Cow genome map


           Conread name:
           Ss1.1-rpigca0_007986.5
        

               Conread position:
               1-122
               

               Cow position:
               
               

               Alignm length:
               122
               

               Alignm identity:
               94
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               1-281
               

               Cow position:
               
               

               Alignm length:
               281
               

               Alignm identity:
               203
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               1-334
               

               Cow position:
               
               

               Alignm length:
               337
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               276, 69
               

               Conread position:
               1-334
               

               Cow position:
               
               

               Alignm length:
               337
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               267, 69
               

               Conread position:
               1-369
               

               Cow position:
               
               

               Alignm length:
               371
               

               Alignm identity:
               231
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               137, 149
               

               Conread position:
               1-371
               

               Cow position:
               
               

               Alignm length:
               374
               

               Alignm identity:
               246
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               141, 20
               

               Conread position:
               1-423
               

               Cow position:
               
               

               Alignm length:
               436
               

               Alignm identity:
               277
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               205, 48
               

               Conread position:
               1-455
               

               Cow position:
               
               

               Alignm length:
               465
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               267, 69
               

               Conread position:
               1-505
               

               Cow position:
               
               

               Alignm length:
               526
               

               Alignm identity:
               330
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               120, 92
               

               Conread position:
               1-507
               

               Cow position:
               
               

               Alignm length:
               514
               

               Alignm identity:
               395
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               364, 76
               

               Conread position:
               1-513
               

               Cow position:
               
               

               Alignm length:
               521
               

               Alignm identity:
               360
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               213, 56
               

               Conread position:
               1-513
               

               Cow position:
               
               

               Alignm length:
               532
               

               Alignm identity:
               396
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 69
               

               Conread position:
               1-513
               

               Cow position:
               
               

               Alignm length:
               523
               

               Alignm identity:
               398
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               370, 53
               

               Conread position:
               1-513
               

               Cow position:
               
               

               Alignm length:
               525
               

               Alignm identity:
               389
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               270, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               527
               

               Alignm identity:
               387
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               274, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               520
               

               Alignm identity:
               376
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               267, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               529
               

               Alignm identity:
               387
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               523
               

               Alignm identity:
               382
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 70
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               524
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               265, 23
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               526
               

               Alignm identity:
               371
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               283, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               527
               

               Alignm identity:
               389
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               278, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               528
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               114, 58
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               527
               

               Alignm identity:
               386
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               267, 68
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               518
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 70
               

               Conread position:
               1-516
               

               Cow position:
               
               

               Alignm length:
               529
               

               Alignm identity:
               404
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 69
               

               Conread position:
               2-515
               

               Cow position:
               
               

               Alignm length:
               527
               

               Alignm identity:
               383
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               269, 68
               

               Conread position:
               2-515
               

               Cow position:
               
               

               Alignm length:
               523
               

               Alignm identity:
               390
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               269, 68
               

               Conread position:
               3-156
               

               Cow position:
               
               

               Alignm length:
               154
               

               Alignm identity:
               116
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               3-211
               

               Cow position:
               
               

               Alignm length:
               209
               

               Alignm identity:
               150
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               3-238
               

               Cow position:
               
               

               Alignm length:
               236
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               3-245
               

               Cow position:
               
               

               Alignm length:
               252
               

               Alignm identity:
               174
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               78, 67
               

               Conread position:
               3-264
               

               Cow position:
               
               

               Alignm length:
               262
               

               Alignm identity:
               184
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               3-271
               

               Cow position:
               
               

               Alignm length:
               277
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               36, 80
               

               Conread position:
               3-437
               

               Cow position:
               
               

               Alignm length:
               443
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 67
               

               Conread position:
               3-449
               

               Cow position:
               
               

               Alignm length:
               453
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               268, 67
               

               Conread position:
               3-479
               

               Cow position:
               
               

               Alignm length:
               487
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               270, 67
               

               Conread position:
               3-486
               

               Cow position:
               
               

               Alignm length:
               494
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               211, 67
               

               Conread position:
               3-486
               

               Cow position:
               
               

               Alignm length:
               497
               

               Alignm identity:
               372
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               204, 55
               

               Conread position:
               3-507
               

               Cow position:
               
               

               Alignm length:
               522
               

               Alignm identity:
               369
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 42
               

               Conread position:
               3-513
               

               Cow position:
               
               

               Alignm length:
               520
               

               Alignm identity:
               375
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               362, 67
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               523
               

               Alignm identity:
               379
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               356, 73
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               520
               

               Alignm identity:
               377
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               368, 67
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               525
               

               Alignm identity:
               371
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               270, 67
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               518
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               270, 69
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               526
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               272, 67
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               525
               

               Alignm identity:
               379
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               268, 67
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               517
               

               Alignm identity:
               360
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               221, 67
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               524
               

               Alignm identity:
               373
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               268, 67
               

               Conread position:
               4-515
               

               Cow position:
               
               

               Alignm length:
               520
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 69
               

               Conread position:
               5-500
               

               Cow position:
               
               

               Alignm length:
               506
               

               Alignm identity:
               381
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 65
               

               Conread position:
               5-505
               

               Cow position:
               
               

               Alignm length:
               506
               

               Alignm identity:
               307
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               52, 76
               

               Conread position:
               6-373
               

               Cow position:
               
               

               Alignm length:
               373
               

               Alignm identity:
               233
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               189, 119
               

               Conread position:
               7-487
               

               Cow position:
               
               

               Alignm length:
               504
               

               Alignm identity:
               369
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 161
               

               Conread position:
               13-515
               

               Cow position:
               
               

               Alignm length:
               515
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 57
               

               Conread position:
               13-515
               

               Cow position:
               
               

               Alignm length:
               510
               

               Alignm identity:
               365
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               222, 81
               

               Conread position:
               23-335
               

               Cow position:
               
               

               Alignm length:
               316
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               255, 47
               

               Conread position:
               52-466
               

               Cow position:
               
               

               Alignm length:
               436
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 18
               

               Conread position:
               72-515
               

               Cow position:
               
               

               Alignm length:
               456
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 55
               

               Conread position:
               81-256
               

               Cow position:
               
               

               Alignm length:
               177
               

               Alignm identity:
               124
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               139, 77
               

               Conread position:
               88-510
               

               Cow position:
               
               

               Alignm length:
               427
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               181, 12
               

               Conread position:
               90-333
               

               Cow position:
               
               

               Alignm length:
               245
               

               Alignm identity:
               183
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               185, 68
               

               Conread position:
               114-515
               

               Cow position:
               
               

               Alignm length:
               414
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 44
               

               Conread position:
               114-515
               

               Cow position:
               
               

               Alignm length:
               414
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               159, 44
               

               Conread position:
               115-334
               

               Cow position:
               
               

               Alignm length:
               224
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               83, 43
               

               Conread position:
               142-515
               

               Cow position:
               
               

               Alignm length:
               376
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               211, 16
               

               Conread position:
               156-307
               

               Cow position:
               
               

               Alignm length:
               155
               

               Alignm identity:
               111
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               122, 0
               

               Conread position:
               163-486
               

               Cow position:
               
               

               Alignm length:
               337
               

               Alignm identity:
               218
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               186, 59
               

               Conread position:
               178-398
               

               Cow position:
               
               

               Alignm length:
               223
               

               Alignm identity:
               178
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               97, 44
               

               Conread position:
               179-350
               

               Cow position:
               
               

               Alignm length:
               173
               

               Alignm identity:
               133
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               163, 61
               

               Conread position:
               179-507
               

               Cow position:
               
               

               Alignm length:
               333
               

               Alignm identity:
               214
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               12, 18
               

               Conread position:
               183-506
               

               Cow position:
               
               

               Alignm length:
               337
               

               Alignm identity:
               228
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               87, 111
               

               Conread position:
               183-515
               

               Cow position:
               
               

               Alignm length:
               343
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               97, 319
               

               Conread position:
               202-486
               

               Cow position:
               
               

               Alignm length:
               290
               

               Alignm identity:
               187
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               72, 11
               

               Conread position:
               203-424
               

               Cow position:
               
               

               Alignm length:
               227
               

               Alignm identity:
               159
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               169, 52
               

               Conread position:
               235-515
               

               Cow position:
               
               

               Alignm length:
               291
               

               Alignm identity:
               207
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               132, 38
               

               Conread position:
               259-515
               

               Cow position:
               
               

               Alignm length:
               266
               

               Alignm identity:
               190
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               112, 176
               

               Conread position:
               289-515
               

               Cow position:
               
               

               Alignm length:
               235
               

               Alignm identity:
               177
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               15, 8
               

               Conread position:
               311-515
               

               Cow position:
               
               

               Alignm length:
               214
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               324-515
               

               Cow position:
               
               

               Alignm length:
               194
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               71, 121
               

               Conread position:
               324-515
               

               Cow position:
               
               

               Alignm length:
               202
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               324-515
               

               Cow position:
               
               

               Alignm length:
               202
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               329-515
               

               Cow position:
               
               

               Alignm length:
               196
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               330-514
               

               Cow position:
               
               

               Alignm length:
               194
               

               Alignm identity:
               141
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               336-513
               

               Cow position:
               
               

               Alignm length:
               187
               

               Alignm identity:
               134
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               385-515
               

               Cow position:
               
               

               Alignm length:
               133
               

               Alignm identity:
               101
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               28, 15
               
Show alignments to all cow chromosomes.