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Cow genome map

           
Conread name:
           
Ss1.1-rpigcb_5487.5
        

               
Conread position:
               
1-127
               

               
Cow position:
               
chr5:46512911-46512784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
1-139
               

               
Cow position:
               
chr5:4220836-4220976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
1-140
               

               
Cow position:
               
chr5:19778728-19778587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
1-140
               

               
Cow position:
               
chr5:24996371-24996231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
1-140
               

               
Cow position:
               
chr5:45036877-45037013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
56, 14
               

               
Conread position:
               
1-140
               

               
Cow position:
               
chr5:62107639-62107499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
19, 65
               

               
Conread position:
               
1-140
               

               
Cow position:
               
chr5:65933076-65932936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
65, 18
               

               
Conread position:
               
1-147
               

               
Cow position:
               
chr5:60520017-60520162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
18, 32
               

               
Conread position:
               
1-148
               

               
Cow position:
               
chr5:24616267-24616115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
1-149
               

               
Cow position:
               
chr5:30816571-30816721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
21, 45
               

               
Conread position:
               
1-152
               

               
Cow position:
               
chr5:61600268-61600423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
1-152
               

               
Cow position:
               
chr5:64393010-64393161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
21, 147
               

               
Conread position:
               
1-153
               

               
Cow position:
               
chr5:21525020-21525176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
1-173
               

               
Cow position:
               
chr5:28324204-28324380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
19, 169
               

               
Conread position:
               
1-179
               

               
Cow position:
               
chr5:44673539-44673721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
22, 165
               

               
Conread position:
               
1-180
               

               
Cow position:
               
chr5:28927737-28927560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
20, 160
               

               
Conread position:
               
1-180
               

               
Cow position:
               
chr5:34561864-34562042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
19, 147
               

               
Conread position:
               
1-187
               

               
Cow position:
               
chr5:59443396-59443215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
19, 97
               

               
Conread position:
               
1-190
               

               
Cow position:
               
chr5:55176742-55176931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
17, 144
               

               
Conread position:
               
1-192
               

               
Cow position:
               
chr5:20345012-20345200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
57, 102
               

               
Conread position:
               
1-198
               

               
Cow position:
               
chr5:43816756-43816562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
19, 91
               

               
Conread position:
               
1-199
               

               
Cow position:
               
chr5:16508946-16509145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
30, 163
               

               
Conread position:
               
1-199
               

               
Cow position:
               
chr5:37645929-37646120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
19, 34
               

               
Conread position:
               
1-199
               

               
Cow position:
               
chr5:43992176-43992369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
65, 32
               

               
Conread position:
               
1-199
               

               
Cow position:
               
chr5:47888859-47888666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
19, 118
               

               
Conread position:
               
1-200
               

               
Cow position:
               
chr5:6045143-6045340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
21, 161
               

               
Conread position:
               
1-200
               

               
Cow position:
               
chr5:22242930-22242726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
19, 111
               

               
Conread position:
               
1-200
               

               
Cow position:
               
chr5:40039915-40039722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
19, 32
               

               
Conread position:
               
1-200
               

               
Cow position:
               
chr5:52667882-52668076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
21, 133
               

               
Conread position:
               
1-200
               

               
Cow position:
               
chr5:57575621-57575817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
19, 127
               

               
Conread position:
               
1-200
               

               
Cow position:
               
chr5:65941398-65941204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
19, 60
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr5:7044855-7044656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
19, 146
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr5:14314377-14314577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
19, 132
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr5:15426381-15426587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
19, 185
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr5:15598378-15598186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
19, 32
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr5:57935257-57935059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
19, 132
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr5:67243781-67243970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
19, 90
               

               
Conread position:
               
1-204
               

               
Cow position:
               
chr5:22643362-22643176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
40, 14
               

               
Conread position:
               
1-204
               

               
Cow position:
               
chr5:35459439-35459244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
19, 30
               

               
Conread position:
               
1-204
               

               
Cow position:
               
chr5:42777620-42777815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
15, 36
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr5:1027837-1027643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
62, 19
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr5:13691719-13691516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
20, 130
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr5:26262820-26262623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
19, 67
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr5:27403387-27403178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
22, 153
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr5:34049965-34050169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
59, 19
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr5:37646694-37646492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
19, 43
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr5:40388015-40387821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr5:42064053-42064256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
19, 29
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr5:47871195-47870990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
21, 154
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr5:49362136-49361941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
19, 82
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr5:52000074-52000274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
19, 147
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr5:52165327-52165126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
19, 148
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr5:55955761-55955959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
19, 55
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr5:59115236-59115437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
66, 18
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr5:72564617-72564815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
60, 19
               

               
Conread position:
               
1-208
               

               
Cow position:
               
chr5:27015536-27015734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
19, 116
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr5:40357015-40356791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr5:65776530-65776330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
20, 132
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr5:75437041-75436831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
19, 145
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr5:4032139-4031933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
17, 29
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr5:32975696-32975497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
19, 29
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr5:57327648-57327857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
19, 133
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr5:65924844-65924634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
21, 151
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr5:66815721-66815515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
19, 33
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr5:2309708-2309499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
18, 120
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr5:9390391-9390610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
21, 145
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr5:11427386-11427176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
19, 132
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr5:21828720-21828925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr5:30950064-30949858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
19, 111
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr5:46122498-46122296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
19, 127
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr5:49685424-49685214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
20, 147
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr5:50722902-50723103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
66, 14
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr5:50821634-50821840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
19, 149
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr5:54060129-54060333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
61, 120
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr5:54713881-54713674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
48, 17
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr5:62985372-62985581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
19, 99
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr5:69520746-69520948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr5:35235853-35235646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
65, 15
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr5:9090168-9089954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
19, 117
               

               
Conread position:
               
2-138
               

               
Cow position:
               
chr5:5111220-5111085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
18, 41
               

               
Conread position:
               
2-139
               

               
Cow position:
               
chr5:35145209-35145340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
2-203
               

               
Cow position:
               
chr5:58793758-58793558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
16, 38
               

               
Conread position:
               
2-210
               

               
Cow position:
               
chr5:65887158-65886954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
19, 136
               

               
Conread position:
               
3-178
               

               
Cow position:
               
chr5:53146029-53145859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
17, 61
               

               
Conread position:
               
3-179
               

               
Cow position:
               
chr5:56070710-56070884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
19, 121
               

               
Conread position:
               
3-180
               

               
Cow position:
               
chr5:16206302-16206127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
17, 129
               

               
Conread position:
               
3-182
               

               
Cow position:
               
chr5:50950408-50950582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
19, 137
               

               
Conread position:
               
3-192
               

               
Cow position:
               
chr5:23856313-23856122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
8, 115
               

               
Conread position:
               
3-198
               

               
Cow position:
               
chr5:48757800-48757984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
17, 63
               

               
Conread position:
               
3-200
               

               
Cow position:
               
chr5:24485577-24485388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
3-201
               

               
Cow position:
               
chr5:66972281-66972476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
17, 134
               

               
Conread position:
               
3-203
               

               
Cow position:
               
chr5:23168970-23168777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
3-203
               

               
Cow position:
               
chr5:34115511-34115702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
182, 12
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chr5:5257439-5257237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
7, 54
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chr5:10261381-10261182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
17, 66
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chr5:16893918-16893720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
18, 83
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chr5:17999637-17999441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
55, 13
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chr5:21920225-21920432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
18, 151
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chr5:29980128-29979931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chr5:31144933-31144736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
15, 55
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chr5:42744641-42744837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
8, 116
               

               
Conread position:
               
3-206
               

               
Cow position:
               
chr5:50972384-50972582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
17, 108
               

               
Conread position:
               
3-208
               

               
Cow position:
               
chr5:23529419-23529226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
17, 40
               

               
Conread position:
               
3-208
               

               
Cow position:
               
chr5:39695507-39695706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
17, 80
               

               
Conread position:
               
3-209
               

               
Cow position:
               
chr5:29771372-29771583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
17, 71
               

               
Conread position:
               
3-209
               

               
Cow position:
               
chr5:35208119-35208319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
17, 59
               

               
Conread position:
               
3-211
               

               
Cow position:
               
chr5:29353273-29353068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
13, 30
               

               
Conread position:
               
3-211
               

               
Cow position:
               
chr5:34885302-34885106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
17, 83
               

               
Conread position:
               
3-211
               

               
Cow position:
               
chr5:36855061-36855263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
8, 23
               

               
Conread position:
               
3-211
               

               
Cow position:
               
chr5:54405038-54404833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
17, 31
               

               
Conread position:
               
3-211
               

               
Cow position:
               
chr5:55967025-55966823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
17, 137
               

               
Conread position:
               
3-211
               

               
Cow position:
               
chr5:57736963-57737156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
8, 82
               

               
Conread position:
               
3-211
               

               
Cow position:
               
chr5:65883922-65883715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
17, 130
               

               
Conread position:
               
3-212
               

               
Cow position:
               
chr5:39874979-39875182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
61, 17
               

               
Conread position:
               
3-221
               

               
Cow position:
               
chr5:32696967-32696754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
8, 47
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr5:21964140-21964359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
15, 8
               

               
Conread position:
               
4-132
               

               
Cow position:
               
chr5:47601674-47601803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
4-139
               

               
Cow position:
               
chr5:56518355-56518219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
4-140
               

               
Cow position:
               
chr5:32963775-32963639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
16, 58
               

               
Conread position:
               
4-152
               

               
Cow position:
               
chr5:31469730-31469578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
4-162
               

               
Cow position:
               
chr5:39094407-39094569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
4-169
               

               
Cow position:
               
chr5:48009992-48009828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
109, 13
               

               
Conread position:
               
4-179
               

               
Cow position:
               
chr5:6130207-6130379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
18, 143
               

               
Conread position:
               
4-180
               

               
Cow position:
               
chr5:43474702-43474871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
16, 148
               

               
Conread position:
               
4-180
               

               
Cow position:
               
chr5:50975747-50975928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
16, 164
               

               
Conread position:
               
4-192
               

               
Cow position:
               
chr5:8994711-8994527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
16, 64
               

               
Conread position:
               
4-192
               

               
Cow position:
               
chr5:17644801-17644616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
12, 144
               

               
Conread position:
               
4-192
               

               
Cow position:
               
chr5:40169332-40169150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
50, 106
               

               
Conread position:
               
4-200
               

               
Cow position:
               
chr5:17063236-17063040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
16, 160
               

               
Conread position:
               
4-200
               

               
Cow position:
               
chr5:37714043-37713848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
16, 155
               

               
Conread position:
               
4-203
               

               
Cow position:
               
chr5:26377812-26377620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
16, 57
               

               
Conread position:
               
4-203
               

               
Cow position:
               
chr5:69461189-69461382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
16, 101
               

               
Conread position:
               
4-204
               

               
Cow position:
               
chr5:33414554-33414358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
32, 12
               

               
Conread position:
               
4-204
               

               
Cow position:
               
chr5:42845746-42845543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
16, 162
               

               
Conread position:
               
4-204
               

               
Cow position:
               
chr5:47317115-47316924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
16, 26
               

               
Conread position:
               
4-204
               

               
Cow position:
               
chr5:54311187-54311386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
16, 145
               

               
Conread position:
               
4-204
               

               
Cow position:
               
chr5:58144749-58144551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
17, 132
               

               
Conread position:
               
4-205
               

               
Cow position:
               
chr5:1766489-1766298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
12, 70
               

               
Conread position:
               
4-205
               

               
Cow position:
               
chr5:12709740-12709940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
16, 139
               

               
Conread position:
               
4-205
               

               
Cow position:
               
chr5:18090578-18090789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
4-205
               

               
Cow position:
               
chr5:18574025-18574226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
15, 74
               

               
Conread position:
               
4-205
               

               
Cow position:
               
chr5:34638740-34638935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
4-205
               

               
Cow position:
               
chr5:47547863-47547671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
16, 139
               

               
Conread position:
               
4-205
               

               
Cow position:
               
chr5:55928797-55928995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
17, 69
               

               
Conread position:
               
4-205
               

               
Cow position:
               
chr5:64137106-64137307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
16, 144
               

               
Conread position:
               
4-205
               

               
Cow position:
               
chr5:65601315-65601508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
16, 104
               

               
Conread position:
               
4-209
               

               
Cow position:
               
chr5:62142525-62142731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
18, 83
               

               
Conread position:
               
4-211
               

               
Cow position:
               
chr5:2500334-2500122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
16, 164
               

               
Conread position:
               
4-211
               

               
Cow position:
               
chr5:3242619-3242420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
14, 24
               

               
Conread position:
               
4-211
               

               
Cow position:
               
chr5:3668756-3668955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
18, 101
               

               
Conread position:
               
4-211
               

               
Cow position:
               
chr5:14629958-14629753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
16, 126
               

               
Conread position:
               
4-211
               

               
Cow position:
               
chr5:28224307-28224510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
16, 139
               

               
Conread position:
               
4-211
               

               
Cow position:
               
chr5:28946203-28946003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
80, 16
               

               
Conread position:
               
4-211
               

               
Cow position:
               
chr5:30253596-30253798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
16, 137
               

               
Conread position:
               
4-211
               

               
Cow position:
               
chr5:32140853-32140651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
12, 92
               

               
Conread position:
               
4-211
               

               
Cow position:
               
chr5:32956241-32956037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
16, 146
               

               
Conread position:
               
4-211
               

               
Cow position:
               
chr5:34463730-34463521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
16, 159
               

               
Conread position:
               
4-211
               

               
Cow position:
               
chr5:56820407-56820204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
12, 136
               

               
Conread position:
               
4-211
               

               
Cow position:
               
chr5:58855958-58856160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
12, 140
               

               
Conread position:
               
4-211
               

               
Cow position:
               
chr5:66581818-66582018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
14, 131
               

               
Conread position:
               
4-211
               

               
Cow position:
               
chr5:71494672-71494878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
16, 103
               

               
Conread position:
               
4-214
               

               
Cow position:
               
chr5:14550727-14550524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
16, 128
               

               
Conread position:
               
4-221
               

               
Cow position:
               
chr5:30487093-30487310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
16, 30
               

               
Conread position:
               
4-221
               

               
Cow position:
               
chr5:64758912-64758699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
18, 26
               

               
Conread position:
               
5-203
               

               
Cow position:
               
chr5:53855550-53855749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
18, 145
               

               
Conread position:
               
5-205
               

               
Cow position:
               
chr5:47696583-47696390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
15, 25
               

               
Conread position:
               
5-205
               

               
Cow position:
               
chr5:63964313-63964118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
15, 116
               

               
Conread position:
               
6-205
               

               
Cow position:
               
chr5:45225968-45225762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
6-205
               

               
Cow position:
               
chr5:51801113-51800921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
14, 27
               

               
Conread position:
               
7-178
               

               
Cow position:
               
chr5:56433662-56433833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
13, 159
               

               
Conread position:
               
7-198
               

               
Cow position:
               
chr5:25447422-25447605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
13, 23
               

               
Conread position:
               
9-138
               

               
Cow position:
               
chr5:19294626-19294499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
11, 34
               

               
Conread position:
               
9-186
               

               
Cow position:
               
chr5:67932601-67932434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
10, 21
               

               
Conread position:
               
9-192
               

               
Cow position:
               
chr5:71579034-71579214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
12, 140
               

               
Conread position:
               
9-200
               

               
Cow position:
               
chr5:69731373-69731551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
11, 22
               

               
Conread position:
               
9-210
               

               
Cow position:
               
chr5:741083-740883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
34, 7
               

               
Conread position:
               
9-211
               

               
Cow position:
               
chr5:458344-458546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
52, 8
               

               
Conread position:
               
9-211
               

               
Cow position:
               
chr5:16214547-16214744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
11, 38
               

               
Conread position:
               
9-211
               

               
Cow position:
               
chr5:29827909-29828104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
10, 132
               

               
Conread position:
               
9-211
               

               
Cow position:
               
chr5:35247250-35247053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
11, 78
               

               
Conread position:
               
9-211
               

               
Cow position:
               
chr5:52645220-52645023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
7, 129
               

               
Conread position:
               
9-211
               

               
Cow position:
               
chr5:63987591-63987388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
11, 95
               

               
Conread position:
               
10-158
               

               
Cow position:
               
chr5:47313334-47313484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
11, 123
               

               
Conread position:
               
11-221
               

               
Cow position:
               
chr5:14473551-14473336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
45, 9
               

               
Conread position:
               
12-211
               

               
Cow position:
               
chr5:54768046-54767852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
46, 133
               

               
Conread position:
               
16-179
               

               
Cow position:
               
chr5:72150115-72150275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
16-221
               

               
Cow position:
               
chr5:33552540-33552355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
197, 26
               

               
Conread position:
               
17-140
               

               
Cow position:
               
chr5:57271399-57271273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
17-178
               

               
Cow position:
               
chr5:41486872-41486713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
44, 132
               

               
Conread position:
               
17-181
               

               
Cow position:
               
chr5:37377740-37377891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
40, 15
               

               
Conread position:
               
17-196
               

               
Cow position:
               
chr5:56334547-56334729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
45, 121
               

               
Conread position:
               
17-197
               

               
Cow position:
               
chr5:16184956-16185131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
17-200
               

               
Cow position:
               
chr5:50533518-50533338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
17-203
               

               
Cow position:
               
chr5:8024326-8024144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
17-205
               

               
Cow position:
               
chr5:21040107-21039927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
40, 106
               

               
Conread position:
               
17-205
               

               
Cow position:
               
chr5:34300785-34300970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
49, 42
               

               
Conread position:
               
17-205
               

               
Cow position:
               
chr5:51053779-51053604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
17-208
               

               
Cow position:
               
chr5:62826885-62826698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
17-210
               

               
Cow position:
               
chr5:63427137-63426949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
50, 25
               

               
Conread position:
               
17-210
               

               
Cow position:
               
chr5:67540334-67540145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
125, 95
               

               
Conread position:
               
17-210
               

               
Cow position:
               
chr5:72903363-72903176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
37, 118
               

               
Conread position:
               
17-211
               

               
Cow position:
               
chr5:5855744-5855915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
17-211
               

               
Cow position:
               
chr5:24348976-24349164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
45, 118
               

               
Conread position:
               
17-211
               

               
Cow position:
               
chr5:30844982-30845170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
17-211
               

               
Cow position:
               
chr5:34528430-34528608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
21, 67
               

               
Conread position:
               
17-211
               

               
Cow position:
               
chr5:35969411-35969589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
17-211
               

               
Cow position:
               
chr5:39447662-39447478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
20, 67
               

               
Conread position:
               
17-211
               

               
Cow position:
               
chr5:44752442-44752250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
134, 90
               

               
Conread position:
               
17-211
               

               
Cow position:
               
chr5:45273632-45273444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
49, 116
               

               
Conread position:
               
17-211
               

               
Cow position:
               
chr5:51935055-51935247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
40, 128
               

               
Conread position:
               
17-211
               

               
Cow position:
               
chr5:61840055-61840245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
38, 128
               

               
Conread position:
               
17-211
               

               
Cow position:
               
chr5:65588572-65588756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
17-221
               

               
Cow position:
               
chr5:4710276-4710084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
17-221
               

               
Cow position:
               
chr5:41713170-41713364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
14, 65
               

               
Conread position:
               
17-221
               

               
Cow position:
               
chr5:54350496-54350293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
43, 12
               

               
Conread position:
               
18-189
               

               
Cow position:
               
chr5:47721408-47721579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
51, 115
               

               
Conread position:
               
18-203
               

               
Cow position:
               
chr5:44446998-44446816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
154, 114
               

               
Conread position:
               
18-211
               

               
Cow position:
               
chr5:11668313-11668128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
48, 14
               

               
Conread position:
               
18-214
               

               
Cow position:
               
chr5:7140241-7140047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
39, 134
               

               
Conread position:
               
18-218
               

               
Cow position:
               
chr5:44994168-44993976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
19-139
               

               
Cow position:
               
chr5:7921529-7921409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
20-192
               

               
Cow position:
               
chr5:58490589-58490760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
43, 81
               

               
Conread position:
               
20-211
               

               
Cow position:
               
chr5:49474670-49474488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
90, 12
               

               
Conread position:
               
21-181
               

               
Cow position:
               
chr5:18289002-18289158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
45, 119
               

               
Conread position:
               
21-203
               

               
Cow position:
               
chr5:55756558-55756371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
38, 145
               

               
Conread position:
               
21-205
               

               
Cow position:
               
chr5:60747403-60747225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
22-205
               

               
Cow position:
               
chr5:19335913-19335730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
33, 126
               

               
Conread position:
               
22-211
               

               
Cow position:
               
chr5:56680121-56680308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
35, 110
               

               
Conread position:
               
23-211
               

               
Cow position:
               
chr5:6891143-6890963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
28-197
               

               
Cow position:
               
chr5:16179645-16179480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
35, 58
               

               
Conread position:
               
28-211
               

               
Cow position:
               
chr5:31918531-31918700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
30, 58
               

               
Conread position:
               
29-210
               

               
Cow position:
               
chr5:73080083-73080258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
29-211
               

               
Cow position:
               
chr5:26990273-26990447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
111, 132
               

               
Conread position:
               
30-211
               

               
Cow position:
               
chr5:58446685-58446864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
82, 121
               

               
Conread position:
               
32-211
               

               
Cow position:
               
chr5:18898863-18899033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
33-211
               

               
Cow position:
               
chr5:57768098-57767928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
33, 114
               

               
Conread position:
               
39-223
               

               
Cow position:
               
chr5:43371307-43371126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
21, 110
               

               
Conread position:
               
40-203
               

               
Cow position:
               
chr5:60448107-60448265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
26, 103
               

               
Conread position:
               
41-187
               

               
Cow position:
               
chr5:29895091-29895233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
122, 39
               

               
Conread position:
               
41-205
               

               
Cow position:
               
chr5:13717678-13717518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
24, 98
               

               
Conread position:
               
41-205
               

               
Cow position:
               
chr5:29212837-29212995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
41-211
               

               
Cow position:
               
chr5:23678811-23678642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
27, 100
               

               
Conread position:
               
43-192
               

               
Cow position:
               
chr5:56469931-56469784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
22, 108
               

               
Conread position:
               
43-205
               

               
Cow position:
               
chr5:35125949-35126106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
43-211
               

               
Cow position:
               
chr5:44796837-44796676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
18, 78
               

               
Conread position:
               
43-211
               

               
Cow position:
               
chr5:53946790-53946954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
57, 106
               

               
Conread position:
               
44-189
               

               
Cow position:
               
chr5:12557396-12557254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
104, 112
               

               
Conread position:
               
44-211
               

               
Cow position:
               
chr5:41164982-41165145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
51-189
               

               
Cow position:
               
chr5:29860250-29860386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
97, 110
               

               
Conread position:
               
51-211
               

               
Cow position:
               
chr5:3639583-3639430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
51-211
               

               
Cow position:
               
chr5:23357238-23357390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
48, 80
               

               
Conread position:
               
51-211
               

               
Cow position:
               
chr5:37808765-37808606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
112, 14
               

               
Conread position:
               
51-211
               

               
Cow position:
               
chr5:59873187-59873023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
100, 14
               

               
Conread position:
               
56-211
               

               
Cow position:
               
chr5:34192810-34192965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
86, 29
               

               
Conread position:
               
65-211
               

               
Cow position:
               
chr5:47323382-47323519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
65-212
               

               
Cow position:
               
chr5:50713854-50713706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
77, 97
               

               
Conread position:
               
78-211
               

               
Cow position:
               
chr5:67212286-67212418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
58, 84
               
Show alignments to all cow chromosomes.