Cow genome map
| Conread name: | Ss1.1-rpigcb_12875.5 |
| Conread position: | 195-548 |
| Cow position: | chr23:25724132-25723774 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 16, 46 |
| Conread position: | 240-548 |
| Cow position: | chr23:25698693-25698387 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 36, 19 |
| Conread position: | 273-524 |
| Cow position: | chr23:25698577-25698327 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 44, 7 |
| Conread position: | 275-480 |
| Cow position: | chr23:24522403-24522199 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 41, 5 |
| Conread position: | 275-529 |
| Cow position: | chr23:25660484-25660737 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 213, 5 |
| Conread position: | 275-542 |
| Cow position: | chr23:24654114-24654380 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 275-548 |
| Cow position: | chr23:24639717-24639989 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 195 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 217, 5 |
| Conread position: | 275-548 |
| Cow position: | chr23:25660316-25660588 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 78, 5 |
| Conread position: | 275-550 |
| Cow position: | chr23:24547081-24546807 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 35, 5 |
| Conread position: | 275-551 |
| Cow position: | chr23:25626612-25626887 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 34, 5 |
| Conread position: | 275-552 |
| Cow position: | chr23:24535964-24535688 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 275-552 |
| Cow position: | chr23:24547249-24546973 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 275-552 |
| Cow position: | chr23:24639297-24639573 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 85, 5 |
| Conread position: | 275-552 |
| Cow position: | chr23:24639465-24639741 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 191 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 35, 5 |
| Conread position: | 275-552 |
| Cow position: | chr23:25626780-25627057 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 259, 5 |
| Conread position: | 277-552 |
| Cow position: | chr23:24639550-24639825 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 199 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 33, 47 |
| Conread position: | 278-552 |
| Cow position: | chr23:24626151-24626413 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 210, 87 |
| Conread position: | 279-549 |
| Cow position: | chr23:24626308-24626578 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 205, 199 |
| Conread position: | 280-524 |
| Cow position: | chr23:25723958-25723714 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 280-536 |
| Cow position: | chr23:24560385-24560129 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 187 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 205, 198 |
| Conread position: | 280-536 |
| Cow position: | chr23:24626477-24626733 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 37, 32 |
| Conread position: | 280-541 |
| Cow position: | chr23:24639805-24640066 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 186 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 208, 199 |
| Conread position: | 280-542 |
| Cow position: | chr23:24560637-24560375 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 198 |
| Conread position: | 280-548 |
| Cow position: | chr23:24546909-24546641 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 204, 198 |
| Conread position: | 280-548 |
| Cow position: | chr23:25626199-25626467 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 30, 43 |
| Conread position: | 280-549 |
| Cow position: | chr23:24547161-24546892 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 28, 36 |
| Conread position: | 280-549 |
| Cow position: | chr23:24560553-24560284 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 192 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 211, 198 |
| Conread position: | 280-549 |
| Cow position: | chr23:25626283-25626552 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 30, 40 |
| Conread position: | 280-550 |
| Cow position: | chr23:24522567-24522297 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 280-552 |
| Cow position: | chr23:24522483-24522211 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 280-552 |
| Cow position: | chr23:24546993-24546721 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 280-552 |
| Cow position: | chr23:24560469-24560197 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 208, 198 |
| Conread position: | 280-552 |
| Cow position: | chr23:24560805-24560533 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 211, 198 |
| Conread position: | 280-552 |
| Cow position: | chr23:24639217-24639489 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 205, 196 |
| Conread position: | 280-552 |
| Cow position: | chr23:24639637-24639909 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 192 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 208, 199 |
| Conread position: | 280-552 |
| Cow position: | chr23:25626031-25626303 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 36, 29 |
| Conread position: | 280-552 |
| Cow position: | chr23:25626367-25626636 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 74, 69 |
| Conread position: | 280-552 |
| Cow position: | chr23:25660236-25660508 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 280-552 |
| Cow position: | chr23:25660404-25660676 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 281-524 |
| Cow position: | chr23:25698316-25698075 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 112, 8 |
| Conread position: | 281-549 |
| Cow position: | chr23:24522647-24522382 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 283-552 |
| Cow position: | chr23:25626454-25626720 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 26, 41 |
| Conread position: | 289-548 |
| Cow position: | chr23:25626544-25626800 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 199, 42 |
| Conread position: | 289-549 |
| Cow position: | chr23:24535867-24535607 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 21, 31 |
| Conread position: | 289-552 |
| Cow position: | chr23:24547320-24547057 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 187 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 204, 189 |
| Conread position: | 289-552 |
| Cow position: | chr23:24654043-24654306 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 57 |
| Conread position: | 290-548 |
| Cow position: | chr23:24560879-24560621 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 291-552 |
| Cow position: | chr23:25625958-25626219 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 292-549 |
| Cow position: | chr23:24536032-24535775 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 146, 139 |
| Conread position: | 295-552 |
| Cow position: | chr23:24560706-24560449 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 196, 183 |
| Conread position: | 300-552 |
| Cow position: | chr23:25724106-25723854 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 320-549 |
| Cow position: | chr23:25698699-25698470 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 91, 83 |
| Conread position: | 323-548 |
| Cow position: | chr23:24626268-24626493 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 24, 36 |
| Conread position: | 358-549 |
| Cow position: | chr23:25660146-25660337 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 363-549 |
| Cow position: | chr23:24654032-24654219 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 7, 0 |
Show alignments to all cow chromosomes.