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Cow genome map

           
Conread name:
           
Ss1.1-rpigcb_5487.5
        

               
Conread position:
               
1-124
               

               
Cow position:
               
chr1:30504307-30504428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
19, 32
               

               
Conread position:
               
1-125
               

               
Cow position:
               
chr1:19545263-19545141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
1-135
               

               
Cow position:
               
chr1:89082944-89083078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-136
               

               
Cow position:
               
chr1:342308-342172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
1-137
               

               
Cow position:
               
chr1:33331252-33331118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
15, 72
               

               
Conread position:
               
1-137
               

               
Cow position:
               
chr1:81180143-81180002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
1-138
               

               
Cow position:
               
chr1:91875074-91874938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
1-139
               

               
Cow position:
               
chr1:15311705-15311841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
19, 29
               

               
Conread position:
               
1-139
               

               
Cow position:
               
chr1:41696891-41697030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
1-139
               

               
Cow position:
               
chr1:79590937-79591079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
1-139
               

               
Cow position:
               
chr1:84282901-84283047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
1-146
               

               
Cow position:
               
chr1:11832931-11832790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
21, 99
               

               
Conread position:
               
1-150
               

               
Cow position:
               
chr1:23488676-23488524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
1-152
               

               
Cow position:
               
chr1:34000742-34000896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
19, 135
               

               
Conread position:
               
1-152
               

               
Cow position:
               
chr1:92370525-92370374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
19, 83
               

               
Conread position:
               
1-153
               

               
Cow position:
               
chr1:20287951-20288104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
1-158
               

               
Cow position:
               
chr1:4027698-4027857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
19, 104
               

               
Conread position:
               
1-168
               

               
Cow position:
               
chr1:8532379-8532212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
56, 25
               

               
Conread position:
               
1-179
               

               
Cow position:
               
chr1:44164915-44165091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
19, 142
               

               
Conread position:
               
1-180
               

               
Cow position:
               
chr1:22728884-22729062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
19, 160
               

               
Conread position:
               
1-180
               

               
Cow position:
               
chr1:41004530-41004354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
18, 144
               

               
Conread position:
               
1-180
               

               
Cow position:
               
chr1:71946539-71946364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
22, 42
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chr1:84255591-84255774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
19, 144
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chr1:99095197-99095371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
65, 21
               

               
Conread position:
               
1-189
               

               
Cow position:
               
chr1:44769275-44769092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
19, 29
               

               
Conread position:
               
1-190
               

               
Cow position:
               
chr1:33719950-33720133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
19, 114
               

               
Conread position:
               
1-190
               

               
Cow position:
               
chr1:85593607-85593792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
21, 148
               

               
Conread position:
               
1-192
               

               
Cow position:
               
chr1:20544128-20544316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
19, 60
               

               
Conread position:
               
1-194
               

               
Cow position:
               
chr1:3340774-3340958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
21, 83
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chr1:3776781-3776597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
15, 34
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chr1:63905638-63905451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
19, 34
               

               
Conread position:
               
1-198
               

               
Cow position:
               
chr1:51769920-51770111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
21, 142
               

               
Conread position:
               
1-198
               

               
Cow position:
               
chr1:56748426-56748625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
20, 162
               

               
Conread position:
               
1-199
               

               
Cow position:
               
chr1:11914041-11913854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
67, 14
               

               
Conread position:
               
1-199
               

               
Cow position:
               
chr1:24413276-24413476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
18, 150
               

               
Conread position:
               
1-199
               

               
Cow position:
               
chr1:27145817-27145626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
20, 143
               

               
Conread position:
               
1-200
               

               
Cow position:
               
chr1:55705417-55705220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
19, 122
               

               
Conread position:
               
1-200
               

               
Cow position:
               
chr1:70538440-70538637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
19, 158
               

               
Conread position:
               
1-200
               

               
Cow position:
               
chr1:71079120-71078934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr1:43505359-43505558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
147, 19
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr1:61391956-61391755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
21, 122
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr1:81613222-81613418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
19, 117
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr1:82861611-82861810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
20, 134
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr1:91800769-91800570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
19, 106
               

               
Conread position:
               
1-204
               

               
Cow position:
               
chr1:3323694-3323898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
19, 111
               

               
Conread position:
               
1-204
               

               
Cow position:
               
chr1:79663829-79663643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
19, 65
               

               
Conread position:
               
1-204
               

               
Cow position:
               
chr1:90864463-90864263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
20, 136
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr1:4573357-4573551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
19, 29
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr1:15333714-15333926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr1:18936997-18936803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
19, 111
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr1:28176836-28177039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
19, 141
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr1:31235095-31234900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
19, 115
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr1:31934347-31934538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
19, 29
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr1:35162240-35162441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
19, 125
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr1:43340786-43340582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
19, 141
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr1:45535538-45535738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
19, 139
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr1:53495300-53495499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
19, 121
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr1:53622795-53622989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
19, 29
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr1:56711786-56711568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
19, 25
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr1:63434973-63434775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
19, 53
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr1:64251215-64251014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
131, 28
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr1:68276243-68276447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
25, 135
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr1:68619101-68618901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
19, 146
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr1:70434836-70435029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
19, 104
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr1:71818625-71818432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
19, 142
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr1:74947290-74947086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
19, 139
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr1:74956187-74955986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
67, 18
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr1:77620384-77620577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
19, 60
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr1:79278609-79278415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr1:82337948-82337745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
19, 161
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr1:82504803-82505007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
19, 147
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr1:88618430-88618627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
19, 33
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr1:101551294-101551495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
19, 97
               

               
Conread position:
               
1-206
               

               
Cow position:
               
chr1:92369565-92369768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
19, 122
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr1:45555200-45555401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
21, 32
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr1:6788453-6788247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
19, 139
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr1:13548153-13547949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
53, 86
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr1:56674293-56674090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
19, 25
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr1:61742627-61742425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
15, 22
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr1:101701810-101701609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
54, 19
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr1:102349919-102349710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
61, 19
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr1:1165438-1165636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
19, 83
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr1:1991588-1991382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
20, 85
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr1:6305032-6304827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
21, 143
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr1:11226409-11226209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
19, 84
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr1:16962177-16961973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
19, 134
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr1:19885221-19885420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
19, 65
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr1:24235684-24235482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
18, 117
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr1:25734690-25734905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
10, 144
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr1:33207038-33206844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
19, 112
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr1:34159668-34159872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
19, 25
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr1:34771672-34771466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
19, 113
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr1:43872498-43872282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr1:45289037-45288834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
58, 18
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr1:49433428-49433227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
19, 32
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr1:53369911-53370120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
18, 100
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr1:55146638-55146836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
19, 44
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr1:55163759-55163956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
13, 17
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr1:55429123-55428919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
19, 91
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr1:64804271-64804065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
19, 118
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr1:70028415-70028617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
19, 139
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr1:71119345-71119558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
19, 88
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr1:72035093-72034887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
19, 152
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr1:81228503-81228297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
64, 28
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr1:81913315-81913114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
19, 73
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr1:86113577-86113363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
50, 70
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr1:86578785-86579002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
107, 16
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr1:87095398-87095177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr1:89076800-89076596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
19, 136
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr1:89742171-89741963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
19, 125
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr1:95654879-95654676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
19, 92
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr1:99609202-99609406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
65, 25
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr1:99642531-99642332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
1-214
               

               
Cow position:
               
chr1:68862867-68863075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
84, 103
               

               
Conread position:
               
1-214
               

               
Cow position:
               
chr1:74927713-74927924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
20, 95
               

               
Conread position:
               
1-218
               

               
Cow position:
               
chr1:61564629-61564846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
20, 132
               

               
Conread position:
               
1-221
               

               
Cow position:
               
chr1:724571-724788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
18, 46
               

               
Conread position:
               
1-221
               

               
Cow position:
               
chr1:57880956-57880736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
20, 135
               

               
Conread position:
               
1-222
               

               
Cow position:
               
chr1:71227913-71228140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
19, 146
               

               
Conread position:
               
2-192
               

               
Cow position:
               
chr1:71257645-71257454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
17, 157
               

               
Conread position:
               
2-196
               

               
Cow position:
               
chr1:58419770-58419958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
20, 140
               

               
Conread position:
               
2-200
               

               
Cow position:
               
chr1:86110898-86110711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
15, 132
               

               
Conread position:
               
2-203
               

               
Cow position:
               
chr1:25383496-25383697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
18, 132
               

               
Conread position:
               
2-203
               

               
Cow position:
               
chr1:98551550-98551749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
18, 59
               

               
Conread position:
               
2-205
               

               
Cow position:
               
chr1:10655315-10655513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
18, 134
               

               
Conread position:
               
2-211
               

               
Cow position:
               
chr1:21787164-21787373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
18, 161
               

               
Conread position:
               
2-211
               

               
Cow position:
               
chr1:95557870-95558074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
18, 85
               

               
Conread position:
               
2-222
               

               
Cow position:
               
chr1:98360571-98360348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
18, 129
               

               
Conread position:
               
3-118
               

               
Cow position:
               
chr1:7186627-7186746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
3-132
               

               
Cow position:
               
chr1:83593970-83593838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
3-137
               

               
Cow position:
               
chr1:95327314-95327181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
17, 88
               

               
Conread position:
               
3-139
               

               
Cow position:
               
chr1:4589638-4589503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
55, 40
               

               
Conread position:
               
3-139
               

               
Cow position:
               
chr1:95215347-95215209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
3-152
               

               
Cow position:
               
chr1:75967266-75967416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
3-192
               

               
Cow position:
               
chr1:33811764-33811948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
17, 118
               

               
Conread position:
               
3-199
               

               
Cow position:
               
chr1:37322167-37321973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
17, 156
               

               
Conread position:
               
3-200
               

               
Cow position:
               
chr1:68845647-68845458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
60, 12
               

               
Conread position:
               
3-200
               

               
Cow position:
               
chr1:93528529-93528725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
15, 141
               

               
Conread position:
               
3-203
               

               
Cow position:
               
chr1:64421169-64421360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
19, 80
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chr1:19568687-19568882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
17, 52
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chr1:24445792-24445596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
15, 44
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chr1:32341370-32341177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
17, 74
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chr1:40192848-40192664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
17, 58
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chr1:41181678-41181876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
17, 132
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chr1:56634937-56635129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
17, 26
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chr1:74084363-74084157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
8, 128
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chr1:81470967-81471164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
17, 137
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chr1:90640863-90641068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
17, 140
               

               
Conread position:
               
3-210
               

               
Cow position:
               
chr1:61724195-61723983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
8, 14
               

               
Conread position:
               
3-211
               

               
Cow position:
               
chr1:11729016-11729212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
15, 137
               

               
Conread position:
               
3-211
               

               
Cow position:
               
chr1:31608059-31607851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
17, 27
               

               
Conread position:
               
3-211
               

               
Cow position:
               
chr1:34856799-34856591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
17, 30
               

               
Conread position:
               
3-211
               

               
Cow position:
               
chr1:42555100-42555303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
17, 30
               

               
Conread position:
               
3-211
               

               
Cow position:
               
chr1:43703243-43703446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
3-211
               

               
Cow position:
               
chr1:57297308-57297519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
27, 163
               

               
Conread position:
               
3-211
               

               
Cow position:
               
chr1:57639682-57639478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
17, 48
               

               
Conread position:
               
3-211
               

               
Cow position:
               
chr1:72068999-72068798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
3-211
               

               
Cow position:
               
chr1:75141837-75142034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
17, 93
               

               
Conread position:
               
3-211
               

               
Cow position:
               
chr1:78809722-78809913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
3-211
               

               
Cow position:
               
chr1:79165251-79165045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
17, 138
               

               
Conread position:
               
3-211
               

               
Cow position:
               
chr1:91066319-91066114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
13, 140
               

               
Conread position:
               
3-211
               

               
Cow position:
               
chr1:95176774-95176976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
17, 95
               

               
Conread position:
               
3-219
               

               
Cow position:
               
chr1:75347455-75347671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
17, 156
               

               
Conread position:
               
3-221
               

               
Cow position:
               
chr1:81563571-81563793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
3-222
               

               
Cow position:
               
chr1:67305406-67305192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
17, 77
               

               
Conread position:
               
3-223
               

               
Cow position:
               
chr1:91816935-91816722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
18, 80
               

               
Conread position:
               
4-131
               

               
Cow position:
               
chr1:26201056-26201183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
16, 57
               

               
Conread position:
               
4-132
               

               
Cow position:
               
chr1:57900903-57900775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
16, 82
               

               
Conread position:
               
4-137
               

               
Cow position:
               
chr1:98708278-98708410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
4-140
               

               
Cow position:
               
chr1:94212069-94212203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
15, 115
               

               
Conread position:
               
4-140
               

               
Cow position:
               
chr1:101280880-101280747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
12, 110
               

               
Conread position:
               
4-152
               

               
Cow position:
               
chr1:69532754-69532609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
84, 13
               

               
Conread position:
               
4-162
               

               
Cow position:
               
chr1:49839343-49839498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
12, 57
               

               
Conread position:
               
4-170
               

               
Cow position:
               
chr1:92963234-92963395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
13, 63
               

               
Conread position:
               
4-179
               

               
Cow position:
               
chr1:10519203-10519033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
54, 13
               

               
Conread position:
               
4-179
               

               
Cow position:
               
chr1:91142317-91142143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
17, 30
               

               
Conread position:
               
4-180
               

               
Cow position:
               
chr1:4414372-4414199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
18, 129
               

               
Conread position:
               
4-180
               

               
Cow position:
               
chr1:12596066-12595895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
4-180
               

               
Cow position:
               
chr1:89342157-89341980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
137, 13
               

               
Conread position:
               
4-180
               

               
Cow position:
               
chr1:99039517-99039349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
12, 94
               

               
Conread position:
               
4-186
               

               
Cow position:
               
chr1:75933108-75933287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
12, 136
               

               
Conread position:
               
4-188
               

               
Cow position:
               
chr1:55357450-55357273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
16, 137
               

               
Conread position:
               
4-188
               

               
Cow position:
               
chr1:95056891-95057068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
16, 117
               

               
Conread position:
               
4-190
               

               
Cow position:
               
chr1:25386887-25387071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
58, 134
               

               
Conread position:
               
4-192
               

               
Cow position:
               
chr1:34686030-34686206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
14, 57
               

               
Conread position:
               
4-192
               

               
Cow position:
               
chr1:50679450-50679261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
19, 161
               

               
Conread position:
               
4-192
               

               
Cow position:
               
chr1:78794900-78794718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
12, 78
               

               
Conread position:
               
4-192
               

               
Cow position:
               
chr1:85596779-85596962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
16, 46
               

               
Conread position:
               
4-196
               

               
Cow position:
               
chr1:28563733-28563544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
16, 100
               

               
Conread position:
               
4-197
               

               
Cow position:
               
chr1:11873521-11873338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
12, 26
               

               
Conread position:
               
4-199
               

               
Cow position:
               
chr1:49317661-49317471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
16, 137
               

               
Conread position:
               
4-199
               

               
Cow position:
               
chr1:54478160-54478354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
16, 158
               

               
Conread position:
               
4-200
               

               
Cow position:
               
chr1:88652466-88652657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
17, 114
               

               
Conread position:
               
4-203
               

               
Cow position:
               
chr1:3244689-3244881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
12, 57
               

               
Conread position:
               
4-203
               

               
Cow position:
               
chr1:6941301-6941487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
12, 57
               

               
Conread position:
               
4-203
               

               
Cow position:
               
chr1:6958714-6958900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
12, 57
               

               
Conread position:
               
4-203
               

               
Cow position:
               
chr1:12464828-12464635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
4-203
               

               
Cow position:
               
chr1:43389212-43389019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
16, 43
               

               
Conread position:
               
4-203
               

               
Cow position:
               
chr1:52039472-52039667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
12, 56
               

               
Conread position:
               
4-204
               

               
Cow position:
               
chr1:16061183-16060974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
16, 30
               

               
Conread position:
               
4-204
               

               
Cow position:
               
chr1:84239276-84239079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
156, 0
               

               
Conread position:
               
4-205
               

               
Cow position:
               
chr1:635027-635225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
16, 80
               

               
Conread position:
               
4-205
               

               
Cow position:
               
chr1:3137763-3137957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
15, 139
               

               
Conread position:
               
4-205
               

               
Cow position:
               
chr1:3243774-3243967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
16, 22
               

               
Conread position:
               
4-205
               

               
Cow position:
               
chr1:3923959-3923769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
16, 117
               

               
Conread position:
               
4-205
               

               
Cow position:
               
chr1:4290994-4291197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
18, 161
               

               
Conread position:
               
4-205
               

               
Cow position:
               
chr1:20002400-20002197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
58, 22
               

               
Conread position:
               
4-205
               

               
Cow position:
               
chr1:32001485-32001282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
14, 31
               

               
Conread position:
               
4-205
               

               
Cow position:
               
chr1:39069115-39068925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
4-205
               

               
Cow position:
               
chr1:43358179-43357979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
17, 131
               

               
Conread position:
               
4-205
               

               
Cow position:
               
chr1:51445715-51445917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
16, 109
               

               
Conread position:
               
4-205
               

               
Cow position:
               
chr1:55135669-55135862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
15, 76
               

               
Conread position:
               
4-205
               

               
Cow position:
               
chr1:57635302-57635493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
4-205
               

               
Cow position:
               
chr1:59518756-59518953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
16, 87
               

               
Conread position:
               
4-205
               

               
Cow position:
               
chr1:63138674-63138872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
12, 131
               

               
Conread position:
               
4-205
               

               
Cow position:
               
chr1:63390938-63390736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
22, 150
               

               
Conread position:
               
4-205
               

               
Cow position:
               
chr1:80988182-80988382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
16, 80
               

               
Conread position:
               
4-205
               

               
Cow position:
               
chr1:94226712-94226524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
14, 26
               

               
Conread position:
               
4-205
               

               
Cow position:
               
chr1:96478531-96478731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
56, 29
               

               
Conread position:
               
4-205
               

               
Cow position:
               
chr1:96964156-96964349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
14, 48
               

               
Conread position:
               
4-205
               

               
Cow position:
               
chr1:100551806-100552001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
62, 16
               

               
Conread position:
               
4-206
               

               
Cow position:
               
chr1:68817963-68817765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
16, 143
               

               
Conread position:
               
4-206
               

               
Cow position:
               
chr1:68827070-68826872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
12, 140
               

               
Conread position:
               
4-206
               

               
Cow position:
               
chr1:76222855-76222656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
12, 76
               

               
Conread position:
               
4-208
               

               
Cow position:
               
chr1:26702372-26702169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
14, 158
               

               
Conread position:
               
4-208
               

               
Cow position:
               
chr1:36874850-36875064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
16, 70
               

               
Conread position:
               
4-210
               

               
Cow position:
               
chr1:4374503-4374301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
16, 43
               

               
Conread position:
               
4-210
               

               
Cow position:
               
chr1:68763846-68763648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
16, 63
               

               
Conread position:
               
4-211
               

               
Cow position:
               
chr1:20667906-20667705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
16, 149
               

               
Conread position:
               
4-211
               

               
Cow position:
               
chr1:24542746-24542533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
25, 175
               

               
Conread position:
               
4-211
               

               
Cow position:
               
chr1:26729563-26729755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
16, 26
               

               
Conread position:
               
4-211
               

               
Cow position:
               
chr1:31348605-31348400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
16, 128
               

               
Conread position:
               
4-211
               

               
Cow position:
               
chr1:34300712-34300514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
15, 26
               

               
Conread position:
               
4-211
               

               
Cow position:
               
chr1:36998028-36998222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
12, 120
               

               
Conread position:
               
4-211
               

               
Cow position:
               
chr1:38753753-38753960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
14, 132
               

               
Conread position:
               
4-211
               

               
Cow position:
               
chr1:43380192-43379987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
16, 79
               

               
Conread position:
               
4-211
               

               
Cow position:
               
chr1:44506803-44507010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
12, 141
               

               
Conread position:
               
4-211
               

               
Cow position:
               
chr1:51654246-51654461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
4-211
               

               
Cow position:
               
chr1:54199548-54199342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
16, 148
               

               
Conread position:
               
4-211
               

               
Cow position:
               
chr1:60032763-60032562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
18, 139
               

               
Conread position:
               
4-211
               

               
Cow position:
               
chr1:69695167-69694956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
16, 150
               

               
Conread position:
               
4-211
               

               
Cow position:
               
chr1:73561814-73561610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
16, 103
               

               
Conread position:
               
4-211
               

               
Cow position:
               
chr1:81355868-81355666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
14, 30
               

               
Conread position:
               
4-211
               

               
Cow position:
               
chr1:82443621-82443417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
16, 143
               

               
Conread position:
               
4-211
               

               
Cow position:
               
chr1:94261383-94261573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
53, 15
               

               
Conread position:
               
4-211
               

               
Cow position:
               
chr1:100400366-100400155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
16, 147
               

               
Conread position:
               
4-211
               

               
Cow position:
               
chr1:101632503-101632300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
16, 136
               

               
Conread position:
               
4-212
               

               
Cow position:
               
chr1:49077507-49077293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
16, 151
               

               
Conread position:
               
4-215
               

               
Cow position:
               
chr1:68217523-68217320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
16, 80
               

               
Conread position:
               
4-215
               

               
Cow position:
               
chr1:87072540-87072737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
12, 62
               

               
Conread position:
               
4-220
               

               
Cow position:
               
chr1:51394260-51394465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
16, 26
               

               
Conread position:
               
4-221
               

               
Cow position:
               
chr1:71045590-71045803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
12, 136
               

               
Conread position:
               
5-205
               

               
Cow position:
               
chr1:101634541-101634743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
15, 112
               

               
Conread position:
               
5-210
               

               
Cow position:
               
chr1:96081320-96081516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
8, 82
               

               
Conread position:
               
6-133
               

               
Cow position:
               
chr1:97806626-97806754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
6-135
               

               
Cow position:
               
chr1:82884552-82884422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
7-203
               

               
Cow position:
               
chr1:88913156-88913349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
11, 129
               

               
Conread position:
               
8-211
               

               
Cow position:
               
chr1:7609455-7609657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
25, 151
               

               
Conread position:
               
9-147
               

               
Cow position:
               
chr1:3962851-3962716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
11, 52
               

               
Conread position:
               
9-186
               

               
Cow position:
               
chr1:100741128-100741301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
7, 52
               

               
Conread position:
               
9-200
               

               
Cow position:
               
chr1:1403636-1403455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
9-203
               

               
Cow position:
               
chr1:52994868-52995053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
11, 56
               

               
Conread position:
               
9-205
               

               
Cow position:
               
chr1:14309197-14309001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
12, 140
               

               
Conread position:
               
9-205
               

               
Cow position:
               
chr1:51684644-51684838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
11, 21
               

               
Conread position:
               
9-205
               

               
Cow position:
               
chr1:76019850-76019662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
11, 25
               

               
Conread position:
               
9-211
               

               
Cow position:
               
chr1:4032466-4032669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
11, 130
               

               
Conread position:
               
9-211
               

               
Cow position:
               
chr1:21508231-21508430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
11, 79
               

               
Conread position:
               
9-211
               

               
Cow position:
               
chr1:54156897-54156697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
12, 115
               

               
Conread position:
               
9-211
               

               
Cow position:
               
chr1:77683198-77683389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
12, 133
               

               
Conread position:
               
9-211
               

               
Cow position:
               
chr1:97696581-97696784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
11, 133
               

               
Conread position:
               
9-211
               

               
Cow position:
               
chr1:98310908-98311107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
43, 8
               

               
Conread position:
               
10-211
               

               
Cow position:
               
chr1:36932001-36932191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
11-205
               

               
Cow position:
               
chr1:70026501-70026315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
9, 126
               

               
Conread position:
               
11-210
               

               
Cow position:
               
chr1:9470555-9470362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
9, 125
               

               
Conread position:
               
11-210
               

               
Cow position:
               
chr1:56477435-56477628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
9, 32
               

               
Conread position:
               
11-211
               

               
Cow position:
               
chr1:93554686-93554873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
9, 74
               

               
Conread position:
               
12-211
               

               
Cow position:
               
chr1:33409784-33409588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
9, 121
               

               
Conread position:
               
13-200
               

               
Cow position:
               
chr1:38544616-38544438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
10, 24
               

               
Conread position:
               
14-205
               

               
Cow position:
               
chr1:102647426-102647242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
47, 88
               

               
Conread position:
               
15-211
               

               
Cow position:
               
chr1:101946859-101946677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
16-192
               

               
Cow position:
               
chr1:78184535-78184715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
41, 125
               

               
Conread position:
               
16-211
               

               
Cow position:
               
chr1:31272592-31272405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
16-212
               

               
Cow position:
               
chr1:53425022-53425214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
17, 131
               

               
Conread position:
               
17-140
               

               
Cow position:
               
chr1:5409764-5409641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
41, 12
               

               
Conread position:
               
17-140
               

               
Cow position:
               
chr1:65909376-65909500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
17-176
               

               
Cow position:
               
chr1:45673560-45673717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
41, 15
               

               
Conread position:
               
17-177
               

               
Cow position:
               
chr1:77462210-77462367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
17-180
               

               
Cow position:
               
chr1:70312955-70312799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
17-192
               

               
Cow position:
               
chr1:1801989-1802159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
46, 83
               

               
Conread position:
               
17-192
               

               
Cow position:
               
chr1:84240745-84240910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
17-192
               

               
Cow position:
               
chr1:85826196-85826365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
17-200
               

               
Cow position:
               
chr1:76470502-76470681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
40, 123
               

               
Conread position:
               
17-201
               

               
Cow position:
               
chr1:24655811-24655985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
49, 101
               

               
Conread position:
               
17-203
               

               
Cow position:
               
chr1:11770441-11770263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
50, 104
               

               
Conread position:
               
17-204
               

               
Cow position:
               
chr1:42398347-42398161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
43, 136
               

               
Conread position:
               
17-205
               

               
Cow position:
               
chr1:5579909-5580092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
108, 42
               

               
Conread position:
               
17-205
               

               
Cow position:
               
chr1:22448737-22448550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
17-205
               

               
Cow position:
               
chr1:43447977-43447797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
86, 15
               

               
Conread position:
               
17-205
               

               
Cow position:
               
chr1:46030507-46030330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
46, 125
               

               
Conread position:
               
17-205
               

               
Cow position:
               
chr1:54258413-54258598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
41, 87
               

               
Conread position:
               
17-205
               

               
Cow position:
               
chr1:101834674-101834850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
17-209
               

               
Cow position:
               
chr1:39418272-39418076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
49, 101
               

               
Conread position:
               
17-210
               

               
Cow position:
               
chr1:20000901-20000712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
17-210
               

               
Cow position:
               
chr1:41115865-41115679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
165, 123
               

               
Conread position:
               
17-211
               

               
Cow position:
               
chr1:7971271-7971449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
176, 64
               

               
Conread position:
               
17-211
               

               
Cow position:
               
chr1:12871157-12870972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
17-211
               

               
Cow position:
               
chr1:13413880-13414068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
38, 29
               

               
Conread position:
               
17-211
               

               
Cow position:
               
chr1:22192613-22192806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
45, 107
               

               
Conread position:
               
17-211
               

               
Cow position:
               
chr1:42545934-42545742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
49, 12
               

               
Conread position:
               
17-211
               

               
Cow position:
               
chr1:44125794-44125598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
117, 15
               

               
Conread position:
               
17-211
               

               
Cow position:
               
chr1:57420878-57420694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
49, 123
               

               
Conread position:
               
17-211
               

               
Cow position:
               
chr1:62519207-62519400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
46, 116
               

               
Conread position:
               
17-211
               

               
Cow position:
               
chr1:68951477-68951664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
40, 49
               

               
Conread position:
               
17-211
               

               
Cow position:
               
chr1:72011960-72011776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
45, 123
               

               
Conread position:
               
17-211
               

               
Cow position:
               
chr1:81868876-81868692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
17-211
               

               
Cow position:
               
chr1:89485426-89485617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
72, 23
               

               
Conread position:
               
17-211
               

               
Cow position:
               
chr1:90868589-90868404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
17-211
               

               
Cow position:
               
chr1:96365519-96365701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
17-211
               

               
Cow position:
               
chr1:98413616-98413809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
44, 54
               

               
Conread position:
               
17-222
               

               
Cow position:
               
chr1:43352807-43352607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
29, 37
               

               
Conread position:
               
18-192
               

               
Cow position:
               
chr1:64962818-64962649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
39, 87
               

               
Conread position:
               
18-198
               

               
Cow position:
               
chr1:5873121-5872943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
42, 112
               

               
Conread position:
               
18-200
               

               
Cow position:
               
chr1:22525730-22525904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
18-203
               

               
Cow position:
               
chr1:91811638-91811811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
18-204
               

               
Cow position:
               
chr1:100770898-100770723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
28, 15
               

               
Conread position:
               
18-205
               

               
Cow position:
               
chr1:24778134-24777958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
18-205
               

               
Cow position:
               
chr1:30047740-30047566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
18-210
               

               
Cow position:
               
chr1:60281221-60281409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
18-211
               

               
Cow position:
               
chr1:24534402-24534217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
18-211
               

               
Cow position:
               
chr1:50931125-50930939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
18-211
               

               
Cow position:
               
chr1:52956104-52956295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
135, 126
               

               
Conread position:
               
18-211
               

               
Cow position:
               
chr1:53374282-53374470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
37, 21
               

               
Conread position:
               
18-211
               

               
Cow position:
               
chr1:65318426-65318612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
39, 76
               

               
Conread position:
               
18-212
               

               
Cow position:
               
chr1:73761505-73761317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
18-224
               

               
Cow position:
               
chr1:23512804-23512609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
19-210
               

               
Cow position:
               
chr1:47008884-47009069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
21-139
               

               
Cow position:
               
chr1:101789218-101789100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
22-210
               

               
Cow position:
               
chr1:6228730-6228548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
36, 113
               

               
Conread position:
               
25-210
               

               
Cow position:
               
chr1:53308531-53308353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
40, 22
               

               
Conread position:
               
29-140
               

               
Cow position:
               
chr1:21835807-21835916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
29-191
               

               
Cow position:
               
chr1:29901110-29900948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
111, 36
               

               
Conread position:
               
29-203
               

               
Cow position:
               
chr1:6961769-6961937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
37, 108
               

               
Conread position:
               
29-203
               

               
Cow position:
               
chr1:8129105-8128939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
29-205
               

               
Cow position:
               
chr1:48444332-48444163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
29-205
               

               
Cow position:
               
chr1:57264134-57263961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
29-210
               

               
Cow position:
               
chr1:47886627-47886444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
32, 123
               

               
Conread position:
               
29-211
               

               
Cow position:
               
chr1:85550216-85550041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
32-211
               

               
Cow position:
               
chr1:64302383-64302207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
34-203
               

               
Cow position:
               
chr1:89349829-89349994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
83, 88
               

               
Conread position:
               
34-204
               

               
Cow position:
               
chr1:53369072-53369244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
23, 39
               

               
Conread position:
               
34-205
               

               
Cow position:
               
chr1:10778433-10778594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
36-190
               

               
Cow position:
               
chr1:72105282-72105428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
39-210
               

               
Cow position:
               
chr1:8984813-8984646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
109, 81
               

               
Conread position:
               
40-181
               

               
Cow position:
               
chr1:4293928-4294064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
114, 102
               

               
Conread position:
               
41-195
               

               
Cow position:
               
chr1:100706003-100706152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
25, 105
               

               
Conread position:
               
41-205
               

               
Cow position:
               
chr1:42869062-42868905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
84, 19
               

               
Conread position:
               
41-205
               

               
Cow position:
               
chr1:93228400-93228556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
41-205
               

               
Cow position:
               
chr1:93810303-93810460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
69, 101
               

               
Conread position:
               
42-211
               

               
Cow position:
               
chr1:64572388-64572552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
43-153
               

               
Cow position:
               
chr1:59020152-59020263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
43-205
               

               
Cow position:
               
chr1:8349441-8349287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
22, 67
               

               
Conread position:
               
45-145
               

               
Cow position:
               
chr1:3607688-3607788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
101
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
45-205
               

               
Cow position:
               
chr1:43311898-43311741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
47-211
               

               
Cow position:
               
chr1:22394674-22394840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
50-213
               

               
Cow position:
               
chr1:61283935-61284093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
121, 15
               

               
Conread position:
               
51-205
               

               
Cow position:
               
chr1:81580057-81580209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
12, 34
               

               
Conread position:
               
52-210
               

               
Cow position:
               
chr1:52052835-52052681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
56-211
               

               
Cow position:
               
chr1:61543029-61542881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
57-208
               

               
Cow position:
               
chr1:43822290-43822437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
58-205
               

               
Cow position:
               
chr1:30189036-30189184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
13, 103
               

               
Conread position:
               
59-212
               

               
Cow position:
               
chr1:22823798-22823943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
61-211
               

               
Cow position:
               
chr1:6972423-6972563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
69-204
               

               
Cow position:
               
chr1:65103521-65103652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
133, 47
               

               
Conread position:
               
75-205
               

               
Cow position:
               
chr1:82880552-82880677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
60, 0
               
Show alignments to all cow chromosomes.