Cow genome map

Conread name: Ss1.1-rpigca0_007986.5

Conread position: 1-220
Cow position: chr4:60264775-60264983 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 154
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 69, 0

Conread position: 1-281
Cow position: chr4:33073317-33073581 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 200
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 69, 0

Conread position: 1-281
Cow position: chr4:57979421-57979147 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 194
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 54, 0

Conread position: 1-292
Cow position: chr4:969251-969537 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 197
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 61, 73

Conread position: 1-297
Cow position: chr4:15263201-15263485 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 203
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 217, 10

Conread position: 1-305
Cow position: chr4:26887069-26887354 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 222
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 206, 69

Conread position: 1-498
Cow position: chr4:16359676-16359178 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 370, 69

Conread position: 1-498
Cow position: chr4:31669103-31668606 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 284, 69

Conread position: 1-499
Cow position: chr4:34185078-34185564 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 344, 102

Conread position: 1-502
Cow position: chr4:17926462-17926967 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 75

Conread position: 1-507
Cow position: chr4:3830274-3829777 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 324
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 61, 124

Conread position: 1-507
Cow position: chr4:4176222-4175729 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 316
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 154, 61

Conread position: 1-512
Cow position: chr4:355703-355189 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 361, 75

Conread position: 1-514
Cow position: chr4:1371211-1371713 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 77

Conread position: 1-515
Cow position: chr4:3961384-3960866 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 370, 60

Conread position: 1-515
Cow position: chr4:4905939-4905425 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 268, 69

Conread position: 1-515
Cow position: chr4:8598364-8598857 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 282, 69

Conread position: 1-515
Cow position: chr4:13492369-13491843 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 69

Conread position: 1-515
Cow position: chr4:18516689-18516166 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 277, 69

Conread position: 1-515
Cow position: chr4:24445408-24445929 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 267, 75

Conread position: 1-515
Cow position: chr4:25599826-25600330 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 69

Conread position: 1-515
Cow position: chr4:29531921-29532444 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 69

Conread position: 1-515
Cow position: chr4:36896166-36895644 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 267, 69

Conread position: 1-515
Cow position: chr4:40824460-40824980 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 348
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 141, 61

Conread position: 1-515
Cow position: chr4:41331230-41330710 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 260, 69

Conread position: 1-515
Cow position: chr4:43880902-43880381 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 69

Conread position: 1-515
Cow position: chr4:45049505-45050025 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 69

Conread position: 1-515
Cow position: chr4:48026190-48025676 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 277, 69

Conread position: 2-506
Cow position: chr4:6214766-6215263 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 326
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 250, 60

Conread position: 2-506
Cow position: chr4:40405804-40406296 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 325
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 211, 68

Conread position: 2-508
Cow position: chr4:44724875-44724360 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 68

Conread position: 3-282
Cow position: chr4:11618644-11618377 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 0

Conread position: 3-322
Cow position: chr4:27333235-27332926 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 0

Conread position: 3-363
Cow position: chr4:66179197-66179554 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 67

Conread position: 3-371
Cow position: chr4:18424734-18425095 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 359, 36

Conread position: 3-403
Cow position: chr4:32211958-32211550 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 274, 67

Conread position: 3-465
Cow position: chr4:13547820-13547351 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 67

Conread position: 3-486
Cow position: chr4:528784-528294 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 272, 67

Conread position: 3-486
Cow position: chr4:3125571-3125082 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 272, 67

Conread position: 3-487
Cow position: chr4:38903993-38903520 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 303
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 178, 36

Conread position: 3-487
Cow position: chr4:47717815-47718290 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 67

Conread position: 3-487
Cow position: chr4:66925790-66925307 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 255, 67

Conread position: 3-506
Cow position: chr4:47764379-47764888 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 265, 67

Conread position: 3-514
Cow position: chr4:602784-602268 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 366, 36

Conread position: 3-515
Cow position: chr4:101142-101658 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 67

Conread position: 3-515
Cow position: chr4:1930833-1931350 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 36

Conread position: 3-515
Cow position: chr4:5879957-5879456 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 484, 58

Conread position: 3-515
Cow position: chr4:12241427-12241944 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 68

Conread position: 3-515
Cow position: chr4:16056393-16055864 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 344, 67

Conread position: 3-515
Cow position: chr4:28830819-28830315 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 67

Conread position: 3-515
Cow position: chr4:30307668-30308163 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 227, 67

Conread position: 3-515
Cow position: chr4:33493599-33493081 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 56

Conread position: 3-515
Cow position: chr4:43319845-43320366 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 265, 67

Conread position: 3-515
Cow position: chr4:65223743-65224264 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 265, 67

Conread position: 3-516
Cow position: chr4:6268837-6269350 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 269, 67

Conread position: 4-506
Cow position: chr4:158305-157810 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 264, 66

Conread position: 5-486
Cow position: chr4:46663983-46663502 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 72

Conread position: 5-499
Cow position: chr4:21338215-21338692 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 43

Conread position: 5-515
Cow position: chr4:11393550-11394052 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 333
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 126, 15

Conread position: 7-515
Cow position: chr4:1464138-1464644 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 63

Conread position: 8-336
Cow position: chr4:496171-496479 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 221
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 53, 0

Conread position: 10-480
Cow position: chr4:39272156-39272612 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 66

Conread position: 21-516
Cow position: chr4:11384177-11383700 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 242, 18

Conread position: 29-515
Cow position: chr4:1049859-1050351 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 26

Conread position: 39-504
Cow position: chr4:51044143-51044595 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 314
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 258, 32

Conread position: 94-369
Cow position: chr4:10408482-10408203 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 64

Conread position: 95-515
Cow position: chr4:23114476-23114906 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 63

Conread position: 98-333
Cow position: chr4:12607808-12608040 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 178
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 87, 15

Conread position: 102-515
Cow position: chr4:6490655-6491076 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 56

Conread position: 117-506
Cow position: chr4:54190533-54190158 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 0

Conread position: 127-515
Cow position: chr4:58883013-58883393 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 269
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 13, 32

Conread position: 134-453
Cow position: chr4:27442751-27442433 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 226
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 144, 18

Conread position: 179-515
Cow position: chr4:6449273-6449613 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 231
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 22, 51

Conread position: 179-515
Cow position: chr4:60630637-60630974 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 230
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 241, 32

Conread position: 179-515
Cow position: chr4:60673516-60673178 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 230
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 192, 32

Conread position: 182-515
Cow position: chr4:9311852-9311511 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 313

Conread position: 202-442
Cow position: chr4:60265191-60265442 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 186
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 45, 0

Conread position: 207-513
Cow position: chr4:21359235-21358942 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 215
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 68, 0

Conread position: 229-515
Cow position: chr4:46712773-46713062 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 160

Conread position: 246-483
Cow position: chr4:64982969-64982731 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 157
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 33, 115

Conread position: 264-515
Cow position: chr4:33073854-33074114 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 0

Conread position: 273-515
Cow position: chr4:41118650-41118397 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 190
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 69, 0

Conread position: 273-515
Cow position: chr4:41954315-41954065 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 172
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 96, 0

Conread position: 280-512
Cow position: chr4:57978931-57978690 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 181
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 98, 0

Conread position: 280-515
Cow position: chr4:3358239-3357994 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 186
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 91, 0

Conread position: 335-515
Cow position: chr4:54955432-54955243 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 133
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 26, 0

Conread position: 337-506
Cow position: chr4:10408187-10408023 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 124
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 14, 0

Show alignments to all cow chromosomes.