Conread position: | 5-515 |
| Cow position: | chr25:20494456-20493946 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 334 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 39, 154 |
| Conread position: | 7-458 |
| Cow position: | chr25:12759503-12759959 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 69 |
| Conread position: | 7-486 |
| Cow position: | chr25:19917180-19916700 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 63 |
| Conread position: | 7-506 |
| Cow position: | chr25:11375252-11375753 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 47 |
| Conread position: | 15-470 |
| Cow position: | chr25:19288267-19288717 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 304 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 36, 71 |
| Conread position: | 18-297 |
| Cow position: | chr25:18173449-18173167 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 206 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 28, 55 |
| Conread position: | 35-487 |
| Cow position: | chr25:18060521-18060983 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 245, 36 |
| Conread position: | 44-515 |
| Cow position: | chr25:26867272-26866803 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 26 |
| Conread position: | 53-515 |
| Cow position: | chr25:34346940-34347411 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 105 |
| Conread position: | 78-515 |
| Cow position: | chr25:18302817-18302354 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 74 |
| Conread position: | 99-508 |
| Cow position: | chr25:18411283-18411694 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 59 |
| Conread position: | 157-515 |
| Cow position: | chr25:17562971-17563321 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 75 |
| Conread position: | 179-515 |
| Cow position: | chr25:33243786-33243459 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 98, 179 |
| Conread position: | 180-504 |
| Cow position: | chr25:21901993-21901674 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 182, 35 |
| Conread position: | 181-470 |
| Cow position: | chr25:24171953-24171662 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 198 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 250-456 |
| Cow position: | chr25:12943583-12943796 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 298-515 |
| Cow position: | chr25:34014540-34014765 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 74, 105 |
Show alignments to all cow chromosomes.