Cow genome map
| Conread name: | Ss1.1-rpigcb_12875.5 |
| Conread position: | 264-549 |
| Cow position: | chr22:11640675-11640960 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 271-551 |
| Cow position: | chr22:12419303-12419024 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 213, 10 |
| Conread position: | 274-549 |
| Cow position: | chr22:11701265-11701539 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 175 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 220, 16 |
| Conread position: | 275-534 |
| Cow position: | chr22:12399007-12398749 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 33, 5 |
| Conread position: | 275-543 |
| Cow position: | chr22:12498951-12499218 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 53, 5 |
| Conread position: | 275-548 |
| Cow position: | chr22:12399343-12399071 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 197 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 35, 5 |
| Conread position: | 275-548 |
| Cow position: | chr22:12431575-12431303 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 42, 5 |
| Conread position: | 275-548 |
| Cow position: | chr22:12475720-12475448 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 275-548 |
| Cow position: | chr22:12476308-12476036 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 53, 5 |
| Conread position: | 275-549 |
| Cow position: | chr22:12385333-12385060 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 184 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 213, 5 |
| Conread position: | 275-549 |
| Cow position: | chr22:12399259-12398986 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 191 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 275-549 |
| Cow position: | chr22:12399595-12399322 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 138, 5 |
| Conread position: | 275-549 |
| Cow position: | chr22:12499539-12499812 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 275-549 |
| Cow position: | chr22:14429895-14430168 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 165, 5 |
| Conread position: | 275-550 |
| Cow position: | chr22:12399091-12398817 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 189 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 165, 5 |
| Conread position: | 275-552 |
| Cow position: | chr22:12399679-12399403 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 110, 5 |
| Conread position: | 275-552 |
| Cow position: | chr22:12430903-12430627 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 33, 5 |
| Conread position: | 275-552 |
| Cow position: | chr22:12430987-12430711 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 33, 15 |
| Conread position: | 276-537 |
| Cow position: | chr22:12432078-12431818 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 219, 10 |
| Conread position: | 276-552 |
| Cow position: | chr22:12476391-12476116 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 276-552 |
| Cow position: | chr22:12498868-12499143 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 279-548 |
| Cow position: | chr22:12458104-12457835 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 30, 56 |
| Conread position: | 279-549 |
| Cow position: | chr22:12432328-12432058 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 280-533 |
| Cow position: | chr22:12418942-12418689 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 211, 198 |
| Conread position: | 280-535 |
| Cow position: | chr22:12458019-12457762 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 30, 54 |
| Conread position: | 280-539 |
| Cow position: | chr22:11641195-11641455 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 59, 51 |
| Conread position: | 280-540 |
| Cow position: | chr22:11701438-11701701 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 27, 35 |
| Conread position: | 280-541 |
| Cow position: | chr22:12475548-12475287 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 188 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 211, 198 |
| Conread position: | 280-541 |
| Cow position: | chr22:12499711-12499972 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 113, 125 |
| Conread position: | 280-542 |
| Cow position: | chr22:12399423-12399161 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 43, 55 |
| Conread position: | 280-548 |
| Cow position: | chr22:11641027-11641295 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 214, 198 |
| Conread position: | 280-548 |
| Cow position: | chr22:12475884-12475616 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 280-548 |
| Cow position: | chr22:12499375-12499643 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 103, 107 |
| Conread position: | 280-549 |
| Cow position: | chr22:11640943-11641212 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 36, 48 |
| Conread position: | 280-549 |
| Cow position: | chr22:11666532-11666801 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 41, 46 |
| Conread position: | 280-549 |
| Cow position: | chr22:11701354-11701623 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 212, 198 |
| Conread position: | 280-549 |
| Cow position: | chr22:12399507-12399238 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 193 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 127, 134 |
| Conread position: | 280-549 |
| Cow position: | chr22:12431151-12430882 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 37, 33 |
| Conread position: | 280-549 |
| Cow position: | chr22:12431739-12431470 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 280-549 |
| Cow position: | chr22:12432159-12431890 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 280-549 |
| Cow position: | chr22:12475632-12475363 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 212, 197 |
| Conread position: | 280-549 |
| Cow position: | chr22:12499627-12499896 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 204, 196 |
| Conread position: | 280-550 |
| Cow position: | chr22:12418774-12418504 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 106, 85 |
| Conread position: | 280-551 |
| Cow position: | chr22:12431067-12430796 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 191 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 119, 130 |
| Conread position: | 280-551 |
| Cow position: | chr22:12431655-12431384 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 120, 135 |
| Conread position: | 280-551 |
| Cow position: | chr22:12499039-12499310 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 280-552 |
| Cow position: | chr22:12385499-12385225 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 30, 50 |
| Conread position: | 280-552 |
| Cow position: | chr22:12385583-12385309 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 113, 134 |
| Conread position: | 280-552 |
| Cow position: | chr22:12431235-12430963 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 205, 198 |
| Conread position: | 280-552 |
| Cow position: | chr22:12431319-12431047 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 36, 32 |
| Conread position: | 280-552 |
| Cow position: | chr22:12431403-12431131 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 280-552 |
| Cow position: | chr22:12431487-12431215 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 184 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 214, 199 |
| Conread position: | 280-552 |
| Cow position: | chr22:12431907-12431635 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 125, 134 |
| Conread position: | 280-552 |
| Cow position: | chr22:12432243-12431971 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 75, 69 |
| Conread position: | 280-552 |
| Cow position: | chr22:12432411-12432139 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 213, 199 |
| Conread position: | 280-552 |
| Cow position: | chr22:12458271-12457999 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 30, 40 |
| Conread position: | 280-552 |
| Cow position: | chr22:12458355-12458083 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 30, 40 |
| Conread position: | 280-552 |
| Cow position: | chr22:12475800-12475528 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 280-552 |
| Cow position: | chr22:12476136-12475864 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 158, 152 |
| Conread position: | 280-552 |
| Cow position: | chr22:12476220-12475948 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 280-552 |
| Cow position: | chr22:12499123-12499395 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 158, 152 |
| Conread position: | 281-549 |
| Cow position: | chr22:12431822-12431554 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 207, 197 |
| Conread position: | 281-549 |
| Cow position: | chr22:12432494-12432226 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 210, 197 |
| Conread position: | 281-552 |
| Cow position: | chr22:12475967-12475696 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 210, 197 |
| Conread position: | 281-552 |
| Cow position: | chr22:12499292-12499563 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 210, 197 |
| Conread position: | 282-549 |
| Cow position: | chr22:12458437-12458170 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 156, 150 |
| Conread position: | 283-543 |
| Cow position: | chr22:12385410-12385150 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 27, 39 |
| Conread position: | 283-552 |
| Cow position: | chr22:12499462-12499731 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 286-549 |
| Cow position: | chr22:11666622-11666885 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 198, 192 |
| Conread position: | 286-549 |
| Cow position: | chr22:12399165-12398902 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 198, 192 |
| Conread position: | 286-552 |
| Cow position: | chr22:12399837-12399571 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 212, 192 |
| Conread position: | 288-552 |
| Cow position: | chr22:12458179-12457915 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 118, 131 |
| Conread position: | 289-548 |
| Cow position: | chr22:12419017-12418758 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 209, 190 |
| Conread position: | 292-543 |
| Cow position: | chr22:12419367-12419116 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 41, 53 |
| Conread position: | 292-552 |
| Cow position: | chr22:12432567-12432307 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 31, 37 |
| Conread position: | 295-549 |
| Cow position: | chr22:12458592-12458338 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 15, 25 |
| Conread position: | 327-548 |
| Cow position: | chr22:12476425-12476204 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 327-548 |
| Cow position: | chr22:12498834-12499055 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 351-549 |
| Cow position: | chr22:14429802-14430000 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 36, 32 |
| Conread position: | 367-548 |
| Cow position: | chr22:12419023-12418842 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.