Cow genome map
| Conread name: | Ss1.1-rpigcb_12875.5 |
| Conread position: | 250-548 |
| Cow position: | chr24:17036576-17036278 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 209 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 241, 228 |
| Conread position: | 275-543 |
| Cow position: | chr24:17035626-17035359 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 216, 5 |
| Conread position: | 275-544 |
| Cow position: | chr24:17035878-17035610 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 55, 5 |
| Conread position: | 275-548 |
| Cow position: | chr24:17070707-17070979 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 195 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 41, 5 |
| Conread position: | 275-549 |
| Cow position: | chr24:17036046-17035773 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 196 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 220, 5 |
| Conread position: | 275-549 |
| Cow position: | chr24:17070539-17070812 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 33, 5 |
| Conread position: | 275-550 |
| Cow position: | chr24:17035458-17035184 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 197 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 41, 5 |
| Conread position: | 275-552 |
| Cow position: | chr24:17035374-17035098 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 193 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 275-552 |
| Cow position: | chr24:17035542-17035266 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 275-552 |
| Cow position: | chr24:17035962-17035686 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 200 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 136, 5 |
| Conread position: | 275-552 |
| Cow position: | chr24:17036214-17035938 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 280-540 |
| Cow position: | chr24:17035286-17035026 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 187 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 218, 199 |
| Conread position: | 280-542 |
| Cow position: | chr24:17035790-17035528 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 27, 40 |
| Conread position: | 280-542 |
| Cow position: | chr24:17077841-17077579 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 148, 144 |
| Conread position: | 280-543 |
| Cow position: | chr24:17036462-17036199 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 192 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 74, 69 |
| Conread position: | 280-549 |
| Cow position: | chr24:17013248-17013516 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 181 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 258, 0 |
| Conread position: | 280-549 |
| Cow position: | chr24:17077925-17077656 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 232, 228 |
| Conread position: | 280-549 |
| Cow position: | chr24:17078093-17077824 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 195 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 232, 227 |
| Conread position: | 280-552 |
| Cow position: | chr24:17035706-17035434 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 193 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 280-552 |
| Cow position: | chr24:17036126-17035854 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 198 |
| Conread position: | 280-552 |
| Cow position: | chr24:17036294-17036022 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 197 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 126, 103 |
| Conread position: | 280-552 |
| Cow position: | chr24:17036378-17036106 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 196 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 204, 187 |
| Conread position: | 280-552 |
| Cow position: | chr24:17078009-17077737 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 148, 144 |
| Conread position: | 281-548 |
| Cow position: | chr24:17013165-17013432 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 283-550 |
| Cow position: | chr24:17070462-17070729 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 27, 38 |
| Conread position: | 289-532 |
| Cow position: | chr24:17070804-17071047 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 292-505 |
| Cow position: | chr24:16986442-16986655 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 25, 21 |
| Conread position: | 292-552 |
| Cow position: | chr24:17036615-17036358 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 347-549 |
| Cow position: | chr24:17013149-17013349 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 146, 5 |
| Conread position: | 374-536 |
| Cow position: | chr24:16986661-16986822 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 15, 10 |
Show alignments to all cow chromosomes.