Cow genome map


           Conread name:
           Ss1.1-rpigca0_007986.5
        

               Conread position:
               1-220
               

               Cow position:
               
               

               Alignm length:
               220
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               1-281
               

               Cow position:
               
               

               Alignm length:
               281
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               1-281
               

               Cow position:
               
               

               Alignm length:
               281
               

               Alignm identity:
               194
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               1-292
               

               Cow position:
               
               

               Alignm length:
               298
               

               Alignm identity:
               197
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               61, 73
               

               Conread position:
               1-297
               

               Cow position:
               
               

               Alignm length:
               301
               

               Alignm identity:
               203
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               217, 10
               

               Conread position:
               1-305
               

               Cow position:
               
               

               Alignm length:
               309
               

               Alignm identity:
               222
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               206, 69
               

               Conread position:
               1-498
               

               Cow position:
               
               

               Alignm length:
               509
               

               Alignm identity:
               363
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               370, 69
               

               Conread position:
               1-498
               

               Cow position:
               
               

               Alignm length:
               506
               

               Alignm identity:
               355
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               284, 69
               

               Conread position:
               1-499
               

               Cow position:
               
               

               Alignm length:
               506
               

               Alignm identity:
               363
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               344, 102
               

               Conread position:
               1-502
               

               Cow position:
               
               

               Alignm length:
               512
               

               Alignm identity:
               371
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               270, 75
               

               Conread position:
               1-507
               

               Cow position:
               
               

               Alignm length:
               513
               

               Alignm identity:
               324
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               61, 124
               

               Conread position:
               1-507
               

               Cow position:
               
               

               Alignm length:
               513
               

               Alignm identity:
               316
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               154, 61
               

               Conread position:
               1-512
               

               Cow position:
               
               

               Alignm length:
               519
               

               Alignm identity:
               387
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               361, 75
               

               Conread position:
               1-514
               

               Cow position:
               
               

               Alignm length:
               526
               

               Alignm identity:
               370
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 77
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               523
               

               Alignm identity:
               390
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               370, 60
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               528
               

               Alignm identity:
               381
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               268, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               525
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               282, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               530
               

               Alignm identity:
               382
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               270, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               527
               

               Alignm identity:
               390
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               277, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               528
               

               Alignm identity:
               385
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               267, 75
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               519
               

               Alignm identity:
               365
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               286, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               527
               

               Alignm identity:
               383
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               270, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               527
               

               Alignm identity:
               393
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               267, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               536
               

               Alignm identity:
               348
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               141, 61
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               528
               

               Alignm identity:
               383
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               260, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               526
               

               Alignm identity:
               387
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               275, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               525
               

               Alignm identity:
               379
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               222, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               525
               

               Alignm identity:
               386
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               277, 69
               

               Conread position:
               2-506
               

               Cow position:
               
               

               Alignm length:
               514
               

               Alignm identity:
               326
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               250, 60
               

               Conread position:
               2-506
               

               Cow position:
               
               

               Alignm length:
               515
               

               Alignm identity:
               325
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               211, 68
               

               Conread position:
               2-508
               

               Cow position:
               
               

               Alignm length:
               520
               

               Alignm identity:
               381
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               173, 68
               

               Conread position:
               3-282
               

               Cow position:
               
               

               Alignm length:
               280
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               3-322
               

               Cow position:
               
               

               Alignm length:
               320
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               3-363
               

               Cow position:
               
               

               Alignm length:
               362
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               271, 67
               

               Conread position:
               3-371
               

               Cow position:
               
               

               Alignm length:
               370
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               359, 36
               

               Conread position:
               3-403
               

               Cow position:
               
               

               Alignm length:
               412
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               274, 67
               

               Conread position:
               3-465
               

               Cow position:
               
               

               Alignm length:
               475
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 67
               

               Conread position:
               3-486
               

               Cow position:
               
               

               Alignm length:
               494
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               272, 67
               

               Conread position:
               3-486
               

               Cow position:
               
               

               Alignm length:
               494
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               272, 67
               

               Conread position:
               3-487
               

               Cow position:
               
               

               Alignm length:
               492
               

               Alignm identity:
               303
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               178, 36
               

               Conread position:
               3-487
               

               Cow position:
               
               

               Alignm length:
               490
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               169, 67
               

               Conread position:
               3-487
               

               Cow position:
               
               

               Alignm length:
               496
               

               Alignm identity:
               369
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               255, 67
               

               Conread position:
               3-506
               

               Cow position:
               
               

               Alignm length:
               514
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               265, 67
               

               Conread position:
               3-514
               

               Cow position:
               
               

               Alignm length:
               521
               

               Alignm identity:
               365
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               366, 36
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               525
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               270, 67
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               525
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               270, 36
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               515
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               484, 58
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               525
               

               Alignm identity:
               375
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 68
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               535
               

               Alignm identity:
               366
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               344, 67
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               525
               

               Alignm identity:
               377
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               181, 67
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               519
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               227, 67
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               526
               

               Alignm identity:
               390
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               275, 56
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               525
               

               Alignm identity:
               386
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               265, 67
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               525
               

               Alignm identity:
               376
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               265, 67
               

               Conread position:
               3-516
               

               Cow position:
               
               

               Alignm length:
               519
               

               Alignm identity:
               372
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               269, 67
               

               Conread position:
               4-506
               

               Cow position:
               
               

               Alignm length:
               507
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               264, 66
               

               Conread position:
               5-486
               

               Cow position:
               
               

               Alignm length:
               495
               

               Alignm identity:
               365
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 72
               

               Conread position:
               5-499
               

               Cow position:
               
               

               Alignm length:
               504
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 43
               

               Conread position:
               5-515
               

               Cow position:
               
               

               Alignm length:
               519
               

               Alignm identity:
               333
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               126, 15
               

               Conread position:
               7-515
               

               Cow position:
               
               

               Alignm length:
               518
               

               Alignm identity:
               374
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 63
               

               Conread position:
               8-336
               

               Cow position:
               
               

               Alignm length:
               329
               

               Alignm identity:
               221
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               10-480
               

               Cow position:
               
               

               Alignm length:
               474
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               273, 66
               

               Conread position:
               21-516
               

               Cow position:
               
               

               Alignm length:
               501
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               242, 18
               

               Conread position:
               29-515
               

               Cow position:
               
               

               Alignm length:
               502
               

               Alignm identity:
               371
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 26
               

               Conread position:
               39-504
               

               Cow position:
               
               

               Alignm length:
               477
               

               Alignm identity:
               314
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               258, 32
               

               Conread position:
               94-369
               

               Cow position:
               
               

               Alignm length:
               282
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               174, 64
               

               Conread position:
               95-515
               

               Cow position:
               
               

               Alignm length:
               433
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               173, 63
               

               Conread position:
               98-333
               

               Cow position:
               
               

               Alignm length:
               239
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               87, 15
               

               Conread position:
               102-515
               

               Cow position:
               
               

               Alignm length:
               426
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               169, 56
               

               Conread position:
               117-506
               

               Cow position:
               
               

               Alignm length:
               390
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               127-515
               

               Cow position:
               
               

               Alignm length:
               396
               

               Alignm identity:
               269
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               13, 32
               

               Conread position:
               134-453
               

               Cow position:
               
               

               Alignm length:
               324
               

               Alignm identity:
               226
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               144, 18
               

               Conread position:
               179-515
               

               Cow position:
               
               

               Alignm length:
               348
               

               Alignm identity:
               231
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               22, 51
               

               Conread position:
               179-515
               

               Cow position:
               
               

               Alignm length:
               348
               

               Alignm identity:
               230
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               241, 32
               

               Conread position:
               179-515
               

               Cow position:
               
               

               Alignm length:
               349
               

               Alignm identity:
               230
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               192, 32
               

               Conread position:
               182-515
               

               Cow position:
               
               

               Alignm length:
               344
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 313
               

               Conread position:
               202-442
               

               Cow position:
               
               

               Alignm length:
               252
               

               Alignm identity:
               186
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               207-513
               

               Cow position:
               
               

               Alignm length:
               307
               

               Alignm identity:
               215
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               229-515
               

               Cow position:
               
               

               Alignm length:
               293
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 160
               

               Conread position:
               246-483
               

               Cow position:
               
               

               Alignm length:
               241
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-20
               

               Alignm gaps (pig, cow):
               33, 115
               

               Conread position:
               264-515
               

               Cow position:
               
               

               Alignm length:
               261
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 0
               

               Conread position:
               273-515
               

               Cow position:
               
               

               Alignm length:
               254
               

               Alignm identity:
               190
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               273-515
               

               Cow position:
               
               

               Alignm length:
               251
               

               Alignm identity:
               172
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               96, 0
               

               Conread position:
               280-512
               

               Cow position:
               
               

               Alignm length:
               242
               

               Alignm identity:
               181
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               98, 0
               

               Conread position:
               280-515
               

               Cow position:
               
               

               Alignm length:
               246
               

               Alignm identity:
               186
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               91, 0
               

               Conread position:
               335-515
               

               Cow position:
               
               

               Alignm length:
               190
               

               Alignm identity:
               133
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               337-506
               

               Cow position:
               
               

               Alignm length:
               170
               

               Alignm identity:
               124
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               14, 0
               
Show alignments to all cow chromosomes.