Cow genome map
| Conread name: | Ss1.1-rpigcf0_006765.5 |
| Conread position: | 17-151 |
| Cow position: | chr12:4594526-4594662 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 79, 35 |
| Conread position: | 18-165 |
| Cow position: | chr12:25561390-25561543 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 19-162 |
| Cow position: | chr12:41350860-41350723 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 22-167 |
| Cow position: | chr12:17252174-17252027 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 63, 130 |
| Conread position: | 23-150 |
| Cow position: | chr12:24273331-24273210 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 23-161 |
| Cow position: | chr12:4512424-4512277 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 23-161 |
| Cow position: | chr12:18123695-18123839 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 23-163 |
| Cow position: | chr12:48578869-48579011 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 59, 39 |
| Conread position: | 24-149 |
| Cow position: | chr12:2734881-2734750 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 25-130 |
| Cow position: | chr12:17622391-17622284 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 90 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 25-137 |
| Cow position: | chr12:15122354-15122474 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 25-137 |
| Cow position: | chr12:30194729-30194842 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 51, 97 |
| Conread position: | 25-146 |
| Cow position: | chr12:33948932-33949058 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 49, 103 |
| Conread position: | 25-149 |
| Cow position: | chr12:40309347-40309473 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 25-150 |
| Cow position: | chr12:34161441-34161565 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 70, 50 |
| Conread position: | 25-151 |
| Cow position: | chr12:6666598-6666724 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 97 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-151 |
| Cow position: | chr12:30210511-30210633 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 25-151 |
| Cow position: | chr12:36544613-36544481 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 107 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 58, 25 |
| Conread position: | 25-152 |
| Cow position: | chr12:30805886-30806017 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 25-161 |
| Cow position: | chr12:7884653-7884507 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 25-161 |
| Cow position: | chr12:19272661-19272517 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 25-161 |
| Cow position: | chr12:29316434-29316288 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 25-162 |
| Cow position: | chr12:17879274-17879132 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 49, 128 |
| Conread position: | 25-164 |
| Cow position: | chr12:15151841-15151701 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 56, 99 |
| Conread position: | 25-164 |
| Cow position: | chr12:18582965-18582824 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 47, 99 |
| Conread position: | 25-164 |
| Cow position: | chr12:45092474-45092617 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 25-165 |
| Cow position: | chr12:7902771-7902627 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 60, 37 |
| Conread position: | 25-167 |
| Cow position: | chr12:26217796-26217649 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 51, 92 |
| Conread position: | 25-169 |
| Cow position: | chr12:25528532-25528381 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 51, 106 |
| Conread position: | 25-171 |
| Cow position: | chr12:2964075-2964230 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 25-172 |
| Cow position: | chr12:19261223-19261376 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 65, 135 |
| Conread position: | 25-176 |
| Cow position: | chr12:1333259-1333403 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 25-176 |
| Cow position: | chr12:15089543-15089704 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 44, 155 |
| Conread position: | 25-205 |
| Cow position: | chr12:1952774-1952587 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 44, 151 |
| Conread position: | 26-143 |
| Cow position: | chr12:24116334-24116218 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 26-151 |
| Cow position: | chr12:33129283-33129417 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 26-162 |
| Cow position: | chr12:17031643-17031781 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 39, 131 |
| Conread position: | 26-167 |
| Cow position: | chr12:24032525-24032664 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 42, 102 |
| Conread position: | 26-191 |
| Cow position: | chr12:9766848-9766674 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 55, 100 |
| Conread position: | 26-191 |
| Cow position: | chr12:18513888-18513725 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 28-204 |
| Cow position: | chr12:29131628-29131801 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 34, 15 |
| Conread position: | 30-160 |
| Cow position: | chr12:18577873-18577999 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 31-136 |
| Cow position: | chr12:6484171-6484276 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 85 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 31-145 |
| Cow position: | chr12:45126812-45126703 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 31-149 |
| Cow position: | chr12:23714709-23714833 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 31-149 |
| Cow position: | chr12:29731348-29731472 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 31-149 |
| Cow position: | chr12:44822326-44822443 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 93 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 31-151 |
| Cow position: | chr12:2835437-2835568 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 31-151 |
| Cow position: | chr12:20776891-20776766 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 31-152 |
| Cow position: | chr12:5554300-5554173 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 31-152 |
| Cow position: | chr12:18532880-18532999 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 42, 8 |
| Conread position: | 31-164 |
| Cow position: | chr12:29180709-29180850 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 31-165 |
| Cow position: | chr12:17254176-17254318 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 18, 124 |
| Conread position: | 31-165 |
| Cow position: | chr12:38679083-38679226 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 31-197 |
| Cow position: | chr12:20439223-20439045 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 32-147 |
| Cow position: | chr12:3579519-3579643 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 32-161 |
| Cow position: | chr12:39465614-39465735 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 33-171 |
| Cow position: | chr12:25805096-25804963 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 33-173 |
| Cow position: | chr12:40881880-40881740 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 55, 23 |
| Conread position: | 55-165 |
| Cow position: | chr12:22047990-22048101 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 76-161 |
| Cow position: | chr12:9791191-9791104 (view UCSC Genome Browser custom track) |
| Alignm length: | 88 |
| Alignm identity: | 78 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 74, 0 |
Show alignments to all cow chromosomes.