Cow genome map
| Conread name: | Ss1.1-rpigcb_12875.5 |
| Conread position: | 264-552 |
| Cow position: | chr8:48407646-48407358 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 206 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 62, 56 |
| Conread position: | 275-542 |
| Cow position: | chr8:6958000-6957735 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 33, 5 |
| Conread position: | 275-548 |
| Cow position: | chr8:46816209-46816481 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 104, 5 |
| Conread position: | 275-548 |
| Cow position: | chr8:46816461-46816733 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 209, 5 |
| Conread position: | 275-549 |
| Cow position: | chr8:46816713-46816986 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 243, 5 |
| Conread position: | 275-549 |
| Cow position: | chr8:46816965-46817238 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 35, 5 |
| Conread position: | 275-549 |
| Cow position: | chr8:55581154-55581427 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 275-549 |
| Cow position: | chr8:55581322-55581595 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 118, 5 |
| Conread position: | 275-550 |
| Cow position: | chr8:48407382-48407108 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 219, 5 |
| Conread position: | 275-550 |
| Cow position: | chr8:55580986-55581260 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 79, 5 |
| Conread position: | 279-548 |
| Cow position: | chr8:46816884-46817153 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 280-525 |
| Cow position: | chr8:48406538-48406293 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 214, 220 |
| Conread position: | 280-531 |
| Cow position: | chr8:55581410-55581661 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 30, 49 |
| Conread position: | 280-535 |
| Cow position: | chr8:45201690-45201944 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 252, 0 |
| Conread position: | 280-543 |
| Cow position: | chr8:46816129-46816392 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 28, 40 |
| Conread position: | 280-543 |
| Cow position: | chr8:46816381-46816644 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 159, 152 |
| Conread position: | 280-543 |
| Cow position: | chr8:46816801-46817064 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 204, 198 |
| Conread position: | 280-543 |
| Cow position: | chr8:46817053-46817316 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 213, 199 |
| Conread position: | 280-543 |
| Cow position: | chr8:48407042-48406779 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 199 |
| Conread position: | 280-544 |
| Cow position: | chr8:48406790-48406526 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 280-548 |
| Cow position: | chr8:46816297-46816565 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 212, 198 |
| Conread position: | 280-548 |
| Cow position: | chr8:48407210-48406942 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 112, 130 |
| Conread position: | 280-549 |
| Cow position: | chr8:48406874-48406605 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 29, 40 |
| Conread position: | 280-549 |
| Cow position: | chr8:48407294-48407025 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 204, 198 |
| Conread position: | 280-549 |
| Cow position: | chr8:48407462-48407193 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 208, 198 |
| Conread position: | 280-549 |
| Cow position: | chr8:55580906-55581175 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 280-549 |
| Cow position: | chr8:55581242-55581511 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 213, 196 |
| Conread position: | 280-551 |
| Cow position: | chr8:48406622-48406351 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 195 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 204, 198 |
| Conread position: | 280-552 |
| Cow position: | chr8:45201186-45201458 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 208, 198 |
| Conread position: | 280-552 |
| Cow position: | chr8:45201270-45201542 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 204, 196 |
| Conread position: | 280-552 |
| Cow position: | chr8:45201438-45201710 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 30, 40 |
| Conread position: | 280-552 |
| Cow position: | chr8:45201522-45201794 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 31, 40 |
| Conread position: | 280-552 |
| Cow position: | chr8:45201606-45201878 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 280-552 |
| Cow position: | chr8:46816633-46816905 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 208, 199 |
| Conread position: | 280-552 |
| Cow position: | chr8:48406706-48406434 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 43, 54 |
| Conread position: | 280-552 |
| Cow position: | chr8:55581074-55581346 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 204, 198 |
| Conread position: | 283-534 |
| Cow position: | chr8:55581497-55581748 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 199, 192 |
| Conread position: | 283-548 |
| Cow position: | chr8:46815964-46816229 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 214, 195 |
| Conread position: | 286-552 |
| Cow position: | chr8:45201360-45201626 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 286-552 |
| Cow position: | chr8:48406952-48406686 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 44, 49 |
| Conread position: | 289-543 |
| Cow position: | chr8:46815883-46816140 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 20, 31 |
| Conread position: | 290-551 |
| Cow position: | chr8:48407116-48406855 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 298-529 |
| Cow position: | chr8:6958062-6957831 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 198, 181 |
| Conread position: | 383-549 |
| Cow position: | chr8:6958061-6957895 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.