Cow genome map

Conread name: Ss1.1-rpigca0_007986.5

Conread position: 1-236
Cow position:
Alignm length: 236
Alignm identity: 168
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 72, 0

Conread position: 1-269
Cow position:
Alignm length: 270
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 69

Conread position: 1-343
Cow position:
Alignm length: 349
Alignm identity: 232
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 43, 31

Conread position: 1-370
Cow position:
Alignm length: 379
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 166

Conread position: 1-371
Cow position:
Alignm length: 380
Alignm identity: 251
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 58, 117

Conread position: 1-443
Cow position:
Alignm length: 450
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 229, 69

Conread position: 1-478
Cow position:
Alignm length: 485
Alignm identity: 296
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 130, 87

Conread position: 1-486
Cow position:
Alignm length: 506
Alignm identity: 323
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 148, 38

Conread position: 1-508
Cow position:
Alignm length: 521
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 248, 71

Conread position: 1-513
Cow position:
Alignm length: 516
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 468, 71

Conread position: 1-513
Cow position:
Alignm length: 518
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 69

Conread position: 1-515
Cow position:
Alignm length: 530
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 75

Conread position: 1-515
Cow position:
Alignm length: 527
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 267, 69

Conread position: 1-515
Cow position:
Alignm length: 527
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 274, 75

Conread position: 1-515
Cow position:
Alignm length: 522
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 69

Conread position: 1-515
Cow position:
Alignm length: 527
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 13

Conread position: 1-515
Cow position:
Alignm length: 524
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 377, 69

Conread position: 1-515
Cow position:
Alignm length: 529
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 279, 69

Conread position: 1-515
Cow position:
Alignm length: 527
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 69

Conread position: 1-515
Cow position:
Alignm length: 515
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 1-515
Cow position:
Alignm length: 528
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 280, 69

Conread position: 1-515
Cow position:
Alignm length: 528
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 69

Conread position: 1-515
Cow position:
Alignm length: 527
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 69

Conread position: 1-515
Cow position:
Alignm length: 525
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 335, 69

Conread position: 1-515
Cow position:
Alignm length: 524
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 364, 69

Conread position: 1-515
Cow position:
Alignm length: 524
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 377, 69

Conread position: 1-515
Cow position:
Alignm length: 526
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 69

Conread position: 1-515
Cow position:
Alignm length: 516
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 382, 50

Conread position: 1-515
Cow position:
Alignm length: 525
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 267, 69

Conread position: 2-304
Cow position:
Alignm length: 303
Alignm identity: 199
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 71, 0

Conread position: 2-375
Cow position:
Alignm length: 381
Alignm identity: 247
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 14, 60

Conread position: 2-515
Cow position:
Alignm length: 527
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 256, 68

Conread position: 2-515
Cow position:
Alignm length: 522
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 343, 68

Conread position: 2-515
Cow position:
Alignm length: 528
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 68

Conread position: 3-122
Cow position:
Alignm length: 120
Alignm identity: 96
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 33, 0

Conread position: 3-198
Cow position:
Alignm length: 196
Alignm identity: 138
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 69, 0

Conread position: 3-214
Cow position:
Alignm length: 212
Alignm identity: 157
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 67, 0

Conread position: 3-278
Cow position:
Alignm length: 276
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 0

Conread position: 3-328
Cow position:
Alignm length: 326
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 0

Conread position: 3-371
Cow position:
Alignm length: 372
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 67

Conread position: 3-371
Cow position:
Alignm length: 372
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 272, 67

Conread position: 3-371
Cow position:
Alignm length: 372
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 67

Conread position: 3-423
Cow position:
Alignm length: 432
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 248, 67

Conread position: 3-479
Cow position:
Alignm length: 480
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 276, 67

Conread position: 3-486
Cow position:
Alignm length: 494
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 274, 67

Conread position: 3-486
Cow position:
Alignm length: 496
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 48

Conread position: 3-486
Cow position:
Alignm length: 489
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 25

Conread position: 3-486
Cow position:
Alignm length: 498
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 272, 67

Conread position: 3-487
Cow position:
Alignm length: 491
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 71

Conread position: 3-487
Cow position:
Alignm length: 505
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 70

Conread position: 3-487
Cow position:
Alignm length: 487
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 280, 67

Conread position: 3-489
Cow position:
Alignm length: 499
Alignm identity: 312
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 128, 25

Conread position: 3-489
Cow position:
Alignm length: 502
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 276, 69

Conread position: 3-500
Cow position:
Alignm length: 509
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 67

Conread position: 3-506
Cow position:
Alignm length: 510
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 272, 67

Conread position: 3-506
Cow position:
Alignm length: 515
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 67

Conread position: 3-506
Cow position:
Alignm length: 508
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 73

Conread position: 3-506
Cow position:
Alignm length: 516
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 67

Conread position: 3-506
Cow position:
Alignm length: 516
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 67

Conread position: 3-513
Cow position:
Alignm length: 522
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 256, 67

Conread position: 3-513
Cow position:
Alignm length: 525
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 268, 67

Conread position: 3-513
Cow position:
Alignm length: 520
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 57

Conread position: 3-515
Cow position:
Alignm length: 523
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 265, 67

Conread position: 3-515
Cow position:
Alignm length: 518
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 272, 26

Conread position: 3-515
Cow position:
Alignm length: 525
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 67

Conread position: 3-515
Cow position:
Alignm length: 526
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 68

Conread position: 3-515
Cow position:
Alignm length: 525
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 265, 67

Conread position: 3-515
Cow position:
Alignm length: 522
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 366, 36

Conread position: 3-515
Cow position:
Alignm length: 523
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 67

Conread position: 3-515
Cow position:
Alignm length: 524
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 145

Conread position: 3-515
Cow position:
Alignm length: 522
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 256, 67

Conread position: 3-515
Cow position:
Alignm length: 522
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 366, 67

Conread position: 4-506
Cow position:
Alignm length: 515
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 34

Conread position: 5-335
Cow position:
Alignm length: 332
Alignm identity: 219
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 17, 72

Conread position: 5-371
Cow position:
Alignm length: 371
Alignm identity: 238
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 16, 72

Conread position: 5-500
Cow position:
Alignm length: 504
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 67

Conread position: 5-507
Cow position:
Alignm length: 520
Alignm identity: 334
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 240, 71

Conread position: 5-515
Cow position:
Alignm length: 523
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 71

Conread position: 5-515
Cow position:
Alignm length: 516
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 382, 18

Conread position: 5-515
Cow position:
Alignm length: 521
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 53

Conread position: 6-481
Cow position:
Alignm length: 488
Alignm identity: 299
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 207, 70

Conread position: 6-486
Cow position:
Alignm length: 485
Alignm identity: 304
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 118, 64

Conread position: 6-486
Cow position:
Alignm length: 491
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 267, 64

Conread position: 6-486
Cow position:
Alignm length: 492
Alignm identity: 309
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 190, 64

Conread position: 6-506
Cow position:
Alignm length: 511
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 64

Conread position: 7-359
Cow position:
Alignm length: 357
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 70

Conread position: 7-425
Cow position:
Alignm length: 425
Alignm identity: 266
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 100, 69

Conread position: 7-495
Cow position:
Alignm length: 497
Alignm identity: 312
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 65, 88

Conread position: 7-515
Cow position:
Alignm length: 518
Alignm identity: 330
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 355, 55

Conread position: 7-515
Cow position:
Alignm length: 518
Alignm identity: 339
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 295, 69

Conread position: 8-515
Cow position:
Alignm length: 527
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 54

Conread position: 9-371
Cow position:
Alignm length: 366
Alignm identity: 238
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 351, 61

Conread position: 15-379
Cow position:
Alignm length: 376
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 57

Conread position: 32-515
Cow position:
Alignm length: 485
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 470, 38

Conread position: 48-486
Cow position:
Alignm length: 445
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 9

Conread position: 48-487
Cow position:
Alignm length: 454
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 229, 22

Conread position: 49-515
Cow position:
Alignm length: 476
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 240, 21

Conread position: 51-515
Cow position:
Alignm length: 474
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 19

Conread position: 66-486
Cow position:
Alignm length: 435
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 58

Conread position: 67-515
Cow position:
Alignm length: 459
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 100

Conread position: 72-513
Cow position:
Alignm length: 473
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 53

Conread position: 79-515
Cow position:
Alignm length: 447
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 14

Conread position: 88-506
Cow position:
Alignm length: 424
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 70

Conread position: 94-514
Cow position:
Alignm length: 435
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 23

Conread position: 95-515
Cow position:
Alignm length: 425
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 30

Conread position: 96-506
Cow position:
Alignm length: 420
Alignm identity: 272
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 34, 29

Conread position: 96-516
Cow position:
Alignm length: 425
Alignm identity: 275
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 263, 18

Conread position: 98-464
Cow position:
Alignm length: 379
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 239, 31

Conread position: 104-312
Cow position:
Alignm length: 212
Alignm identity: 155
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 171, 58

Conread position: 107-404
Cow position:
Alignm length: 309
Alignm identity: 204
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 24, 18

Conread position: 125-515
Cow position:
Alignm length: 403
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 33

Conread position: 139-515
Cow position:
Alignm length: 386
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 43

Conread position: 141-515
Cow position:
Alignm length: 385
Alignm identity: 254
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 141, 17

Conread position: 143-281
Cow position:
Alignm length: 139
Alignm identity: 103
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 15, 0

Conread position: 159-516
Cow position:
Alignm length: 365
Alignm identity: 235
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 148, 16

Conread position: 171-515
Cow position:
Alignm length: 357
Alignm identity: 213
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 108, 7

Conread position: 177-507
Cow position:
Alignm length: 341
Alignm identity: 214
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 102, 21

Conread position: 179-515
Cow position:
Alignm length: 349
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 0

Conread position: 180-486
Cow position:
Alignm length: 317
Alignm identity: 205
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 33, 18

Conread position: 182-503
Cow position:
Alignm length: 323
Alignm identity: 210
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 317, 62

Conread position: 185-487
Cow position:
Alignm length: 315
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 17

Conread position: 185-514
Cow position:
Alignm length: 333
Alignm identity: 221
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 64, 121

Conread position: 186-515
Cow position:
Alignm length: 342
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 0

Conread position: 191-449
Cow position:
Alignm length: 269
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 0

Conread position: 203-515
Cow position:
Alignm length: 316
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 72

Conread position: 208-354
Cow position:
Alignm length: 154
Alignm identity: 123
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 69, 0

Conread position: 217-516
Cow position:
Alignm length: 306
Alignm identity: 221
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 66, 127

Conread position: 235-515
Cow position:
Alignm length: 291
Alignm identity: 203
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 40, 0

Conread position: 240-506
Cow position:
Alignm length: 276
Alignm identity: 192
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 129, 31

Conread position: 242-477
Cow position:
Alignm length: 239
Alignm identity: 170
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 28, 13

Conread position: 263-512
Cow position:
Alignm length: 258
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 175

Conread position: 265-515
Cow position:
Alignm length: 254
Alignm identity: 170
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 10, 235

Conread position: 275-515
Cow position:
Alignm length: 249
Alignm identity: 167
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 119, 102

Conread position: 287-515
Cow position:
Alignm length: 239
Alignm identity: 171
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 74, 0

Conread position: 332-515
Cow position:
Alignm length: 193
Alignm identity: 138
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 23, 0

Show alignments to all cow chromosomes.