Cow genome map
| Conread name: | Ss1.1-rpigca0_007986.5 |
| Conread position: | 1-303 |
| Cow position: | chr29:11855666-11855368 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 201 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 42, 80 |
| Conread position: | 1-371 |
| Cow position: | chr29:13852953-13853319 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 69 |
| Conread position: | 1-456 |
| Cow position: | chr29:24198552-24198987 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 306 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 250, 14 |
| Conread position: | 1-487 |
| Cow position: | chr29:34799739-34800224 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 370, 69 |
| Conread position: | 1-488 |
| Cow position: | chr29:15950121-15950599 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 68 |
| Conread position: | 1-500 |
| Cow position: | chr29:21543298-21543808 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 60 |
| Conread position: | 1-505 |
| Cow position: | chr29:26164752-26165261 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 69 |
| Conread position: | 1-513 |
| Cow position: | chr29:48408-48926 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 69 |
| Conread position: | 1-514 |
| Cow position: | chr29:10648181-10648696 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 370, 69 |
| Conread position: | 1-515 |
| Cow position: | chr29:104637-104133 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 69 |
| Conread position: | 1-515 |
| Cow position: | chr29:2099915-2099394 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 69 |
| Conread position: | 1-515 |
| Cow position: | chr29:5957674-5957155 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 70 |
| Conread position: | 1-515 |
| Cow position: | chr29:6266431-6266944 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 58 |
| Conread position: | 1-515 |
| Cow position: | chr29:20251230-20250707 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 75 |
| Conread position: | 1-515 |
| Cow position: | chr29:21246640-21246116 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 69 |
| Conread position: | 1-515 |
| Cow position: | chr29:23975910-23975381 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 69 |
| Conread position: | 1-515 |
| Cow position: | chr29:25932474-25932996 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 277, 69 |
| Conread position: | 1-515 |
| Cow position: | chr29:32539881-32539359 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 69 |
| Conread position: | 1-515 |
| Cow position: | chr29:39079642-39080158 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 68 |
| Conread position: | 1-515 |
| Cow position: | chr29:43322630-43322107 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 69 |
| Conread position: | 1-515 |
| Cow position: | chr29:45459785-45459272 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 359, 69 |
| Conread position: | 2-471 |
| Cow position: | chr29:16022599-16022138 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 68 |
| Conread position: | 2-498 |
| Cow position: | chr29:2689971-2689471 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 68 |
| Conread position: | 2-515 |
| Cow position: | chr29:7431146-7431668 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 68 |
| Conread position: | 3-143 |
| Cow position: | chr29:13582140-13582001 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 104 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 3-161 |
| Cow position: | chr29:9643690-9643852 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 133, 67 |
| Conread position: | 3-207 |
| Cow position: | chr29:669988-670189 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 3-230 |
| Cow position: | chr29:5983112-5983335 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 165, 0 |
| Conread position: | 3-242 |
| Cow position: | chr29:27980849-27981085 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 3-256 |
| Cow position: | chr29:19885138-19884888 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 3-278 |
| Cow position: | chr29:18856876-18857145 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 239, 67 |
| Conread position: | 3-371 |
| Cow position: | chr29:21426987-21427353 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 277, 36 |
| Conread position: | 3-392 |
| Cow position: | chr29:31181192-31180803 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 67 |
| Conread position: | 3-463 |
| Cow position: | chr29:7840865-7840400 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 67 |
| Conread position: | 3-478 |
| Cow position: | chr29:10848040-10848518 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 69 |
| Conread position: | 3-486 |
| Cow position: | chr29:610544-611034 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 74 |
| Conread position: | 3-486 |
| Cow position: | chr29:15894782-15895267 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 368, 67 |
| Conread position: | 3-487 |
| Cow position: | chr29:35196735-35196265 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 67 |
| Conread position: | 3-500 |
| Cow position: | chr29:16770191-16769700 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 68 |
| Conread position: | 3-500 |
| Cow position: | chr29:27040696-27041196 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 67 |
| Conread position: | 3-513 |
| Cow position: | chr29:2750344-2750830 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 22 |
| Conread position: | 3-515 |
| Cow position: | chr29:15969082-15969593 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 69 |
| Conread position: | 3-515 |
| Cow position: | chr29:16109795-16109276 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 58 |
| Conread position: | 3-515 |
| Cow position: | chr29:19623179-19623696 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 368, 67 |
| Conread position: | 3-515 |
| Cow position: | chr29:19653176-19652656 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 77 |
| Conread position: | 3-515 |
| Cow position: | chr29:27250266-27250785 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 67 |
| Conread position: | 3-515 |
| Cow position: | chr29:28060596-28061118 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 67 |
| Conread position: | 3-515 |
| Cow position: | chr29:32316109-32315590 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 67 |
| Conread position: | 3-515 |
| Cow position: | chr29:35296942-35296425 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 358, 67 |
| Conread position: | 4-513 |
| Cow position: | chr29:10823902-10824406 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 61 |
| Conread position: | 5-465 |
| Cow position: | chr29:1715310-1714860 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 65 |
| Conread position: | 5-486 |
| Cow position: | chr29:30109173-30108689 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 308 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 63, 111 |
| Conread position: | 5-487 |
| Cow position: | chr29:11049345-11048860 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 67 |
| Conread position: | 5-515 |
| Cow position: | chr29:2841301-2841817 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 65 |
| Conread position: | 5-515 |
| Cow position: | chr29:30811598-30811099 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 483, 65 |
| Conread position: | 5-515 |
| Cow position: | chr29:40502914-40503431 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 65 |
| Conread position: | 6-486 |
| Cow position: | chr29:32949210-32948728 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 308 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 117, 48 |
| Conread position: | 7-500 |
| Cow position: | chr29:43365935-43366431 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 80 |
| Conread position: | 7-507 |
| Cow position: | chr29:14013529-14013030 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 338 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 52, 19 |
| Conread position: | 7-507 |
| Cow position: | chr29:14072882-14073383 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 339 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 52, 19 |
| Conread position: | 7-515 |
| Cow position: | chr29:4634911-4635412 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 329 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 260, 54 |
| Conread position: | 9-515 |
| Cow position: | chr29:38227046-38226543 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 61 |
| Conread position: | 17-407 |
| Cow position: | chr29:2367855-2368228 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 253 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 125, 31 |
| Conread position: | 18-370 |
| Cow position: | chr29:39313538-39313888 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 230 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 105, 27 |
| Conread position: | 47-370 |
| Cow position: | chr29:34608925-34609242 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 54, 78 |
| Conread position: | 53-222 |
| Cow position: | chr29:43791198-43791033 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 72-513 |
| Cow position: | chr29:32640779-32640331 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 301 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 140, 80 |
| Conread position: | 78-332 |
| Cow position: | chr29:17662922-17662661 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 196 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 11, 84 |
| Conread position: | 94-509 |
| Cow position: | chr29:31121784-31121362 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 64 |
| Conread position: | 97-498 |
| Cow position: | chr29:12796498-12796896 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 27 |
| Conread position: | 135-515 |
| Cow position: | chr29:13578356-13577975 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 23 |
| Conread position: | 154-470 |
| Cow position: | chr29:10844202-10843887 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 222, 68 |
| Conread position: | 163-513 |
| Cow position: | chr29:9855009-9855353 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 210, 0 |
| Conread position: | 181-515 |
| Cow position: | chr29:803432-803781 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 77, 110 |
| Conread position: | 189-513 |
| Cow position: | chr29:9643838-9644171 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 0 |
| Conread position: | 203-339 |
| Cow position: | chr29:42802055-42801919 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 203-369 |
| Cow position: | chr29:42650195-42650027 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 137, 158 |
| Conread position: | 203-471 |
| Cow position: | chr29:2468058-2468345 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 70, 284 |
| Conread position: | 208-515 |
| Cow position: | chr29:32891078-32890756 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 129, 67 |
| Conread position: | 242-515 |
| Cow position: | chr29:45587466-45587750 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 7 |
| Conread position: | 263-515 |
| Cow position: | chr29:14368757-14368494 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 268-515 |
| Cow position: | chr29:34751890-34752132 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 334-515 |
| Cow position: | chr29:21431608-21431794 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 358-516 |
| Cow position: | chr29:8663984-8663828 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 378-513 |
| Cow position: | chr29:42650050-42649917 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 378-513 |
| Cow position: | chr29:42801910-42801777 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 115, 0 |
Show alignments to all cow chromosomes.