Cow genome map


           Conread name:
           Ss1.1-rpigca0_007986.5
        

               Conread position:
               1-303
               

               Cow position:
               
               

               Alignm length:
               308
               

               Alignm identity:
               201
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               42, 80
               

               Conread position:
               1-371
               

               Cow position:
               
               

               Alignm length:
               374
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               269, 69
               

               Conread position:
               1-456
               

               Cow position:
               
               

               Alignm length:
               461
               

               Alignm identity:
               306
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               250, 14
               

               Conread position:
               1-487
               

               Cow position:
               
               

               Alignm length:
               491
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               370, 69
               

               Conread position:
               1-488
               

               Cow position:
               
               

               Alignm length:
               495
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               192, 68
               

               Conread position:
               1-500
               

               Cow position:
               
               

               Alignm length:
               518
               

               Alignm identity:
               381
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               222, 60
               

               Conread position:
               1-505
               

               Cow position:
               
               

               Alignm length:
               515
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               270, 69
               

               Conread position:
               1-513
               

               Cow position:
               
               

               Alignm length:
               526
               

               Alignm identity:
               384
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               140, 69
               

               Conread position:
               1-514
               

               Cow position:
               
               

               Alignm length:
               523
               

               Alignm identity:
               375
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               370, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               519
               

               Alignm identity:
               372
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               274, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               526
               

               Alignm identity:
               391
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               275, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               525
               

               Alignm identity:
               365
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 70
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               527
               

               Alignm identity:
               382
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               270, 58
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               527
               

               Alignm identity:
               371
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               280, 75
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               529
               

               Alignm identity:
               388
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               532
               

               Alignm identity:
               381
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               527
               

               Alignm identity:
               384
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               277, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               526
               

               Alignm identity:
               387
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               272, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               527
               

               Alignm identity:
               385
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               273, 68
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               527
               

               Alignm identity:
               388
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               278, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               522
               

               Alignm identity:
               382
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               359, 69
               

               Conread position:
               2-471
               

               Cow position:
               
               

               Alignm length:
               473
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               274, 68
               

               Conread position:
               2-498
               

               Cow position:
               
               

               Alignm length:
               506
               

               Alignm identity:
               361
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               208, 68
               

               Conread position:
               2-515
               

               Cow position:
               
               

               Alignm length:
               526
               

               Alignm identity:
               389
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               269, 68
               

               Conread position:
               3-143
               

               Cow position:
               
               

               Alignm length:
               141
               

               Alignm identity:
               104
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               3-161
               

               Cow position:
               
               

               Alignm length:
               164
               

               Alignm identity:
               120
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               133, 67
               

               Conread position:
               3-207
               

               Cow position:
               
               

               Alignm length:
               205
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               3-230
               

               Cow position:
               
               

               Alignm length:
               228
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               165, 0
               

               Conread position:
               3-242
               

               Cow position:
               
               

               Alignm length:
               240
               

               Alignm identity:
               174
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               3-256
               

               Cow position:
               
               

               Alignm length:
               254
               

               Alignm identity:
               181
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               3-278
               

               Cow position:
               
               

               Alignm length:
               277
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               239, 67
               

               Conread position:
               3-371
               

               Cow position:
               
               

               Alignm length:
               372
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               277, 36
               

               Conread position:
               3-392
               

               Cow position:
               
               

               Alignm length:
               393
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               272, 67
               

               Conread position:
               3-463
               

               Cow position:
               
               

               Alignm length:
               470
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               103, 67
               

               Conread position:
               3-478
               

               Cow position:
               
               

               Alignm length:
               491
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               195, 69
               

               Conread position:
               3-486
               

               Cow position:
               
               

               Alignm length:
               495
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               269, 74
               

               Conread position:
               3-486
               

               Cow position:
               
               

               Alignm length:
               492
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               368, 67
               

               Conread position:
               3-487
               

               Cow position:
               
               

               Alignm length:
               486
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               288, 67
               

               Conread position:
               3-500
               

               Cow position:
               
               

               Alignm length:
               505
               

               Alignm identity:
               372
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               280, 68
               

               Conread position:
               3-500
               

               Cow position:
               
               

               Alignm length:
               508
               

               Alignm identity:
               371
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 67
               

               Conread position:
               3-513
               

               Cow position:
               
               

               Alignm length:
               516
               

               Alignm identity:
               360
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 22
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               520
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               270, 69
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               526
               

               Alignm identity:
               366
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               280, 58
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               522
               

               Alignm identity:
               386
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               368, 67
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               528
               

               Alignm identity:
               390
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 77
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               524
               

               Alignm identity:
               371
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               270, 67
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               527
               

               Alignm identity:
               377
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               138, 67
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               524
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               268, 67
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               524
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               358, 67
               

               Conread position:
               4-513
               

               Cow position:
               
               

               Alignm length:
               525
               

               Alignm identity:
               376
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 61
               

               Conread position:
               5-465
               

               Cow position:
               
               

               Alignm length:
               462
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 65
               

               Conread position:
               5-486
               

               Cow position:
               
               

               Alignm length:
               494
               

               Alignm identity:
               308
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               63, 111
               

               Conread position:
               5-487
               

               Cow position:
               
               

               Alignm length:
               494
               

               Alignm identity:
               366
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               269, 67
               

               Conread position:
               5-515
               

               Cow position:
               
               

               Alignm length:
               521
               

               Alignm identity:
               389
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 65
               

               Conread position:
               5-515
               

               Cow position:
               
               

               Alignm length:
               513
               

               Alignm identity:
               366
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               483, 65
               

               Conread position:
               5-515
               

               Cow position:
               
               

               Alignm length:
               523
               

               Alignm identity:
               380
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               273, 65
               

               Conread position:
               6-486
               

               Cow position:
               
               

               Alignm length:
               495
               

               Alignm identity:
               308
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               117, 48
               

               Conread position:
               7-500
               

               Cow position:
               
               

               Alignm length:
               509
               

               Alignm identity:
               368
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               269, 80
               

               Conread position:
               7-507
               

               Cow position:
               
               

               Alignm length:
               517
               

               Alignm identity:
               338
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               52, 19
               

               Conread position:
               7-507
               

               Cow position:
               
               

               Alignm length:
               519
               

               Alignm identity:
               339
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               52, 19
               

               Conread position:
               7-515
               

               Cow position:
               
               

               Alignm length:
               518
               

               Alignm identity:
               329
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               260, 54
               

               Conread position:
               9-515
               

               Cow position:
               
               

               Alignm length:
               527
               

               Alignm identity:
               372
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               237, 61
               

               Conread position:
               17-407
               

               Cow position:
               
               

               Alignm length:
               396
               

               Alignm identity:
               253
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               125, 31
               

               Conread position:
               18-370
               

               Cow position:
               
               

               Alignm length:
               358
               

               Alignm identity:
               230
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               105, 27
               

               Conread position:
               47-370
               

               Cow position:
               
               

               Alignm length:
               327
               

               Alignm identity:
               224
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               54, 78
               

               Conread position:
               53-222
               

               Cow position:
               
               

               Alignm length:
               170
               

               Alignm identity:
               122
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               72-513
               

               Cow position:
               
               

               Alignm length:
               459
               

               Alignm identity:
               301
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               140, 80
               

               Conread position:
               78-332
               

               Cow position:
               
               

               Alignm length:
               264
               

               Alignm identity:
               196
               

               Alignm E-value:
               7.9874e-44
               

               Alignm gaps (pig, cow):
               11, 84
               

               Conread position:
               94-509
               

               Cow position:
               
               

               Alignm length:
               429
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               176, 64
               

               Conread position:
               97-498
               

               Cow position:
               
               

               Alignm length:
               411
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               172, 27
               

               Conread position:
               135-515
               

               Cow position:
               
               

               Alignm length:
               387
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 23
               

               Conread position:
               154-470
               

               Cow position:
               
               

               Alignm length:
               323
               

               Alignm identity:
               181
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               222, 68
               

               Conread position:
               163-513
               

               Cow position:
               
               

               Alignm length:
               351
               

               Alignm identity:
               222
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               210, 0
               

               Conread position:
               181-515
               

               Cow position:
               
               

               Alignm length:
               352
               

               Alignm identity:
               233
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               77, 110
               

               Conread position:
               189-513
               

               Cow position:
               
               

               Alignm length:
               334
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               181, 0
               

               Conread position:
               203-339
               

               Cow position:
               
               

               Alignm length:
               137
               

               Alignm identity:
               110
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               203-369
               

               Cow position:
               
               

               Alignm length:
               170
               

               Alignm identity:
               131
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               137, 158
               

               Conread position:
               203-471
               

               Cow position:
               
               

               Alignm length:
               289
               

               Alignm identity:
               204
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               70, 284
               

               Conread position:
               208-515
               

               Cow position:
               
               

               Alignm length:
               324
               

               Alignm identity:
               208
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               129, 67
               

               Conread position:
               242-515
               

               Cow position:
               
               

               Alignm length:
               286
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 7
               

               Conread position:
               263-515
               

               Cow position:
               
               

               Alignm length:
               264
               

               Alignm identity:
               182
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               268-515
               

               Cow position:
               
               

               Alignm length:
               248
               

               Alignm identity:
               174
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               334-515
               

               Cow position:
               
               

               Alignm length:
               187
               

               Alignm identity:
               135
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               358-516
               

               Cow position:
               
               

               Alignm length:
               159
               

               Alignm identity:
               121
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               128, 0
               

               Conread position:
               378-513
               

               Cow position:
               
               

               Alignm length:
               136
               

               Alignm identity:
               103
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               115, 0
               

               Conread position:
               378-513
               

               Cow position:
               
               

               Alignm length:
               136
               

               Alignm identity:
               102
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               115, 0
               
Show alignments to all cow chromosomes.