Cow genome map

Conread name: Ss1.1-rpigcf0_006765.5

Conread position: 11-149
Cow position: chr10:63940808-63940946 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 111
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 60, 12

Conread position: 20-171
Cow position: chr10:48130054-48130212 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 122
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 44, 0

Conread position: 22-152
Cow position: chr10:31528009-31528145 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 52, 0

Conread position: 23-147
Cow position: chr10:59571942-59572065 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 107
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 51, 0

Conread position: 23-151
Cow position: chr10:49029692-49029825 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 109
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 53, 0

Conread position: 23-158
Cow position: chr10:34898007-34898140 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 106
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 41, 92

Conread position: 23-162
Cow position: chr10:1417635-1417779 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 119
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 60, 130

Conread position: 24-149
Cow position: chr10:46327732-46327865 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 107
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 57, 0

Conread position: 25-144
Cow position: chr10:52695684-52695557 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 102
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 52, 0

Conread position: 25-145
Cow position: chr10:7089389-7089511 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 103
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 52, 0

Conread position: 25-146
Cow position: chr10:2857089-2857219 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 107
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 57, 0

Conread position: 25-147
Cow position: chr10:7383571-7383444 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 106
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 51, 0

Conread position: 25-148
Cow position: chr10:10634261-10634386 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 103
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 54, 103

Conread position: 25-148
Cow position: chr10:31362171-31362045 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 99
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 25-148
Cow position: chr10:38205668-38205543 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 105
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 61, 31

Conread position: 25-149
Cow position: chr10:20553227-20553354 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 105
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 45, 98

Conread position: 25-149
Cow position: chr10:23576588-23576715 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 98
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 61, 0

Conread position: 25-150
Cow position: chr10:60697584-60697453 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 111
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 59, 31

Conread position: 25-151
Cow position: chr10:8404258-8404383 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 102
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 51, 37

Conread position: 25-151
Cow position: chr10:17065689-17065822 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 109
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 58, 20

Conread position: 25-151
Cow position: chr10:17149922-17150049 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 104
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 49, 73

Conread position: 25-151
Cow position: chr10:23056035-23055916 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 100
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 25-151
Cow position: chr10:24971284-24971154 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 105
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 48, 0

Conread position: 25-151
Cow position: chr10:31027600-31027464 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 109
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 47, 0

Conread position: 25-151
Cow position: chr10:34655066-34654934 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 105
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 44, 0

Conread position: 25-151
Cow position: chr10:37415832-37415959 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 99
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 74, 0

Conread position: 25-151
Cow position: chr10:49862509-49862640 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 107
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 48, 0

Conread position: 25-151
Cow position: chr10:51289292-51289421 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 101
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 51, 0

Conread position: 25-151
Cow position: chr10:51944404-51944535 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 104
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 37, 0

Conread position: 25-151
Cow position: chr10:59417193-59417061 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 106
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 44, 0

Conread position: 25-151
Cow position: chr10:60237053-60236923 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 103
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 51, 43

Conread position: 25-152
Cow position: chr10:25475575-25475710 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 111
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 59, 0

Conread position: 25-152
Cow position: chr10:45624114-45623998 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 103
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 43, 0

Conread position: 25-153
Cow position: chr10:9576006-9575867 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 110
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 54, 0

Conread position: 25-153
Cow position: chr10:32080314-32080447 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 52, 0

Conread position: 25-155
Cow position: chr10:19191796-19191934 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 108
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 60, 0

Conread position: 25-156
Cow position: chr10:37708974-37708843 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 103
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 121, 49

Conread position: 25-161
Cow position: chr10:10104823-10104967 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 119
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 44, 0

Conread position: 25-161
Cow position: chr10:23346261-23346119 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 115
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 48, 0

Conread position: 25-161
Cow position: chr10:26103095-26102964 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 110
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 51, 43

Conread position: 25-161
Cow position: chr10:60240177-60240036 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 113
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 48, 121

Conread position: 25-161
Cow position: chr10:61922101-61921955 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 113
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 25-163
Cow position: chr10:37529223-37529086 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 115
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 128, 0

Conread position: 25-164
Cow position: chr10:47429868-47430015 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 118
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 37, 0

Conread position: 25-165
Cow position: chr10:6384573-6384715 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 118
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 51, 124

Conread position: 25-165
Cow position: chr10:34646404-34646267 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 116
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 43, 99

Conread position: 25-167
Cow position: chr10:21348946-21348802 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 34, 96

Conread position: 25-167
Cow position: chr10:40998900-40999051 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 120
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 60, 0

Conread position: 25-168
Cow position: chr10:14947297-14947448 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 121
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 56, 31

Conread position: 25-168
Cow position: chr10:34661283-34661139 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 119
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 54, 98

Conread position: 25-169
Cow position: chr10:6242471-6242331 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 115
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 60, 95

Conread position: 25-169
Cow position: chr10:57095158-57095010 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 118
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 56, 20

Conread position: 25-171
Cow position: chr10:2613409-2613561 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 120
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 42, 130

Conread position: 25-171
Cow position: chr10:60446775-60446927 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 119
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 39, 31

Conread position: 25-173
Cow position: chr10:49571250-49571401 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 117
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 47, 7

Conread position: 25-175
Cow position: chr10:37426091-37425939 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 121
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 45, 98

Conread position: 25-184
Cow position: chr10:6852305-6852466 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 129
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 42, 124

Conread position: 25-202
Cow position: chr10:32440242-32440423 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 140
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 60, 138

Conread position: 26-150
Cow position: chr10:22390640-22390773 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 110
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 54, 0

Conread position: 26-161
Cow position: chr10:26607572-26607432 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 115
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 59, 126

Conread position: 26-162
Cow position: chr10:53903537-53903400 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 106
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 64, 13

Conread position: 28-148
Cow position: chr10:47712549-47712662 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 101
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 29-165
Cow position: chr10:1054440-1054579 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 108
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 50, 92

Conread position: 30-216
Cow position: chr10:8093270-8093075 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 141
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 44, 0

Conread position: 31-143
Cow position: chr10:56828269-56828150 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 101
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 36, 0

Conread position: 31-147
Cow position: chr10:30224731-30224844 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 97
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 25, 0

Conread position: 31-149
Cow position: chr10:443629-443747 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 31-149
Cow position: chr10:25822195-25822079 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 101
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 37, 0

Conread position: 31-151
Cow position: chr10:33694423-33694545 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 107
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 51, 0

Conread position: 31-151
Cow position: chr10:35108626-35108743 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 95
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 23, 0

Conread position: 31-151
Cow position: chr10:45623734-45623612 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 48, 0

Conread position: 31-151
Cow position: chr10:50558876-50558753 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 101
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 68, 0

Conread position: 31-161
Cow position: chr10:1978623-1978484 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 113
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 49, 0

Conread position: 31-161
Cow position: chr10:2704245-2704371 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 102
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 54, 0

Conread position: 31-161
Cow position: chr10:37508101-37507964 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 108
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 55, 0

Conread position: 31-161
Cow position: chr10:62353507-62353644 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 111
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 29, 0

Conread position: 31-164
Cow position: chr10:54948087-54947954 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 102
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 31-165
Cow position: chr10:45371104-45371249 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 116
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 49, 0

Conread position: 31-167
Cow position: chr10:34903524-34903667 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 115
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 54, 0

Conread position: 31-176
Cow position: chr10:1996622-1996473 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 115
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 45, 128

Conread position: 31-176
Cow position: chr10:37235497-37235349 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 113
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 44, 126

Conread position: 31-176
Cow position: chr10:61509895-61509745 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 124
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 41, 0

Conread position: 31-177
Cow position: chr10:61039168-61039323 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 117
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 29, 0

Conread position: 31-178
Cow position: chr10:35731479-35731325 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 121
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 43, 146

Conread position: 31-192
Cow position: chr10:3276021-3276185 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 130
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 52, 126

Conread position: 31-199
Cow position: chr10:58451326-58451159 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 130
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 45, 94

Conread position: 31-201
Cow position: chr10:43460005-43459829 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 136
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 53, 139

Conread position: 31-204
Cow position: chr10:15817746-15817569 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 135
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 43, 95

Conread position: 31-214
Cow position: chr10:5784206-5784013 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 144
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 48, 12

Conread position: 32-153
Cow position: chr10:48178396-48178518 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 98
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 41, 84

Conread position: 33-149
Cow position: chr10:33551405-33551521 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 98
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 33-151
Cow position: chr10:51544381-51544498 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 102
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 52, 68

Conread position: 33-155
Cow position: chr10:55733557-55733429 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 106
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 48, 0

Conread position: 33-161
Cow position: chr10:25142487-25142349 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 47, 0

Conread position: 33-172
Cow position: chr10:18751425-18751278 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 52, 0

Conread position: 33-188
Cow position: chr10:41676360-41676203 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 123
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 53, 144

Conread position: 35-148
Cow position: chr10:57786391-57786510 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 99
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 35, 0

Conread position: 40-149
Cow position: chr10:30352910-30353025 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 96
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 34, 0

Conread position: 41-152
Cow position: chr10:16641871-16641752 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 99
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 43, 0

Conread position: 42-157
Cow position: chr10:38995302-38995419 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 95
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 32, 0

Show alignments to all cow chromosomes.