Cow genome map

Conread name: Ss1.1-rpigcf0_006765.5

Conread position: 21-155
Cow position: chr11:32787153-32787018 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 106
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 49, 0

Conread position: 22-158
Cow position: chr11:49568186-49568044 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 116
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 48, 118

Conread position: 23-149
Cow position: chr11:33824859-33824731 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 104
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 51, 33

Conread position: 23-150
Cow position: chr11:58669129-58669254 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 101
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 49, 12

Conread position: 23-151
Cow position: chr11:4411822-4411688 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 108
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 50, 119

Conread position: 23-151
Cow position: chr11:18484142-18484016 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 101
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 45, 0

Conread position: 23-152
Cow position: chr11:28078540-28078675 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 104
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 60, 0

Conread position: 23-152
Cow position: chr11:83032727-83032863 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 110
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 43, 0

Conread position: 23-164
Cow position: chr11:36182741-36182889 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 115
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 49, 92

Conread position: 23-165
Cow position: chr11:39060555-39060406 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 117
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 58, 16

Conread position: 25-137
Cow position: chr11:42296571-42296456 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 93
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 71, 0

Conread position: 25-145
Cow position: chr11:51729335-51729453 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 102
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 60, 0

Conread position: 25-149
Cow position: chr11:41228-41353 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 97
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 60, 0

Conread position: 25-149
Cow position: chr11:1842012-1842140 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 99
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 51, 0

Conread position: 25-149
Cow position: chr11:13684662-13684538 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 97
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 25-149
Cow position: chr11:23407513-23407643 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 104
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 60, 0

Conread position: 25-149
Cow position: chr11:25721948-25721822 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 105
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 47, 95

Conread position: 25-149
Cow position: chr11:32587075-32586943 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 107
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 48, 0

Conread position: 25-149
Cow position: chr11:62789179-62789310 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 108
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 50, 0

Conread position: 25-149
Cow position: chr11:74839659-74839786 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 104
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 55, 99

Conread position: 25-150
Cow position: chr11:30172353-30172483 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 106
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 48, 0

Conread position: 25-150
Cow position: chr11:57170550-57170426 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 99
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 51, 0

Conread position: 25-151
Cow position: chr11:2937615-2937487 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 98
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 61, 0

Conread position: 25-151
Cow position: chr11:15591426-15591295 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 108
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 49, 0

Conread position: 25-151
Cow position: chr11:20238725-20238861 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 109
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 44, 0

Conread position: 25-151
Cow position: chr11:49057440-49057568 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 102
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 61, 0

Conread position: 25-151
Cow position: chr11:63977106-63977240 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 106
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 60, 0

Conread position: 25-152
Cow position: chr11:27746972-27747104 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 108
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 54, 0

Conread position: 25-153
Cow position: chr11:22884461-22884592 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 105
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 49, 122

Conread position: 25-157
Cow position: chr11:51196034-51195906 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 102
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 60, 0

Conread position: 25-158
Cow position: chr11:81928459-81928320 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 110
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 47, 25

Conread position: 25-161
Cow position: chr11:42206470-42206611 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 113
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 43, 101

Conread position: 25-161
Cow position: chr11:62483913-62483779 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 107
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 48, 0

Conread position: 25-162
Cow position: chr11:19500743-19500608 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 105
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 59, 0

Conread position: 25-162
Cow position: chr11:20205803-20205662 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 112
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 67, 0

Conread position: 25-165
Cow position: chr11:18698928-18699069 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 51, 0

Conread position: 25-165
Cow position: chr11:27248539-27248686 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 117
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 54, 129

Conread position: 25-165
Cow position: chr11:63478421-63478559 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 118
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 128, 0

Conread position: 25-167
Cow position: chr11:15285566-15285423 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 107
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 71, 0

Conread position: 25-167
Cow position: chr11:18447443-18447301 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 115
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 51, 129

Conread position: 25-167
Cow position: chr11:18915075-18915211 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 114
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 43, 0

Conread position: 25-167
Cow position: chr11:47899317-47899450 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 115
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 43, 0

Conread position: 25-167
Cow position: chr11:48296079-48296224 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 114
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 71, 127

Conread position: 25-168
Cow position: chr11:25119883-25119733 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 118
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 47, 31

Conread position: 25-168
Cow position: chr11:55494728-55494866 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 44, 0

Conread position: 25-172
Cow position: chr11:52297172-52297017 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 124
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 44, 139

Conread position: 25-172
Cow position: chr11:56114989-56115143 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 124
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 46, 0

Conread position: 25-174
Cow position: chr11:62663186-62663038 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 115
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 59, 96

Conread position: 25-175
Cow position: chr11:2917537-2917383 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 61, 19

Conread position: 25-178
Cow position: chr11:58185931-58186085 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 145, 0

Conread position: 25-186
Cow position: chr11:63866611-63866442 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 131
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 21, 153

Conread position: 25-187
Cow position: chr11:44032060-44032227 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 133
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 54, 101

Conread position: 25-194
Cow position: chr11:65431567-65431742 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 133
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 47, 137

Conread position: 25-194
Cow position: chr11:81340492-81340316 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 136
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 45, 166

Conread position: 25-195
Cow position: chr11:3267607-3267443 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 123
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 29, 0

Conread position: 25-205
Cow position: chr11:66104341-66104150 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 139
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 5, 0

Conread position: 25-206
Cow position: chr11:42066913-42067104 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 140
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 48, 182

Conread position: 26-145
Cow position: chr11:45671320-45671201 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 94
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 26-151
Cow position: chr11:62239794-62239926 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 105
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 63, 0

Conread position: 26-151
Cow position: chr11:83043313-83043182 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 107
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 55, 0

Conread position: 26-160
Cow position: chr11:62812900-62812758 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 112
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 53, 102

Conread position: 26-161
Cow position: chr11:63165597-63165456 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 114
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 53, 0

Conread position: 26-165
Cow position: chr11:30986688-30986835 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 117
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 56, 0

Conread position: 26-166
Cow position: chr11:80819955-80819822 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 113
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 125, 42

Conread position: 26-167
Cow position: chr11:48315347-48315199 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 116
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 56, 135

Conread position: 26-169
Cow position: chr11:12768448-12768601 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 117
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 31-151
Cow position: chr11:40818572-40818448 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 104
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 45, 112

Conread position: 31-151
Cow position: chr11:46922831-46922702 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 106
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 27, 0

Conread position: 31-151
Cow position: chr11:67614867-67614740 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 106
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 53, 37

Conread position: 31-156
Cow position: chr11:21728226-21728099 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 103
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 38, 100

Conread position: 31-160
Cow position: chr11:8422063-8421931 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 106
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 45, 0

Conread position: 31-161
Cow position: chr11:63483997-63484136 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 112
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 54, 0

Conread position: 31-164
Cow position: chr11:71390511-71390378 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 110
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 50, 116

Conread position: 31-165
Cow position: chr11:4621376-4621238 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 110
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 50, 122

Conread position: 31-176
Cow position: chr11:25209450-25209603 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 122
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 45, 90

Conread position: 31-187
Cow position: chr11:48247007-48246857 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 121
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 121, 37

Conread position: 32-165
Cow position: chr11:46978340-46978203 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 113
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 44, 22

Conread position: 33-160
Cow position: chr11:54872702-54872567 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 47, 0

Conread position: 33-165
Cow position: chr11:65565070-65564942 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 107
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 40, 0

Conread position: 34-162
Cow position: chr11:22583018-22583147 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 27, 94

Conread position: 36-151
Cow position: chr11:20093713-20093831 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 101
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 63, 25

Conread position: 36-151
Cow position: chr11:73076355-73076237 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 100
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 36, 0

Conread position: 41-149
Cow position: chr11:80823974-80824086 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 96
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 44, 0

Conread position: 43-149
Cow position: chr11:6638932-6638820 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 94
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 30, 0

Conread position: 45-183
Cow position: chr11:71146402-71146543 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 113
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 40, 17

Conread position: 55-191
Cow position: chr11:4422265-4422404 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 107
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 22, 125

Conread position: 75-172
Cow position: chr11:72406038-72405942 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 83
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 88, 0

Show alignments to all cow chromosomes.