Cow genome map
| Conread name: | Ss1.1-rpigca0_007986.5 |
| Conread position: | 1-236 |
| Cow position: | chr5:26068830-26069058 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 1-269 |
| Cow position: | chr5:41962351-41962612 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 69 |
| Conread position: | 1-343 |
| Cow position: | chr5:47073786-47073457 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 232 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 43, 31 |
| Conread position: | 1-370 |
| Cow position: | chr5:46005489-46005865 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 166 |
| Conread position: | 1-371 |
| Cow position: | chr5:61019957-61020324 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 58, 117 |
| Conread position: | 1-443 |
| Cow position: | chr5:31101710-31102154 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 69 |
| Conread position: | 1-478 |
| Cow position: | chr5:26508328-26507862 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 296 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 130, 87 |
| Conread position: | 1-486 |
| Cow position: | chr5:56857817-56858306 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 323 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 148, 38 |
| Conread position: | 1-508 |
| Cow position: | chr5:34696470-34695956 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 248, 71 |
| Conread position: | 1-513 |
| Cow position: | chr5:27682882-27683377 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 468, 71 |
| Conread position: | 1-513 |
| Cow position: | chr5:46630554-46631045 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 263, 69 |
| Conread position: | 1-515 |
| Cow position: | chr5:1341906-1342431 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 75 |
| Conread position: | 1-515 |
| Cow position: | chr5:2430245-2430767 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 267, 69 |
| Conread position: | 1-515 |
| Cow position: | chr5:2914338-2913815 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 75 |
| Conread position: | 1-515 |
| Cow position: | chr5:3504363-3504877 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 69 |
| Conread position: | 1-515 |
| Cow position: | chr5:6158310-6158828 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 13 |
| Conread position: | 1-515 |
| Cow position: | chr5:7273739-7273231 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 377, 69 |
| Conread position: | 1-515 |
| Cow position: | chr5:24098536-24098011 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 279, 69 |
| Conread position: | 1-515 |
| Cow position: | chr5:30579209-30578690 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 69 |
| Conread position: | 1-515 |
| Cow position: | chr5:32673856-32674359 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 1-515 |
| Cow position: | chr5:32945761-32945245 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 69 |
| Conread position: | 1-515 |
| Cow position: | chr5:37732233-37731710 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 69 |
| Conread position: | 1-515 |
| Cow position: | chr5:46738698-46739217 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 69 |
| Conread position: | 1-515 |
| Cow position: | chr5:48808828-48809347 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 335, 69 |
| Conread position: | 1-515 |
| Cow position: | chr5:49119394-49119913 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 364, 69 |
| Conread position: | 1-515 |
| Cow position: | chr5:55627875-55627369 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 377, 69 |
| Conread position: | 1-515 |
| Cow position: | chr5:57482659-57483176 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 69 |
| Conread position: | 1-515 |
| Cow position: | chr5:61273295-61273792 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 382, 50 |
| Conread position: | 1-515 |
| Cow position: | chr5:64782131-64782648 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 267, 69 |
| Conread position: | 2-304 |
| Cow position: | chr5:57366135-57366432 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 2-375 |
| Cow position: | chr5:53626880-53627244 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 247 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 14, 60 |
| Conread position: | 2-515 |
| Cow position: | chr5:4068876-4068355 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 256, 68 |
| Conread position: | 2-515 |
| Cow position: | chr5:46644573-46644075 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 343, 68 |
| Conread position: | 2-515 |
| Cow position: | chr5:49593569-49594086 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 68 |
| Conread position: | 3-122 |
| Cow position: | chr5:52805251-52805134 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 3-198 |
| Cow position: | chr5:5317872-5318063 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 3-214 |
| Cow position: | chr5:58819749-58819957 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 3-278 |
| Cow position: | chr5:6589136-6589408 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 3-328 |
| Cow position: | chr5:49518545-49518227 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 3-371 |
| Cow position: | chr5:29042397-29042029 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 67 |
| Conread position: | 3-371 |
| Cow position: | chr5:44459368-44459000 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 67 |
| Conread position: | 3-371 |
| Cow position: | chr5:54932333-54932700 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 67 |
| Conread position: | 3-423 |
| Cow position: | chr5:4088690-4088264 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 248, 67 |
| Conread position: | 3-479 |
| Cow position: | chr5:14380048-14379572 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 276, 67 |
| Conread position: | 3-486 |
| Cow position: | chr5:18665847-18665357 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 67 |
| Conread position: | 3-486 |
| Cow position: | chr5:26769695-26769209 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 48 |
| Conread position: | 3-486 |
| Cow position: | chr5:47831222-47831697 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 25 |
| Conread position: | 3-486 |
| Cow position: | chr5:59482139-59481648 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 67 |
| Conread position: | 3-487 |
| Cow position: | chr5:9686543-9687012 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 71 |
| Conread position: | 3-487 |
| Cow position: | chr5:27652098-27652566 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 70 |
| Conread position: | 3-487 |
| Cow position: | chr5:28031362-28030888 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 67 |
| Conread position: | 3-489 |
| Cow position: | chr5:16103893-16104370 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 312 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 128, 25 |
| Conread position: | 3-489 |
| Cow position: | chr5:26089946-26090436 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 276, 69 |
| Conread position: | 3-500 |
| Cow position: | chr5:32733367-32733864 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 67 |
| Conread position: | 3-506 |
| Cow position: | chr5:2531156-2530653 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 67 |
| Conread position: | 3-506 |
| Cow position: | chr5:32772367-32771859 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 67 |
| Conread position: | 3-506 |
| Cow position: | chr5:49182154-49181664 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 73 |
| Conread position: | 3-506 |
| Cow position: | chr5:58195887-58195380 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 67 |
| Conread position: | 3-506 |
| Cow position: | chr5:59060506-59059996 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 67 |
| Conread position: | 3-513 |
| Cow position: | chr5:10776379-10776878 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 256, 67 |
| Conread position: | 3-513 |
| Cow position: | chr5:10918683-10918162 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 67 |
| Conread position: | 3-513 |
| Cow position: | chr5:29009240-29008729 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 57 |
| Conread position: | 3-515 |
| Cow position: | chr5:415837-416355 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 265, 67 |
| Conread position: | 3-515 |
| Cow position: | chr5:3964349-3963844 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 26 |
| Conread position: | 3-515 |
| Cow position: | chr5:10843989-10844508 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 67 |
| Conread position: | 3-515 |
| Cow position: | chr5:24576800-24576279 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 68 |
| Conread position: | 3-515 |
| Cow position: | chr5:26079333-26079853 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 265, 67 |
| Conread position: | 3-515 |
| Cow position: | chr5:27909387-27909903 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 366, 36 |
| Conread position: | 3-515 |
| Cow position: | chr5:31706461-31705942 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 67 |
| Conread position: | 3-515 |
| Cow position: | chr5:46663888-46663370 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 145 |
| Conread position: | 3-515 |
| Cow position: | chr5:46775963-46775457 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 256, 67 |
| Conread position: | 3-515 |
| Cow position: | chr5:53715139-53714621 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 366, 67 |
| Conread position: | 4-506 |
| Cow position: | chr5:34202824-34202330 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 34 |
| Conread position: | 5-335 |
| Cow position: | chr5:7811671-7811993 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 219 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 17, 72 |
| Conread position: | 5-371 |
| Cow position: | chr5:26054642-26054287 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 238 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 16, 72 |
| Conread position: | 5-500 |
| Cow position: | chr5:41551044-41551540 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 67 |
| Conread position: | 5-507 |
| Cow position: | chr5:14659211-14659717 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 334 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 240, 71 |
| Conread position: | 5-515 |
| Cow position: | chr5:4019315-4019833 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 71 |
| Conread position: | 5-515 |
| Cow position: | chr5:28007085-28006595 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 382, 18 |
| Conread position: | 5-515 |
| Cow position: | chr5:48468396-48468907 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 263, 53 |
| Conread position: | 6-481 |
| Cow position: | chr5:63479995-63480466 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 299 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 207, 70 |
| Conread position: | 6-486 |
| Cow position: | chr5:14346498-14346967 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 304 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 118, 64 |
| Conread position: | 6-486 |
| Cow position: | chr5:39164916-39165402 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 267, 64 |
| Conread position: | 6-486 |
| Cow position: | chr5:51162791-51162313 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 309 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 190, 64 |
| Conread position: | 6-506 |
| Cow position: | chr5:23228138-23227638 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 64 |
| Conread position: | 7-359 |
| Cow position: | chr5:25206859-25207211 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 70 |
| Conread position: | 7-425 |
| Cow position: | chr5:41023071-41023474 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 100, 69 |
| Conread position: | 7-495 |
| Cow position: | chr5:52610216-52609742 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 312 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 65, 88 |
| Conread position: | 7-515 |
| Cow position: | chr5:49101499-49101008 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 330 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 355, 55 |
| Conread position: | 7-515 |
| Cow position: | chr5:58060957-58061454 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 339 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 295, 69 |
| Conread position: | 8-515 |
| Cow position: | chr5:54792732-54793253 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 54 |
| Conread position: | 9-371 |
| Cow position: | chr5:6188442-6188088 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 351, 61 |
| Conread position: | 15-379 |
| Cow position: | chr5:27570028-27569657 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 57 |
| Conread position: | 32-515 |
| Cow position: | chr5:45182253-45182727 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 470, 38 |
| Conread position: | 48-486 |
| Cow position: | chr5:51771508-51771943 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 9 |
| Conread position: | 48-487 |
| Cow position: | chr5:45700124-45699676 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 22 |
| Conread position: | 49-515 |
| Cow position: | chr5:41529734-41530196 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 21 |
| Conread position: | 51-515 |
| Cow position: | chr5:3785640-3785176 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 320, 19 |
| Conread position: | 66-486 |
| Cow position: | chr5:24330114-24329690 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 58 |
| Conread position: | 67-515 |
| Cow position: | chr5:4385049-4384600 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 100 |
| Conread position: | 72-513 |
| Cow position: | chr5:46659548-46659080 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 53 |
| Conread position: | 79-515 |
| Cow position: | chr5:12681696-12682130 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 14 |
| Conread position: | 88-506 |
| Cow position: | chr5:27488821-27488407 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 70 |
| Conread position: | 94-514 |
| Cow position: | chr5:59144575-59144145 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 23 |
| Conread position: | 95-515 |
| Cow position: | chr5:30087927-30088342 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 30 |
| Conread position: | 96-506 |
| Cow position: | chr5:28570488-28570081 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 272 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 34, 29 |
| Conread position: | 96-516 |
| Cow position: | chr5:27000973-27000573 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 275 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 263, 18 |
| Conread position: | 98-464 |
| Cow position: | chr5:12644095-12644457 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 31 |
| Conread position: | 104-312 |
| Cow position: | chr5:23768078-23767875 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 171, 58 |
| Conread position: | 107-404 |
| Cow position: | chr5:29123019-29123318 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 24, 18 |
| Conread position: | 125-515 |
| Cow position: | chr5:35299828-35299428 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 33 |
| Conread position: | 139-515 |
| Cow position: | chr5:23716198-23716576 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 43 |
| Conread position: | 141-515 |
| Cow position: | chr5:76123803-76124180 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 254 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 141, 17 |
| Conread position: | 143-281 |
| Cow position: | chr5:18653754-18653618 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 159-516 |
| Cow position: | chr5:49128972-49128623 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 235 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 148, 16 |
| Conread position: | 171-515 |
| Cow position: | chr5:18663966-18663612 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 213 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 108, 7 |
| Conread position: | 177-507 |
| Cow position: | chr5:24109323-24109661 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 102, 21 |
| Conread position: | 179-515 |
| Cow position: | chr5:59282475-59282127 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 180-486 |
| Cow position: | chr5:68471851-68472166 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 33, 18 |
| Conread position: | 182-503 |
| Cow position: | chr5:34167769-34167456 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 317, 62 |
| Conread position: | 185-487 |
| Cow position: | chr5:52805041-52804729 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 17 |
| Conread position: | 185-514 |
| Cow position: | chr5:26095430-26095109 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 64, 121 |
| Conread position: | 186-515 |
| Cow position: | chr5:37755433-37755774 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 191-449 |
| Cow position: | chr5:12185361-12185093 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 203-515 |
| Cow position: | chr5:6519575-6519269 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 72 |
| Conread position: | 208-354 |
| Cow position: | chr5:57977038-57976885 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 217-516 |
| Cow position: | chr5:58747559-58747261 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 221 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 66, 127 |
| Conread position: | 235-515 |
| Cow position: | chr5:23960453-23960743 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 240-506 |
| Cow position: | chr5:10443555-10443824 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 129, 31 |
| Conread position: | 242-477 |
| Cow position: | chr5:51319640-51319869 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 28, 13 |
| Conread position: | 263-512 |
| Cow position: | chr5:41963305-41963558 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 175 |
| Conread position: | 265-515 |
| Cow position: | chr5:54620092-54619840 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 10, 235 |
| Conread position: | 275-515 |
| Cow position: | chr5:42504369-42504123 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 119, 102 |
| Conread position: | 287-515 |
| Cow position: | chr5:23687868-23688106 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 332-515 |
| Cow position: | chr5:73489769-73489961 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 23, 0 |
Show alignments to all cow chromosomes.