Cow genome map
| Conread name: | Ss1.1-rpigca0_007986.5 |
| Conread position: | 1-122 |
| Cow position: | chr28:5751602-5751722 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 1-281 |
| Cow position: | chr28:5114707-5114972 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 203 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-334 |
| Cow position: | chr28:1504956-1504627 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 276, 69 |
| Conread position: | 1-334 |
| Cow position: | chr28:15377887-15378220 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 267, 69 |
| Conread position: | 1-369 |
| Cow position: | chr28:17934931-17935288 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 231 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 137, 149 |
| Conread position: | 1-371 |
| Cow position: | chr28:34324917-34324562 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 246 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 141, 20 |
| Conread position: | 1-423 |
| Cow position: | chr28:10591281-10591696 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 277 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 205, 48 |
| Conread position: | 1-455 |
| Cow position: | chr28:1814763-1815223 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 267, 69 |
| Conread position: | 1-505 |
| Cow position: | chr28:34649048-34648538 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 330 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 120, 92 |
| Conread position: | 1-507 |
| Cow position: | chr28:1387290-1387796 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 364, 76 |
| Conread position: | 1-513 |
| Cow position: | chr28:7817308-7816829 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 56 |
| Conread position: | 1-513 |
| Cow position: | chr28:9155175-9155687 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 69 |
| Conread position: | 1-513 |
| Cow position: | chr28:21359106-21358604 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 370, 53 |
| Conread position: | 1-513 |
| Cow position: | chr28:32792275-32792795 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 69 |
| Conread position: | 1-515 |
| Cow position: | chr28:2083700-2083186 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 69 |
| Conread position: | 1-515 |
| Cow position: | chr28:3192687-3193193 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 267, 69 |
| Conread position: | 1-515 |
| Cow position: | chr28:5565967-5565443 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 69 |
| Conread position: | 1-515 |
| Cow position: | chr28:7002094-7001584 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 70 |
| Conread position: | 1-515 |
| Cow position: | chr28:10581882-10582399 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 265, 23 |
| Conread position: | 1-515 |
| Cow position: | chr28:14705567-14706089 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 69 |
| Conread position: | 1-515 |
| Cow position: | chr28:17667409-17667930 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 69 |
| Conread position: | 1-515 |
| Cow position: | chr28:18520359-18520879 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 58 |
| Conread position: | 1-515 |
| Cow position: | chr28:22261046-22261569 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 267, 68 |
| Conread position: | 1-515 |
| Cow position: | chr28:33252418-33251926 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 70 |
| Conread position: | 1-516 |
| Cow position: | chr28:8721343-8721864 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 69 |
| Conread position: | 2-515 |
| Cow position: | chr28:782498-781979 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 68 |
| Conread position: | 2-515 |
| Cow position: | chr28:13460073-13459556 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 68 |
| Conread position: | 3-156 |
| Cow position: | chr28:4380742-4380888 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 3-211 |
| Cow position: | chr28:2724788-2724993 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 3-238 |
| Cow position: | chr28:9136948-9137178 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 3-245 |
| Cow position: | chr28:7790184-7790434 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 78, 67 |
| Conread position: | 3-264 |
| Cow position: | chr28:7740588-7740340 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 3-271 |
| Cow position: | chr28:6657203-6657470 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 36, 80 |
| Conread position: | 3-437 |
| Cow position: | chr28:24587537-24587098 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 67 |
| Conread position: | 3-449 |
| Cow position: | chr28:7822360-7821915 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 67 |
| Conread position: | 3-479 |
| Cow position: | chr28:14750650-14750168 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 67 |
| Conread position: | 3-486 |
| Cow position: | chr28:6780231-6780714 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 67 |
| Conread position: | 3-486 |
| Cow position: | chr28:9954235-9953748 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 55 |
| Conread position: | 3-507 |
| Cow position: | chr28:21325895-21325386 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 42 |
| Conread position: | 3-513 |
| Cow position: | chr28:2592017-2591508 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 362, 67 |
| Conread position: | 3-515 |
| Cow position: | chr28:8378667-8378148 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 73 |
| Conread position: | 3-515 |
| Cow position: | chr28:12150413-12149911 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 368, 67 |
| Conread position: | 3-515 |
| Cow position: | chr28:13440774-13441295 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 67 |
| Conread position: | 3-515 |
| Cow position: | chr28:15920363-15920877 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 69 |
| Conread position: | 3-515 |
| Cow position: | chr28:15951082-15950563 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 67 |
| Conread position: | 3-515 |
| Cow position: | chr28:17388584-17388063 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 67 |
| Conread position: | 3-515 |
| Cow position: | chr28:24667681-24667202 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 67 |
| Conread position: | 3-515 |
| Cow position: | chr28:26426175-26426679 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 67 |
| Conread position: | 4-515 |
| Cow position: | chr28:1953231-1952725 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 69 |
| Conread position: | 5-500 |
| Cow position: | chr28:7901455-7900958 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 65 |
| Conread position: | 5-505 |
| Cow position: | chr28:15585482-15584992 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 307 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 52, 76 |
| Conread position: | 6-373 |
| Cow position: | chr28:24306566-24306927 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 233 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 189, 119 |
| Conread position: | 7-487 |
| Cow position: | chr28:15682003-15681505 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 161 |
| Conread position: | 13-515 |
| Cow position: | chr28:5812798-5812299 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 57 |
| Conread position: | 13-515 |
| Cow position: | chr28:10619017-10619514 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 81 |
| Conread position: | 23-335 |
| Cow position: | chr28:24652363-24652062 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 255, 47 |
| Conread position: | 52-466 |
| Cow position: | chr28:17330473-17330899 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 18 |
| Conread position: | 72-515 |
| Cow position: | chr28:29819603-29819153 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 55 |
| Conread position: | 81-256 |
| Cow position: | chr28:15035471-15035643 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 139, 77 |
| Conread position: | 88-510 |
| Cow position: | chr28:22828068-22827651 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 12 |
| Conread position: | 90-333 |
| Cow position: | chr28:2989672-2989909 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 183 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 185, 68 |
| Conread position: | 114-515 |
| Cow position: | chr28:1168174-1168582 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 44 |
| Conread position: | 114-515 |
| Cow position: | chr28:34593832-34593425 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 44 |
| Conread position: | 115-334 |
| Cow position: | chr28:5751884-5752105 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 83, 43 |
| Conread position: | 142-515 |
| Cow position: | chr28:5796780-5796412 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 16 |
| Conread position: | 156-307 |
| Cow position: | chr28:12648786-12648940 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 163-486 |
| Cow position: | chr28:3773891-3774224 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 186, 59 |
| Conread position: | 178-398 |
| Cow position: | chr28:4380889-4381108 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 44 |
| Conread position: | 179-350 |
| Cow position: | chr28:2846569-2846738 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 163, 61 |
| Conread position: | 179-507 |
| Cow position: | chr28:18181429-18181756 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 12, 18 |
| Conread position: | 183-506 |
| Cow position: | chr28:18089078-18089411 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 228 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 87, 111 |
| Conread position: | 183-515 |
| Cow position: | chr28:13522653-13522315 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 319 |
| Conread position: | 202-486 |
| Cow position: | chr28:580715-580997 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 72, 11 |
| Conread position: | 203-424 |
| Cow position: | chr28:14491364-14491140 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 169, 52 |
| Conread position: | 235-515 |
| Cow position: | chr28:26007903-26007622 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 132, 38 |
| Conread position: | 259-515 |
| Cow position: | chr28:5115233-5115488 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 112, 176 |
| Conread position: | 289-515 |
| Cow position: | chr28:7790421-7790643 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 15, 8 |
| Conread position: | 311-515 |
| Cow position: | chr28:489285-489072 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 324-515 |
| Cow position: | chr28:2990184-2990372 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 71, 121 |
| Conread position: | 324-515 |
| Cow position: | chr28:5752378-5752579 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 324-515 |
| Cow position: | chr28:7740037-7739836 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 329-515 |
| Cow position: | chr28:15035639-15035834 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 330-514 |
| Cow position: | chr28:1504417-1504224 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 336-513 |
| Cow position: | chr28:15378244-15378430 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 385-515 |
| Cow position: | chr28:12410781-12410912 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 28, 15 |
Show alignments to all cow chromosomes.