Cow genome map

Conread name: Ss1.1-rpigca0_007986.5

Conread position: 1-282
Cow position:
Alignm length: 287
Alignm identity: 189
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 41, 80

Conread position: 1-282
Cow position:
Alignm length: 282
Alignm identity: 205
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 69, 0

Conread position: 1-328
Cow position:
Alignm length: 331
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 278, 69

Conread position: 1-345
Cow position:
Alignm length: 351
Alignm identity: 242
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 47, 76

Conread position: 1-363
Cow position:
Alignm length: 367
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 245, 69

Conread position: 1-412
Cow position:
Alignm length: 419
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 69

Conread position: 1-452
Cow position:
Alignm length: 463
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 20

Conread position: 1-454
Cow position:
Alignm length: 467
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 69

Conread position: 1-457
Cow position:
Alignm length: 464
Alignm identity: 296
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 132, 33

Conread position: 1-471
Cow position:
Alignm length: 476
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 260, 60

Conread position: 1-486
Cow position:
Alignm length: 498
Alignm identity: 306
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 56, 117

Conread position: 1-507
Cow position:
Alignm length: 529
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 69

Conread position: 1-513
Cow position:
Alignm length: 525
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 50

Conread position: 1-513
Cow position:
Alignm length: 524
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 20

Conread position: 1-513
Cow position:
Alignm length: 524
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 277, 69

Conread position: 1-513
Cow position:
Alignm length: 517
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 27

Conread position: 1-514
Cow position:
Alignm length: 530
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 69

Conread position: 1-514
Cow position:
Alignm length: 526
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 69

Conread position: 1-515
Cow position:
Alignm length: 527
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 69

Conread position: 1-515
Cow position:
Alignm length: 527
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 69

Conread position: 1-515
Cow position:
Alignm length: 529
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 69

Conread position: 1-515
Cow position:
Alignm length: 524
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 266, 71

Conread position: 1-515
Cow position:
Alignm length: 526
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 69

Conread position: 1-515
Cow position:
Alignm length: 518
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 38

Conread position: 1-515
Cow position:
Alignm length: 521
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 360, 69

Conread position: 1-515
Cow position:
Alignm length: 525
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 277, 75

Conread position: 1-515
Cow position:
Alignm length: 520
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 272, 69

Conread position: 1-515
Cow position:
Alignm length: 518
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 282, 69

Conread position: 1-515
Cow position:
Alignm length: 527
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 69

Conread position: 1-515
Cow position:
Alignm length: 528
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 69

Conread position: 1-515
Cow position:
Alignm length: 527
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 69

Conread position: 1-515
Cow position:
Alignm length: 527
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 69

Conread position: 1-515
Cow position:
Alignm length: 525
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 274, 69

Conread position: 1-515
Cow position:
Alignm length: 526
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 69

Conread position: 1-515
Cow position:
Alignm length: 547
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 69

Conread position: 1-515
Cow position:
Alignm length: 522
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 69

Conread position: 1-515
Cow position:
Alignm length: 523
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 281, 69

Conread position: 1-515
Cow position:
Alignm length: 526
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 75

Conread position: 2-252
Cow position:
Alignm length: 252
Alignm identity: 187
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 48, 83

Conread position: 2-296
Cow position:
Alignm length: 300
Alignm identity: 198
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 35, 61

Conread position: 2-515
Cow position:
Alignm length: 526
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 278, 68

Conread position: 2-515
Cow position:
Alignm length: 526
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 276, 68

Conread position: 3-163
Cow position:
Alignm length: 161
Alignm identity: 117
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 67, 0

Conread position: 3-241
Cow position:
Alignm length: 240
Alignm identity: 166
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 118, 67

Conread position: 3-251
Cow position:
Alignm length: 249
Alignm identity: 187
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 73, 0

Conread position: 3-256
Cow position:
Alignm length: 256
Alignm identity: 188
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 8, 154

Conread position: 3-332
Cow position:
Alignm length: 335
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 264, 41

Conread position: 3-371
Cow position:
Alignm length: 372
Alignm identity: 257
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 275, 67

Conread position: 3-470
Cow position:
Alignm length: 482
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 256, 73

Conread position: 3-486
Cow position:
Alignm length: 484
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 0

Conread position: 3-486
Cow position:
Alignm length: 492
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 366, 11

Conread position: 3-500
Cow position:
Alignm length: 509
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 67

Conread position: 3-500
Cow position:
Alignm length: 515
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 67

Conread position: 3-506
Cow position:
Alignm length: 520
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 149

Conread position: 3-506
Cow position:
Alignm length: 515
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 265, 36

Conread position: 3-506
Cow position:
Alignm length: 517
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 276, 67

Conread position: 3-506
Cow position:
Alignm length: 516
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 274, 69

Conread position: 3-514
Cow position:
Alignm length: 525
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 257, 67

Conread position: 3-514
Cow position:
Alignm length: 535
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 274, 67

Conread position: 3-514
Cow position:
Alignm length: 524
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 67

Conread position: 3-515
Cow position:
Alignm length: 529
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 55

Conread position: 3-515
Cow position:
Alignm length: 518
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 268, 68

Conread position: 3-515
Cow position:
Alignm length: 525
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 265, 58

Conread position: 3-515
Cow position:
Alignm length: 525
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 67

Conread position: 3-515
Cow position:
Alignm length: 517
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 349, 67

Conread position: 3-515
Cow position:
Alignm length: 525
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 268, 67

Conread position: 3-515
Cow position:
Alignm length: 525
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 272, 26

Conread position: 3-515
Cow position:
Alignm length: 530
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 241, 67

Conread position: 3-515
Cow position:
Alignm length: 523
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 265, 67

Conread position: 3-516
Cow position:
Alignm length: 519
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 67

Conread position: 4-507
Cow position:
Alignm length: 510
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 367, 36

Conread position: 5-169
Cow position:
Alignm length: 165
Alignm identity: 116
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 65, 0

Conread position: 5-220
Cow position:
Alignm length: 216
Alignm identity: 155
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 65, 0

Conread position: 5-256
Cow position:
Alignm length: 253
Alignm identity: 174
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 109, 72

Conread position: 5-299
Cow position:
Alignm length: 300
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 260, 65

Conread position: 5-424
Cow position:
Alignm length: 427
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 357, 32

Conread position: 5-506
Cow position:
Alignm length: 514
Alignm identity: 314
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 87, 71

Conread position: 5-513
Cow position:
Alignm length: 519
Alignm identity: 341
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 118, 71

Conread position: 6-479
Cow position:
Alignm length: 475
Alignm identity: 288
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 404, 51

Conread position: 7-478
Cow position:
Alignm length: 475
Alignm identity: 297
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 189, 55

Conread position: 7-515
Cow position:
Alignm length: 527
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 63

Conread position: 8-485
Cow position:
Alignm length: 488
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 260, 63

Conread position: 11-513
Cow position:
Alignm length: 513
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 359, 78

Conread position: 15-275
Cow position:
Alignm length: 263
Alignm identity: 174
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 36, 12

Conread position: 18-279
Cow position:
Alignm length: 263
Alignm identity: 187
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 259, 54

Conread position: 33-372
Cow position:
Alignm length: 340
Alignm identity: 223
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 44, 0

Conread position: 33-500
Cow position:
Alignm length: 480
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 37

Conread position: 33-507
Cow position:
Alignm length: 488
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 247, 25

Conread position: 41-295
Cow position:
Alignm length: 256
Alignm identity: 185
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 160, 19

Conread position: 42-467
Cow position:
Alignm length: 436
Alignm identity: 269
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 233, 8

Conread position: 43-516
Cow position:
Alignm length: 476
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 18

Conread position: 46-514
Cow position:
Alignm length: 483
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 8

Conread position: 62-515
Cow position:
Alignm length: 463
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 96

Conread position: 67-506
Cow position:
Alignm length: 454
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 100

Conread position: 67-515
Cow position:
Alignm length: 461
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 207, 85

Conread position: 67-515
Cow position:
Alignm length: 462
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 21

Conread position: 73-486
Cow position:
Alignm length: 430
Alignm identity: 270
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 44, 82

Conread position: 76-514
Cow position:
Alignm length: 453
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 82

Conread position: 78-249
Cow position:
Alignm length: 176
Alignm identity: 129
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 11, 84

Conread position: 81-320
Cow position:
Alignm length: 243
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 77

Conread position: 84-515
Cow position:
Alignm length: 436
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 85

Conread position: 94-515
Cow position:
Alignm length: 434
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 31

Conread position: 107-515
Cow position:
Alignm length: 437
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 52

Conread position: 132-290
Cow position:
Alignm length: 164
Alignm identity: 119
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 114, 47

Conread position: 132-514
Cow position:
Alignm length: 384
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 26

Conread position: 135-370
Cow position:
Alignm length: 236
Alignm identity: 176
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 23, 0

Conread position: 135-513
Cow position:
Alignm length: 391
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 23

Conread position: 135-515
Cow position:
Alignm length: 393
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 23

Conread position: 137-515
Cow position:
Alignm length: 386
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 21

Conread position: 155-515
Cow position:
Alignm length: 373
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 178

Conread position: 156-478
Cow position:
Alignm length: 332
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 20

Conread position: 159-515
Cow position:
Alignm length: 363
Alignm identity: 236
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 5, 20

Conread position: 163-287
Cow position:
Alignm length: 125
Alignm identity: 95
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 179-333
Cow position:
Alignm length: 158
Alignm identity: 117
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 87, 0

Conread position: 181-480
Cow position:
Alignm length: 304
Alignm identity: 203
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 32, 17

Conread position: 182-513
Cow position:
Alignm length: 334
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 306, 20

Conread position: 186-515
Cow position:
Alignm length: 342
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 0

Conread position: 201-487
Cow position:
Alignm length: 301
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 6

Conread position: 218-507
Cow position:
Alignm length: 299
Alignm identity: 205
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 45, 37

Conread position: 224-515
Cow position:
Alignm length: 298
Alignm identity: 209
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 49, 277

Conread position: 244-487
Cow position:
Alignm length: 254
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 244-515
Cow position:
Alignm length: 278
Alignm identity: 204
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 128, 15

Conread position: 281-515
Cow position:
Alignm length: 243
Alignm identity: 179
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 91, 0

Conread position: 310-502
Cow position:
Alignm length: 195
Alignm identity: 147
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 68, 47

Conread position: 311-505
Cow position:
Alignm length: 195
Alignm identity: 144
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 178, 0

Conread position: 324-515
Cow position:
Alignm length: 200
Alignm identity: 151
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 48, 0

Conread position: 338-515
Cow position:
Alignm length: 185
Alignm identity: 137
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 26, 93

Conread position: 338-515
Cow position:
Alignm length: 185
Alignm identity: 141
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 34, 0

Conread position: 379-515
Cow position:
Alignm length: 139
Alignm identity: 105
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 109, 0

Show alignments to all cow chromosomes.