Cow genome map
| Conread name: | Ss1.1-rpigcb_12875.5 |
| Conread position: | 257-547 |
| Cow position: | chr7:1014331-1014624 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 7, 95 |
| Conread position: | 264-549 |
| Cow position: | chr7:11601203-11600918 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 8, 17 |
| Conread position: | 275-543 |
| Cow position: | chr7:3180029-3180296 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 117, 5 |
| Conread position: | 275-548 |
| Cow position: | chr7:42878860-42878588 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 139, 5 |
| Conread position: | 275-549 |
| Cow position: | chr7:1014935-1015208 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 275-549 |
| Cow position: | chr7:3179861-3180134 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 275-549 |
| Cow position: | chr7:3180197-3180470 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 219, 5 |
| Conread position: | 275-549 |
| Cow position: | chr7:3180365-3180638 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 194 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 213, 5 |
| Conread position: | 275-549 |
| Cow position: | chr7:3180449-3180722 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 194 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 210, 5 |
| Conread position: | 275-549 |
| Cow position: | chr7:42878944-42878671 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 81, 5 |
| Conread position: | 275-550 |
| Cow position: | chr7:42879028-42878754 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 165, 5 |
| Conread position: | 275-552 |
| Cow position: | chr7:1014851-1015127 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 119, 5 |
| Conread position: | 275-552 |
| Cow position: | chr7:1015103-1015379 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 275-552 |
| Cow position: | chr7:3179777-3180053 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 199 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 33, 5 |
| Conread position: | 275-552 |
| Cow position: | chr7:3179945-3180221 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 209, 5 |
| Conread position: | 275-552 |
| Cow position: | chr7:3180113-3180389 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 35, 5 |
| Conread position: | 275-552 |
| Cow position: | chr7:18390326-18390602 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 165, 5 |
| Conread position: | 277-552 |
| Cow position: | chr7:1439888-1440162 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 108, 83 |
| Conread position: | 279-543 |
| Cow position: | chr7:18390497-18390761 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 205, 199 |
| Conread position: | 280-526 |
| Cow position: | chr7:42878520-42878274 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 208, 198 |
| Conread position: | 280-536 |
| Cow position: | chr7:3180537-3180793 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 188 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 208, 198 |
| Conread position: | 280-539 |
| Cow position: | chr7:42878772-42878513 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 50, 42 |
| Conread position: | 280-548 |
| Cow position: | chr7:1014771-1015039 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 36, 29 |
| Conread position: | 280-548 |
| Cow position: | chr7:8277764-8278032 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 113, 143 |
| Conread position: | 280-549 |
| Cow position: | chr7:18390414-18390683 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 280-549 |
| Cow position: | chr7:42879108-42878839 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 280-549 |
| Cow position: | chr7:42879276-42879007 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 29, 42 |
| Conread position: | 280-550 |
| Cow position: | chr7:42878688-42878418 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 208, 198 |
| Conread position: | 280-551 |
| Cow position: | chr7:18390162-18390433 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 37, 33 |
| Conread position: | 280-552 |
| Cow position: | chr7:3180285-3180557 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 30, 40 |
| Conread position: | 280-552 |
| Cow position: | chr7:11600767-11600495 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 130, 126 |
| Conread position: | 280-552 |
| Cow position: | chr7:18390246-18390518 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 37, 32 |
| Conread position: | 281-552 |
| Cow position: | chr7:1014688-1014959 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 35, 45 |
| Conread position: | 283-549 |
| Cow position: | chr7:42879189-42878923 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 283-552 |
| Cow position: | chr7:3179700-3179969 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 215, 196 |
| Conread position: | 290-549 |
| Cow position: | chr7:1014283-1014542 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 194, 188 |
| Conread position: | 309-543 |
| Cow position: | chr7:1014218-1014452 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 74, 80 |
| Conread position: | 328-542 |
| Cow position: | chr7:3179661-3179875 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 61, 56 |
| Conread position: | 343-552 |
| Cow position: | chr7:11600872-11600663 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.