Cow genome map
| Conread name: | Ss1.1-rpigcb_12875.5 |
| Conread position: | 252-542 |
| Cow position: | chr25:34763134-34763424 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 181 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 258-550 |
| Cow position: | chr25:326477-326767 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 265-549 |
| Cow position: | chr25:33145002-33145283 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 273-524 |
| Cow position: | chr25:36801704-36801955 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 44, 40 |
| Conread position: | 273-549 |
| Cow position: | chr25:36801369-36801644 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 116, 7 |
| Conread position: | 274-538 |
| Cow position: | chr25:36800793-36801057 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 53, 61 |
| Conread position: | 274-549 |
| Cow position: | chr25:33298557-33298832 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 274-549 |
| Cow position: | chr25:34732110-34731835 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 36, 50 |
| Conread position: | 275-486 |
| Cow position: | chr25:34769456-34769247 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 81, 5 |
| Conread position: | 275-498 |
| Cow position: | chr25:34447522-34447742 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 275-535 |
| Cow position: | chr25:23420547-23420808 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 33, 5 |
| Conread position: | 275-541 |
| Cow position: | chr25:33305239-33304977 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 198, 5 |
| Conread position: | 275-549 |
| Cow position: | chr25:33127798-33128071 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 5 |
| Conread position: | 275-549 |
| Cow position: | chr25:33157141-33156868 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 275-549 |
| Cow position: | chr25:33157478-33157204 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 219, 203 |
| Conread position: | 275-549 |
| Cow position: | chr25:34769708-34769435 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 275-549 |
| Cow position: | chr25:34769876-34769603 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 210, 5 |
| Conread position: | 275-549 |
| Cow position: | chr25:34769960-34769687 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 195 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 217, 5 |
| Conread position: | 275-551 |
| Cow position: | chr25:34714198-34714473 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 34, 5 |
| Conread position: | 275-552 |
| Cow position: | chr25:33157057-33156782 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 5 |
| Conread position: | 275-552 |
| Cow position: | chr25:34769792-34769516 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 217, 5 |
| Conread position: | 276-542 |
| Cow position: | chr25:346528-346794 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 145, 152 |
| Conread position: | 276-548 |
| Cow position: | chr25:25652352-25652624 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 218, 202 |
| Conread position: | 276-548 |
| Cow position: | chr25:25652604-25652876 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 50, 59 |
| Conread position: | 277-525 |
| Cow position: | chr25:366806-367054 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 144, 151 |
| Conread position: | 277-543 |
| Cow position: | chr25:34762826-34763092 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 277-548 |
| Cow position: | chr25:34447103-34447374 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 109, 92 |
| Conread position: | 277-549 |
| Cow position: | chr25:33145095-33145367 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 46, 54 |
| Conread position: | 277-549 |
| Cow position: | chr25:34446935-34447207 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 207, 201 |
| Conread position: | 279-479 |
| Cow position: | chr25:34763245-34763445 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 279-548 |
| Cow position: | chr25:25652187-25652456 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 279-548 |
| Cow position: | chr25:33298982-33299251 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 161, 153 |
| Conread position: | 280-467 |
| Cow position: | chr25:34433020-34433207 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 280-527 |
| Cow position: | chr25:34714118-34714365 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 280-533 |
| Cow position: | chr25:33127970-33128223 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 280-533 |
| Cow position: | chr25:33145182-33145435 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 214, 198 |
| Conread position: | 280-536 |
| Cow position: | chr25:327007-327263 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 63, 53 |
| Conread position: | 280-536 |
| Cow position: | chr25:34447358-34447614 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 148, 137 |
| Conread position: | 280-540 |
| Cow position: | chr25:36801051-36801311 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 133, 128 |
| Conread position: | 280-542 |
| Cow position: | chr25:22235997-22236259 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 208, 196 |
| Conread position: | 280-542 |
| Cow position: | chr25:33157389-33157127 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 280-542 |
| Cow position: | chr25:33298647-33298909 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 280-543 |
| Cow position: | chr25:34769536-34769273 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 188 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 205, 197 |
| Conread position: | 280-548 |
| Cow position: | chr25:22235829-22236097 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 138, 148 |
| Conread position: | 280-548 |
| Cow position: | chr25:33127886-33128154 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 193 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 214, 199 |
| Conread position: | 280-548 |
| Cow position: | chr25:33298731-33298999 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 280-548 |
| Cow position: | chr25:33298815-33299083 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 29, 41 |
| Conread position: | 280-548 |
| Cow position: | chr25:34447274-34447542 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 213, 198 |
| Conread position: | 280-548 |
| Cow position: | chr25:34713950-34714218 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 280-548 |
| Cow position: | chr25:34769620-34769352 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 212, 197 |
| Conread position: | 280-548 |
| Cow position: | chr25:36800883-36801151 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 280-549 |
| Cow position: | chr25:23420383-23420652 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 280-549 |
| Cow position: | chr25:33157221-33156952 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 195 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 212, 198 |
| Conread position: | 280-549 |
| Cow position: | chr25:33157305-33157036 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 214, 198 |
| Conread position: | 280-549 |
| Cow position: | chr25:33299151-33299420 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 160, 152 |
| Conread position: | 280-549 |
| Cow position: | chr25:34447022-34447291 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 28, 40 |
| Conread position: | 280-549 |
| Cow position: | chr25:34770040-34769771 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 198 |
| Conread position: | 280-549 |
| Cow position: | chr25:36800715-36800984 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 76, 71 |
| Conread position: | 280-552 |
| Cow position: | chr25:346448-346720 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 186, 192 |
| Conread position: | 280-552 |
| Cow position: | chr25:366725-366997 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 107, 103 |
| Conread position: | 280-552 |
| Cow position: | chr25:18642171-18641896 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 102, 152 |
| Conread position: | 280-552 |
| Cow position: | chr25:23420467-23420739 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 204, 198 |
| Conread position: | 280-552 |
| Cow position: | chr25:33305319-33305051 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 196, 0 |
| Conread position: | 280-552 |
| Cow position: | chr25:34433524-34433793 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 29, 39 |
| Conread position: | 280-552 |
| Cow position: | chr25:34732608-34732336 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 204, 198 |
| Conread position: | 280-552 |
| Cow position: | chr25:36801627-36801899 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 103, 107 |
| Conread position: | 283-506 |
| Cow position: | chr25:34714037-34714260 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 104, 78 |
| Conread position: | 283-548 |
| Cow position: | chr25:34770121-34769856 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 208, 195 |
| Conread position: | 300-552 |
| Cow position: | chr25:23420319-23420571 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 191, 178 |
| Conread position: | 313-549 |
| Cow position: | chr25:33127667-33127903 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 35, 21 |
| Conread position: | 316-552 |
| Cow position: | chr25:34446890-34447126 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 16, 20 |
| Conread position: | 320-548 |
| Cow position: | chr25:33157515-33157289 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 172, 22 |
| Conread position: | 328-548 |
| Cow position: | chr25:326460-326681 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 23, 13 |
| Conread position: | 339-549 |
| Cow position: | chr25:33305425-33305218 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 84, 21 |
| Conread position: | 343-542 |
| Cow position: | chr25:34732629-34732430 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 365-551 |
| Cow position: | chr25:34433021-34433207 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.