Cow genome map

Conread name: Ss1.1-rpigca0_007986.5

Conread position: 1-336
Cow position:
Alignm length: 338
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 282, 69

Conread position: 1-370
Cow position:
Alignm length: 374
Alignm identity: 258
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 15, 78

Conread position: 1-429
Cow position:
Alignm length: 434
Alignm identity: 275
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 125, 21

Conread position: 1-448
Cow position:
Alignm length: 458
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 282, 69

Conread position: 1-470
Cow position:
Alignm length: 493
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 262, 62

Conread position: 1-471
Cow position:
Alignm length: 483
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 70

Conread position: 1-477
Cow position:
Alignm length: 481
Alignm identity: 304
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 46, 38

Conread position: 1-477
Cow position:
Alignm length: 482
Alignm identity: 315
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 64, 31

Conread position: 1-485
Cow position:
Alignm length: 491
Alignm identity: 305
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 200, 61

Conread position: 1-506
Cow position:
Alignm length: 515
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 264, 71

Conread position: 1-515
Cow position:
Alignm length: 523
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 274, 77

Conread position: 1-515
Cow position:
Alignm length: 523
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 75

Conread position: 1-515
Cow position:
Alignm length: 528
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 69

Conread position: 1-515
Cow position:
Alignm length: 529
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 265, 69

Conread position: 1-515
Cow position:
Alignm length: 526
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 69

Conread position: 1-515
Cow position:
Alignm length: 530
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 268, 69

Conread position: 1-515
Cow position:
Alignm length: 522
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 371, 69

Conread position: 1-515
Cow position:
Alignm length: 525
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 360, 71

Conread position: 1-515
Cow position:
Alignm length: 527
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 69

Conread position: 1-515
Cow position:
Alignm length: 528
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 268, 69

Conread position: 1-515
Cow position:
Alignm length: 527
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 284, 69

Conread position: 1-515
Cow position:
Alignm length: 524
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 265, 69

Conread position: 1-515
Cow position:
Alignm length: 527
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 69

Conread position: 1-515
Cow position:
Alignm length: 527
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 69

Conread position: 1-515
Cow position:
Alignm length: 524
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 361, 69

Conread position: 1-515
Cow position:
Alignm length: 527
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 54

Conread position: 1-515
Cow position:
Alignm length: 525
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 69

Conread position: 1-515
Cow position:
Alignm length: 527
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 69

Conread position: 1-515
Cow position:
Alignm length: 524
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 370, 38

Conread position: 1-515
Cow position:
Alignm length: 526
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 69

Conread position: 1-515
Cow position:
Alignm length: 528
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 280, 69

Conread position: 1-516
Cow position:
Alignm length: 524
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 71

Conread position: 2-281
Cow position:
Alignm length: 280
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 0

Conread position: 2-486
Cow position:
Alignm length: 494
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 360, 68

Conread position: 2-502
Cow position:
Alignm length: 510
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 369, 68

Conread position: 2-506
Cow position:
Alignm length: 517
Alignm identity: 329
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 248, 11

Conread position: 2-513
Cow position:
Alignm length: 525
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 262, 68

Conread position: 2-515
Cow position:
Alignm length: 533
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 256, 68

Conread position: 2-515
Cow position:
Alignm length: 533
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 260, 68

Conread position: 2-515
Cow position:
Alignm length: 527
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 69

Conread position: 3-223
Cow position:
Alignm length: 221
Alignm identity: 160
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 67, 0

Conread position: 3-236
Cow position:
Alignm length: 244
Alignm identity: 174
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 61, 162

Conread position: 3-252
Cow position:
Alignm length: 250
Alignm identity: 174
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 73, 0

Conread position: 3-265
Cow position:
Alignm length: 263
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 0

Conread position: 3-267
Cow position:
Alignm length: 265
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 0

Conread position: 3-332
Cow position:
Alignm length: 333
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 265, 67

Conread position: 3-438
Cow position:
Alignm length: 437
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 36

Conread position: 3-479
Cow position:
Alignm length: 487
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 236, 68

Conread position: 3-486
Cow position:
Alignm length: 487
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 269, 50

Conread position: 3-486
Cow position:
Alignm length: 491
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 366, 67

Conread position: 3-486
Cow position:
Alignm length: 493
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 274, 67

Conread position: 3-486
Cow position:
Alignm length: 491
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 366, 67

Conread position: 3-486
Cow position:
Alignm length: 495
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 67

Conread position: 3-489
Cow position:
Alignm length: 494
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 359, 69

Conread position: 3-500
Cow position:
Alignm length: 506
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 262, 100

Conread position: 3-500
Cow position:
Alignm length: 514
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 68

Conread position: 3-505
Cow position:
Alignm length: 510
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 67

Conread position: 3-506
Cow position:
Alignm length: 515
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 276, 67

Conread position: 3-506
Cow position:
Alignm length: 519
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 69

Conread position: 3-513
Cow position:
Alignm length: 527
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 50

Conread position: 3-515
Cow position:
Alignm length: 525
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 265, 67

Conread position: 3-515
Cow position:
Alignm length: 524
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 67

Conread position: 3-515
Cow position:
Alignm length: 523
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 265, 67

Conread position: 3-515
Cow position:
Alignm length: 525
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 280, 67

Conread position: 3-515
Cow position:
Alignm length: 536
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 67

Conread position: 3-515
Cow position:
Alignm length: 519
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 274, 67

Conread position: 3-515
Cow position:
Alignm length: 527
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 268, 67

Conread position: 3-515
Cow position:
Alignm length: 526
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 67

Conread position: 3-515
Cow position:
Alignm length: 526
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 159

Conread position: 3-515
Cow position:
Alignm length: 526
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 268, 67

Conread position: 3-515
Cow position:
Alignm length: 523
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 73

Conread position: 3-516
Cow position:
Alignm length: 529
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 68

Conread position: 4-486
Cow position:
Alignm length: 494
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 65

Conread position: 4-506
Cow position:
Alignm length: 514
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 57

Conread position: 5-335
Cow position:
Alignm length: 335
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 68

Conread position: 5-371
Cow position:
Alignm length: 370
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 66

Conread position: 5-515
Cow position:
Alignm length: 522
Alignm identity: 333
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 121, 45

Conread position: 5-515
Cow position:
Alignm length: 523
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 65

Conread position: 5-515
Cow position:
Alignm length: 523
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 266, 65

Conread position: 6-477
Cow position:
Alignm length: 484
Alignm identity: 312
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 207, 70

Conread position: 7-515
Cow position:
Alignm length: 526
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 66

Conread position: 8-466
Cow position:
Alignm length: 471
Alignm identity: 296
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 123, 66

Conread position: 8-506
Cow position:
Alignm length: 499
Alignm identity: 322
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 54, 0

Conread position: 9-506
Cow position:
Alignm length: 504
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 46

Conread position: 11-506
Cow position:
Alignm length: 500
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 471, 59

Conread position: 27-507
Cow position:
Alignm length: 488
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 28

Conread position: 46-516
Cow position:
Alignm length: 483
Alignm identity: 316
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 116, 30

Conread position: 47-459
Cow position:
Alignm length: 425
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 23

Conread position: 55-454
Cow position:
Alignm length: 408
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 21

Conread position: 55-478
Cow position:
Alignm length: 431
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 309, 17

Conread position: 76-370
Cow position:
Alignm length: 302
Alignm identity: 210
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 203, 39

Conread position: 88-516
Cow position:
Alignm length: 435
Alignm identity: 291
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 186, 64

Conread position: 89-482
Cow position:
Alignm length: 404
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 65

Conread position: 93-470
Cow position:
Alignm length: 399
Alignm identity: 255
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 38, 223

Conread position: 94-515
Cow position:
Alignm length: 440
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 76

Conread position: 100-509
Cow position:
Alignm length: 418
Alignm identity: 262
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 58, 25

Conread position: 101-515
Cow position:
Alignm length: 428
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 25

Conread position: 106-449
Cow position:
Alignm length: 355
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 52

Conread position: 106-515
Cow position:
Alignm length: 418
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 52

Conread position: 134-515
Cow position:
Alignm length: 387
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 33

Conread position: 145-507
Cow position:
Alignm length: 372
Alignm identity: 247
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 9, 113

Conread position: 155-456
Cow position:
Alignm length: 310
Alignm identity: 186
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 127, 0

Conread position: 156-481
Cow position:
Alignm length: 332
Alignm identity: 227
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 119, 66

Conread position: 167-483
Cow position:
Alignm length: 318
Alignm identity: 203
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 51, 27

Conread position: 179-515
Cow position:
Alignm length: 339
Alignm identity: 228
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 7, 18

Conread position: 180-429
Cow position:
Alignm length: 262
Alignm identity: 177
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 91, 11

Conread position: 182-465
Cow position:
Alignm length: 297
Alignm identity: 208
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 70, 58

Conread position: 192-515
Cow position:
Alignm length: 336
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 0

Conread position: 203-486
Cow position:
Alignm length: 294
Alignm identity: 196
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 70, 0

Conread position: 206-377
Cow position:
Alignm length: 175
Alignm identity: 122
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 74, 149

Conread position: 219-465
Cow position:
Alignm length: 254
Alignm identity: 168
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 153, 0

Conread position: 223-486
Cow position:
Alignm length: 269
Alignm identity: 192
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 50, 0

Conread position: 225-515
Cow position:
Alignm length: 299
Alignm identity: 195
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 53, 214

Conread position: 225-515
Cow position:
Alignm length: 302
Alignm identity: 213
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 48, 270

Conread position: 235-513
Cow position:
Alignm length: 288
Alignm identity: 194
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 47, 0

Conread position: 240-478
Cow position:
Alignm length: 247
Alignm identity: 177
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 33, 0

Conread position: 247-486
Cow position:
Alignm length: 250
Alignm identity: 182
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 33, 109

Conread position: 318-515
Cow position:
Alignm length: 208
Alignm identity: 156
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 54, 0

Conread position: 336-487
Cow position:
Alignm length: 160
Alignm identity: 121
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 34, 152

Show alignments to all cow chromosomes.