Cow genome map
| Conread name: | Ss1.1-rpigca0_007986.5 |
| Conread position: | 1-334 |
| Cow position: | chr26:30589254-30589578 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 1-515 |
| Cow position: | chr26:9563234-9563757 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 69 |
| Conread position: | 1-515 |
| Cow position: | chr26:17396808-17397335 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 251, 69 |
| Conread position: | 1-515 |
| Cow position: | chr26:19351391-19351912 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 69 |
| Conread position: | 2-372 |
| Cow position: | chr26:11301909-11301552 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 249 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 132, 20 |
| Conread position: | 2-515 |
| Cow position: | chr26:5675281-5674771 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 68 |
| Conread position: | 3-422 |
| Cow position: | chr26:2198747-2198329 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 50 |
| Conread position: | 3-468 |
| Cow position: | chr26:15144639-15145107 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 36 |
| Conread position: | 3-479 |
| Cow position: | chr26:18855210-18854734 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 279, 67 |
| Conread position: | 3-486 |
| Cow position: | chr26:3030708-3031177 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 366, 67 |
| Conread position: | 3-487 |
| Cow position: | chr26:12574286-12574765 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 346, 19 |
| Conread position: | 3-515 |
| Cow position: | chr26:2352237-2352747 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 67 |
| Conread position: | 3-515 |
| Cow position: | chr26:8869998-8869480 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 67 |
| Conread position: | 3-515 |
| Cow position: | chr26:11253935-11254460 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 67 |
| Conread position: | 3-515 |
| Cow position: | chr26:12588443-12588956 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 255, 67 |
| Conread position: | 4-486 |
| Cow position: | chr26:30782863-30782401 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 357, 66 |
| Conread position: | 5-486 |
| Cow position: | chr26:8282942-8283409 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 315 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 139, 71 |
| Conread position: | 5-487 |
| Cow position: | chr26:3691919-3691434 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 55 |
| Conread position: | 5-500 |
| Cow position: | chr26:4605064-4605563 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 65 |
| Conread position: | 7-370 |
| Cow position: | chr26:11536719-11537078 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 305, 19 |
| Conread position: | 29-477 |
| Cow position: | chr26:15553182-15553609 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 291 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 260, 22 |
| Conread position: | 35-246 |
| Cow position: | chr26:21350465-21350258 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 98, 35 |
| Conread position: | 42-471 |
| Cow position: | chr26:16904864-16904434 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 28 |
| Conread position: | 46-281 |
| Cow position: | chr26:12656372-12656142 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 105, 8 |
| Conread position: | 53-486 |
| Cow position: | chr26:3074594-3074166 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 281 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 90, 46 |
| Conread position: | 55-271 |
| Cow position: | chr26:9845542-9845755 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 65-506 |
| Cow position: | chr26:19536246-19535791 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 290 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 35, 88 |
| Conread position: | 72-407 |
| Cow position: | chr26:12666022-12665697 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 239 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 202, 12 |
| Conread position: | 72-480 |
| Cow position: | chr26:6850121-6850536 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 85 |
| Conread position: | 80-515 |
| Cow position: | chr26:20255116-20254683 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 9 |
| Conread position: | 103-487 |
| Cow position: | chr26:23604878-23605278 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 23 |
| Conread position: | 135-515 |
| Cow position: | chr26:9112457-9112067 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 23 |
| Conread position: | 158-515 |
| Cow position: | chr26:9850652-9851036 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 275 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 6, 168 |
| Conread position: | 158-515 |
| Cow position: | chr26:9854118-9854500 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 274 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 6, 168 |
| Conread position: | 164-304 |
| Cow position: | chr26:6602170-6602027 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 188-515 |
| Cow position: | chr26:6516795-6516466 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 118, 47 |
| Conread position: | 242-515 |
| Cow position: | chr26:24201505-24201223 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 262-515 |
| Cow position: | chr26:19998349-19998088 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 110, 11 |
| Conread position: | 273-512 |
| Cow position: | chr26:12655798-12655561 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 185 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 186, 23 |
| Conread position: | 273-515 |
| Cow position: | chr26:9846282-9846533 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 235 |
| Conread position: | 310-492 |
| Cow position: | chr26:19142536-19142350 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 20, 11 |
| Conread position: | 311-514 |
| Cow position: | chr26:34012834-34012625 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 50, 183 |
| Conread position: | 324-515 |
| Cow position: | chr26:30590439-30590639 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 38, 0 |
Show alignments to all cow chromosomes.