Cow genome map

Conread name: Ss1.1-rpigcf0_006765.5

Conread position: 9-150
Cow position: chr13:20820902-20821051 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 115
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 74, 0

Conread position: 22-161
Cow position: chr13:15288999-15289143 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 115
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 63, 131

Conread position: 23-149
Cow position: chr13:6980841-6980712 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 100
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 34, 0

Conread position: 23-150
Cow position: chr13:34261152-34261021 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 104
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 65, 0

Conread position: 23-151
Cow position: chr13:8232659-8232784 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 99
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 15, 0

Conread position: 23-151
Cow position: chr13:14782263-14782133 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 106
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 53, 94

Conread position: 23-151
Cow position: chr13:24715162-24715034 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 101
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 23-151
Cow position: chr13:38035759-38035624 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 108
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 46, 0

Conread position: 23-151
Cow position: chr13:41155145-41155270 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 99
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 53, 0

Conread position: 23-152
Cow position: chr13:21981053-21981186 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 108
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 55, 15

Conread position: 23-167
Cow position: chr13:151884-151739 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 116
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 50, 103

Conread position: 23-170
Cow position: chr13:52477725-52477878 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 125
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 60, 137

Conread position: 24-145
Cow position: chr13:20624885-20624766 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 58, 0

Conread position: 25-145
Cow position: chr13:13320716-13320588 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 104
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 41, 0

Conread position: 25-145
Cow position: chr13:24585966-24585839 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 100
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 25-147
Cow position: chr13:20784509-20784383 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 107
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 61, 0

Conread position: 25-148
Cow position: chr13:8374853-8374973 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 99
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 25-148
Cow position: chr13:11565756-11565627 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 102
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 59, 0

Conread position: 25-148
Cow position: chr13:21171653-21171784 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 105
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 60, 0

Conread position: 25-149
Cow position: chr13:13265480-13265351 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 102
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 60, 40

Conread position: 25-149
Cow position: chr13:21277548-21277670 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 103
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 43, 0

Conread position: 25-149
Cow position: chr13:23478821-23478687 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 107
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 52, 0

Conread position: 25-149
Cow position: chr13:38329535-38329405 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 103
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 45, 0

Conread position: 25-149
Cow position: chr13:52913792-52913663 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 102
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 49, 0

Conread position: 25-150
Cow position: chr13:22085827-22085946 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 100
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 25-151
Cow position: chr13:9975157-9975283 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 95
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 25-151
Cow position: chr13:17569182-17569312 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 104
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 39, 98

Conread position: 25-151
Cow position: chr13:17821351-17821474 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 103
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 120, 43

Conread position: 25-151
Cow position: chr13:21170445-21170313 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 106
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 60, 0

Conread position: 25-151
Cow position: chr13:25561539-25561415 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 99
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 91, 0

Conread position: 25-151
Cow position: chr13:25817446-25817314 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 107
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 57, 0

Conread position: 25-151
Cow position: chr13:34281598-34281466 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 103
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 44, 0

Conread position: 25-155
Cow position: chr13:47651497-47651635 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 111
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 41, 0

Conread position: 25-160
Cow position: chr13:17815157-17815018 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 113
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 74, 29

Conread position: 25-161
Cow position: chr13:17745167-17745032 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 114
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 51, 43

Conread position: 25-161
Cow position: chr13:53619923-53619775 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 118
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 59, 0

Conread position: 25-161
Cow position: chr13:55713517-55713651 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 105
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 126, 61

Conread position: 25-161
Cow position: chr13:57323065-57322924 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 112
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 46, 0

Conread position: 25-161
Cow position: chr13:57770067-57770207 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 113
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 49, 127

Conread position: 25-164
Cow position: chr13:21242165-21242302 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 118
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 122, 0

Conread position: 25-165
Cow position: chr13:84497-84360 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 113
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 38, 60

Conread position: 25-165
Cow position: chr13:19279014-19278867 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 116
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 47, 90

Conread position: 25-167
Cow position: chr13:6189681-6189831 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 116
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 63, 0

Conread position: 25-167
Cow position: chr13:54582793-54582644 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 118
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 54, 146

Conread position: 25-168
Cow position: chr13:55494607-55494754 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 118
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 48, 96

Conread position: 25-169
Cow position: chr13:23399685-23399538 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 124
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 60, 129

Conread position: 25-170
Cow position: chr13:17021806-17021960 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 119
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 47, 0

Conread position: 25-170
Cow position: chr13:18058331-18058481 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 122
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 36, 0

Conread position: 25-176
Cow position: chr13:37554954-37555110 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 130
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 60, 144

Conread position: 25-178
Cow position: chr13:25924303-25924470 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 127
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 43, 153

Conread position: 25-187
Cow position: chr13:45073995-45074154 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 120
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 48, 0

Conread position: 25-188
Cow position: chr13:45073335-45073494 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 128
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 50, 96

Conread position: 25-194
Cow position: chr13:14644970-14644793 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 134
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 58, 128

Conread position: 26-150
Cow position: chr13:6079494-6079617 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 97
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 52, 0

Conread position: 26-151
Cow position: chr13:16020769-16020644 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 95
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 26-156
Cow position: chr13:21288167-21288305 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 113
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 43, 0

Conread position: 26-161
Cow position: chr13:17089602-17089738 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 106
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 54, 30

Conread position: 26-167
Cow position: chr13:10758047-10757907 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 112
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 122, 50

Conread position: 26-167
Cow position: chr13:23823116-23823262 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 116
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 46, 11

Conread position: 26-201
Cow position: chr13:12989768-12989593 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 128
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 120, 51

Conread position: 27-158
Cow position: chr13:36876977-36876843 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 55, 35

Conread position: 27-192
Cow position: chr13:16106331-16106167 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 50, 121

Conread position: 30-159
Cow position: chr13:30809459-30809599 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 114
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 50, 0

Conread position: 31-144
Cow position: chr13:35557198-35557319 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 100
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 54, 0

Conread position: 31-149
Cow position: chr13:13088942-13088819 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 100
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 55, 31

Conread position: 31-149
Cow position: chr13:18851996-18851875 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 95
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 31-149
Cow position: chr13:20473769-20473888 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 96
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 37, 47

Conread position: 31-151
Cow position: chr13:8450243-8450118 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 99
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 43, 0

Conread position: 31-151
Cow position: chr13:14063608-14063736 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 110
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 34, 0

Conread position: 31-151
Cow position: chr13:19883123-19883249 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 102
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 54, 0

Conread position: 31-151
Cow position: chr13:20288251-20288123 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 103
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 54, 0

Conread position: 31-151
Cow position: chr13:20864083-20864198 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 98
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 43, 0

Conread position: 31-151
Cow position: chr13:34299946-34300063 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 97
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 45, 0

Conread position: 31-151
Cow position: chr13:42200532-42200405 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 106
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 52, 0

Conread position: 31-151
Cow position: chr13:56686347-56686228 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 95
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 43, 94

Conread position: 31-151
Cow position: chr13:57986025-57986149 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 43, 0

Conread position: 31-152
Cow position: chr13:15194822-15194937 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 101
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 38, 0

Conread position: 31-160
Cow position: chr13:58763705-58763833 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 105
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 31, 0

Conread position: 31-161
Cow position: chr13:6012813-6012945 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 104
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 52, 89

Conread position: 31-161
Cow position: chr13:21188281-21188157 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 101
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 59, 0

Conread position: 31-162
Cow position: chr13:41979227-41979365 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 108
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 55, 0

Conread position: 31-164
Cow position: chr13:37614283-37614428 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 117
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 38, 0

Conread position: 31-164
Cow position: chr13:62260425-62260291 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 103
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 130, 0

Conread position: 31-165
Cow position: chr13:41549893-41550033 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 46, 0

Conread position: 31-165
Cow position: chr13:48165833-48165969 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 114
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 53, 90

Conread position: 31-169
Cow position: chr13:9612982-9612843 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 115
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 42, 68

Conread position: 31-169
Cow position: chr13:37405624-37405479 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 122
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 52, 79

Conread position: 31-180
Cow position: chr13:33601322-33601474 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 117
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 38, 60

Conread position: 31-200
Cow position: chr13:47538247-47538416 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 127
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 37, 66

Conread position: 32-151
Cow position: chr13:25062088-25061968 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 102
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 37, 95

Conread position: 33-151
Cow position: chr13:22601782-22601901 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 93
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 33-165
Cow position: chr13:22345363-22345504 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 114
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 48, 0

Conread position: 33-202
Cow position: chr13:23795475-23795649 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 136
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 44, 0

Conread position: 39-152
Cow position: chr13:45439436-45439316 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 99
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 35, 0

Conread position: 45-161
Cow position: chr13:15529350-15529470 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 97
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 41, 0

Conread position: 49-198
Cow position: chr13:20881033-20881185 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 112
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 25, 0

Conread position: 57-204
Cow position: chr13:38541824-38541681 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 90, 0

Conread position: 59-152
Cow position: chr13:24759470-24759561 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 80
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 25, 0

Conread position: 70-166
Cow position: chr13:11382164-11382260 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 83
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 76, 6

Conread position: 74-203
Cow position: chr13:19223511-19223384 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 100
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 10, 0

Show alignments to all cow chromosomes.