Cow genome map
| Conread name: | Ss1.1-rpigcb_12875.5 |
| Conread position: | 251-548 |
| Cow position: | chr14:3155868-3156168 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 13, 230 |
| Conread position: | 263-541 |
| Cow position: | chr14:3101018-3100743 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 47, 56 |
| Conread position: | 264-548 |
| Cow position: | chr14:3080692-3080408 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 273-551 |
| Cow position: | chr14:25895781-25896059 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 56, 63 |
| Conread position: | 273-552 |
| Cow position: | chr14:25859347-25859626 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 275-543 |
| Cow position: | chr14:3155407-3155674 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 189 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 275-548 |
| Cow position: | chr14:3155491-3155763 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 209, 5 |
| Conread position: | 275-548 |
| Cow position: | chr14:3155980-3156252 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 32, 5 |
| Conread position: | 275-551 |
| Cow position: | chr14:25836633-25836908 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 210, 5 |
| Conread position: | 275-552 |
| Cow position: | chr14:3080932-3080656 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 57, 6 |
| Conread position: | 275-552 |
| Cow position: | chr14:25859686-25859962 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 141, 5 |
| Conread position: | 276-548 |
| Cow position: | chr14:680641-680913 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 110, 95 |
| Conread position: | 276-551 |
| Cow position: | chr14:25895112-25895387 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 53, 59 |
| Conread position: | 277-552 |
| Cow position: | chr14:3101420-3101146 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 40, 36 |
| Conread position: | 279-542 |
| Cow position: | chr14:3080761-3080498 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 105, 92 |
| Conread position: | 279-548 |
| Cow position: | chr14:25896039-25896308 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 50, 56 |
| Conread position: | 279-551 |
| Cow position: | chr14:25836804-25837076 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 280-528 |
| Cow position: | chr14:3156236-3156484 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 204, 198 |
| Conread position: | 280-533 |
| Cow position: | chr14:25836973-25837226 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 205, 198 |
| Conread position: | 280-533 |
| Cow position: | chr14:25860530-25860783 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 280-542 |
| Cow position: | chr14:447591-447853 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 148, 144 |
| Conread position: | 280-542 |
| Cow position: | chr14:447675-447937 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 49, 55 |
| Conread position: | 280-542 |
| Cow position: | chr14:680897-681159 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 204, 198 |
| Conread position: | 280-542 |
| Cow position: | chr14:3080172-3079910 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 280-543 |
| Cow position: | chr14:447759-448022 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 106, 88 |
| Conread position: | 280-543 |
| Cow position: | chr14:3156152-3156415 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 204, 198 |
| Conread position: | 280-543 |
| Cow position: | chr14:25783598-25783861 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 204, 198 |
| Conread position: | 280-543 |
| Cow position: | chr14:25794676-25794413 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 136, 128 |
| Conread position: | 280-543 |
| Cow position: | chr14:25859606-25859869 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 220, 231 |
| Conread position: | 280-548 |
| Cow position: | chr14:680309-680577 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 100, 87 |
| Conread position: | 280-548 |
| Cow position: | chr14:680813-681081 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 51, 56 |
| Conread position: | 280-548 |
| Cow position: | chr14:3080088-3079820 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 196 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 152, 158 |
| Conread position: | 280-548 |
| Cow position: | chr14:3080340-3080072 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 280-548 |
| Cow position: | chr14:3080424-3080156 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 212, 198 |
| Conread position: | 280-548 |
| Cow position: | chr14:3080508-3080240 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 212, 199 |
| Conread position: | 280-548 |
| Cow position: | chr14:3127768-3127500 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 280-549 |
| Cow position: | chr14:3080256-3079987 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 280-549 |
| Cow position: | chr14:3080844-3080575 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 214, 198 |
| Conread position: | 280-549 |
| Cow position: | chr14:25783766-25784035 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 280-549 |
| Cow position: | chr14:25784018-25784287 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 158, 150 |
| Conread position: | 280-549 |
| Cow position: | chr14:25784102-25784371 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 204, 198 |
| Conread position: | 280-549 |
| Cow position: | chr14:25784186-25784455 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 120, 131 |
| Conread position: | 280-549 |
| Cow position: | chr14:25784270-25784539 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 204, 198 |
| Conread position: | 280-549 |
| Cow position: | chr14:25784354-25784623 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 158, 151 |
| Conread position: | 280-549 |
| Cow position: | chr14:25794508-25794238 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 179, 0 |
| Conread position: | 280-549 |
| Cow position: | chr14:25794928-25794659 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 55, 50 |
| Conread position: | 280-550 |
| Cow position: | chr14:447927-448197 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 229, 219 |
| Conread position: | 280-550 |
| Cow position: | chr14:3080592-3080322 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 64, 52 |
| Conread position: | 280-550 |
| Cow position: | chr14:3127684-3127414 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 212, 198 |
| Conread position: | 280-550 |
| Cow position: | chr14:25836385-25836655 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 208, 198 |
| Conread position: | 280-550 |
| Cow position: | chr14:25836553-25836823 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 204, 198 |
| Conread position: | 280-551 |
| Cow position: | chr14:3101166-3100898 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 204, 104 |
| Conread position: | 280-551 |
| Cow position: | chr14:25836049-25836320 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 280-551 |
| Cow position: | chr14:25836469-25836740 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 74, 55 |
| Conread position: | 280-551 |
| Cow position: | chr14:25859270-25859541 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 152, 158 |
| Conread position: | 280-551 |
| Cow position: | chr14:25859522-25859793 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 109, 104 |
| Conread position: | 280-551 |
| Cow position: | chr14:25859942-25860213 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 175 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 64, 48 |
| Conread position: | 280-551 |
| Cow position: | chr14:25860026-25860297 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 28, 41 |
| Conread position: | 280-551 |
| Cow position: | chr14:25860110-25860381 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 280-551 |
| Cow position: | chr14:25860194-25860465 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 280-551 |
| Cow position: | chr14:25876573-25876844 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 140, 147 |
| Conread position: | 280-551 |
| Cow position: | chr14:25876825-25877096 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 140, 148 |
| Conread position: | 280-551 |
| Cow position: | chr14:25876993-25877264 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 280-551 |
| Cow position: | chr14:25877077-25877348 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 205, 198 |
| Conread position: | 280-551 |
| Cow position: | chr14:25877161-25877432 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 280-551 |
| Cow position: | chr14:25877245-25877516 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 180 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 280-551 |
| Cow position: | chr14:25910917-25911188 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 109, 104 |
| Conread position: | 280-552 |
| Cow position: | chr14:3127852-3127580 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 194 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 212, 197 |
| Conread position: | 280-552 |
| Cow position: | chr14:3127936-3127664 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 280-552 |
| Cow position: | chr14:25836217-25836489 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 73, 51 |
| Conread position: | 280-552 |
| Cow position: | chr14:25836721-25836993 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 205, 198 |
| Conread position: | 280-552 |
| Cow position: | chr14:25877581-25877853 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 142, 147 |
| Conread position: | 281-549 |
| Cow position: | chr14:25783851-25784119 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 119, 130 |
| Conread position: | 281-549 |
| Cow position: | chr14:25783935-25784203 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 207, 197 |
| Conread position: | 281-551 |
| Cow position: | chr14:3101333-3101063 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 147, 118 |
| Conread position: | 281-551 |
| Cow position: | chr14:25859187-25859457 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 50, 55 |
| Conread position: | 282-541 |
| Cow position: | chr14:25794422-25794162 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 93, 197 |
| Conread position: | 282-542 |
| Cow position: | chr14:3080002-3079742 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 282-549 |
| Cow position: | chr14:25783684-25783951 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 282-549 |
| Cow position: | chr14:25795094-25794827 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 58, 47 |
| Conread position: | 301-548 |
| Cow position: | chr14:447864-448111 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 193, 177 |
| Conread position: | 333-542 |
| Cow position: | chr14:420616-420823 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 161, 18 |
| Conread position: | 359-551 |
| Cow position: | chr14:3155406-3155598 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 126, 119 |
Show alignments to all cow chromosomes.