Cow genome map
| Conread name: | Ss1.1-rpigcb_14665.5 |
| Conread position: | 284-509 |
| Cow position: | chrX:37574719-37574935 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 11, 25 |
| Conread position: | 298-582 |
| Cow position: | chrX:34376828-34377112 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 72, 57 |
| Conread position: | 299-589 |
| Cow position: | chrX:34837174-34836891 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 11, 58 |
| Conread position: | 307-507 |
| Cow position: | chrX:37232303-37232500 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 40, 95 |
| Conread position: | 308-478 |
| Cow position: | chrX:13785472-13785296 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 308-508 |
| Cow position: | chrX:33493669-33493870 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 54, 33 |
| Conread position: | 308-509 |
| Cow position: | chrX:616371-616164 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 308-509 |
| Cow position: | chrX:5919387-5919587 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 118, 62 |
| Conread position: | 308-509 |
| Cow position: | chrX:7571795-7572000 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 58, 21 |
| Conread position: | 308-509 |
| Cow position: | chrX:14884067-14883861 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 308-509 |
| Cow position: | chrX:26881677-26881470 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 308-509 |
| Cow position: | chrX:31311920-31312124 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 308-509 |
| Cow position: | chrX:34401889-34402095 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 308-509 |
| Cow position: | chrX:45430125-45429927 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 100, 57 |
| Conread position: | 308-511 |
| Cow position: | chrX:17725865-17726072 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 37, 94 |
| Conread position: | 308-526 |
| Cow position: | chrX:7509033-7509251 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 58, 93 |
| Conread position: | 308-536 |
| Cow position: | chrX:37986124-37986347 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 97, 56 |
| Conread position: | 308-548 |
| Cow position: | chrX:40557790-40557548 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 58, 94 |
| Conread position: | 308-551 |
| Cow position: | chrX:29229901-29230133 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 56, 92 |
| Conread position: | 308-561 |
| Cow position: | chrX:7695639-7695895 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 25, 56 |
| Conread position: | 308-562 |
| Cow position: | chrX:34532412-34532663 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 69, 90 |
| Conread position: | 308-570 |
| Cow position: | chrX:878486-878218 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 99, 39 |
| Conread position: | 308-572 |
| Cow position: | chrX:37781220-37780950 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 57, 94 |
| Conread position: | 308-574 |
| Cow position: | chrX:20584215-20584485 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 37, 227 |
| Conread position: | 308-582 |
| Cow position: | chrX:9201441-9201715 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 58, 94 |
| Conread position: | 308-589 |
| Cow position: | chrX:22074691-22074977 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 110, 65 |
| Conread position: | 308-589 |
| Cow position: | chrX:29601939-29601649 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 308-602 |
| Cow position: | chrX:13177574-13177287 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 56, 89 |
| Conread position: | 308-602 |
| Cow position: | chrX:42927928-42927636 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 33, 94 |
| Conread position: | 308-612 |
| Cow position: | chrX:29542328-29542024 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 211 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 58, 202 |
| Conread position: | 308-658 |
| Cow position: | chrX:34505156-34504803 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 94, 222 |
| Conread position: | 309-553 |
| Cow position: | chrX:45845991-45846241 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 43, 91 |
| Conread position: | 309-574 |
| Cow position: | chrX:21986400-21986128 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 57, 91 |
| Conread position: | 309-582 |
| Cow position: | chrX:40685439-40685156 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 40, 91 |
| Conread position: | 309-589 |
| Cow position: | chrX:5118610-5118318 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 57, 74 |
| Conread position: | 310-526 |
| Cow position: | chrX:41884521-41884300 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 35, 92 |
| Conread position: | 310-563 |
| Cow position: | chrX:45414407-45414154 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 56, 90 |
| Conread position: | 310-589 |
| Cow position: | chrX:8869509-8869224 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 44, 18 |
| Conread position: | 313-562 |
| Cow position: | chrX:34411738-34411998 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 52, 89 |
| Conread position: | 315-551 |
| Cow position: | chrX:36067913-36068149 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 315-589 |
| Cow position: | chrX:34313927-34314201 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 51, 85 |
| Conread position: | 320-582 |
| Cow position: | chrX:9252256-9251990 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 46, 9 |
| Conread position: | 329-589 |
| Cow position: | chrX:1466073-1466340 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 23, 71 |
| Conread position: | 329-589 |
| Cow position: | chrX:29050159-29050423 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 37, 71 |
| Conread position: | 342-582 |
| Cow position: | chrX:19469575-19469342 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 66, 22 |
| Conread position: | 358-509 |
| Cow position: | chrX:46429875-46429724 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 51, 12 |
| Conread position: | 371-548 |
| Cow position: | chrX:27306410-27306585 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 55, 158 |
| Conread position: | 376-509 |
| Cow position: | chrX:19394515-19394648 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 48, 20 |
| Conread position: | 660-986 |
| Cow position: | chrX:42128764-42128445 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 243 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 66, 38 |
| Conread position: | 1064-1233 |
| Cow position: | chrX:42128408-42128247 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 17, 0 |
Show alignments to all cow chromosomes.