Cow genome map
| Conread name: | Ss1.1-rpigcf0_006765.5 |
| Conread position: | 23-150 |
| Cow position: | chr15:51558427-51558293 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 23-151 |
| Cow position: | chr15:26849512-26849644 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 23-161 |
| Cow position: | chr15:9128646-9128792 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 58, 78 |
| Conread position: | 23-175 |
| Cow position: | chr15:26442240-26442078 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 23-176 |
| Cow position: | chr15:47920125-47920284 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 25-136 |
| Cow position: | chr15:27063498-27063614 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 49, 105 |
| Conread position: | 25-145 |
| Cow position: | chr15:3695656-3695531 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 61, 37 |
| Conread position: | 25-147 |
| Cow position: | chr15:5710425-5710304 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 25-149 |
| Cow position: | chr15:14988013-14987885 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 25-149 |
| Cow position: | chr15:49784262-49784391 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 25-150 |
| Cow position: | chr15:848666-848536 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 54, 101 |
| Conread position: | 25-150 |
| Cow position: | chr15:14576351-14576219 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 49, 102 |
| Conread position: | 25-151 |
| Cow position: | chr15:22531690-22531561 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 47, 31 |
| Conread position: | 25-151 |
| Cow position: | chr15:28099135-28098999 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 41, 105 |
| Conread position: | 25-151 |
| Cow position: | chr15:38827301-38827427 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-151 |
| Cow position: | chr15:46563461-46563589 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 51, 37 |
| Conread position: | 25-152 |
| Cow position: | chr15:11908923-11909060 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 25-155 |
| Cow position: | chr15:48819066-48818937 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 51, 31 |
| Conread position: | 25-161 |
| Cow position: | chr15:2931544-2931693 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 25-162 |
| Cow position: | chr15:840125-840270 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 25-163 |
| Cow position: | chr15:26851207-26851347 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 49, 125 |
| Conread position: | 25-165 |
| Cow position: | chr15:53005916-53006062 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 51, 113 |
| Conread position: | 25-167 |
| Cow position: | chr15:31495200-31495344 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 52, 126 |
| Conread position: | 25-171 |
| Cow position: | chr15:20566938-20566785 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 25-173 |
| Cow position: | chr15:40000944-40000792 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 60, 50 |
| Conread position: | 25-176 |
| Cow position: | chr15:27975848-27976010 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 61, 125 |
| Conread position: | 25-202 |
| Cow position: | chr15:41475807-41475989 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 17, 12 |
| Conread position: | 26-145 |
| Cow position: | chr15:20047608-20047496 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 26-150 |
| Cow position: | chr15:1722828-1722952 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 26-151 |
| Cow position: | chr15:10199352-10199221 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 49, 28 |
| Conread position: | 28-167 |
| Cow position: | chr15:16492475-16492325 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 30-161 |
| Cow position: | chr15:44051464-44051603 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 31-143 |
| Cow position: | chr15:25906924-25906813 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 108, 37 |
| Conread position: | 31-145 |
| Cow position: | chr15:38103854-38103961 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 95 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 31-149 |
| Cow position: | chr15:14969530-14969408 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 31-149 |
| Cow position: | chr15:36846167-36846297 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 31-150 |
| Cow position: | chr15:49421977-49422093 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 31-151 |
| Cow position: | chr15:16822956-16822837 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 114, 93 |
| Conread position: | 31-151 |
| Cow position: | chr15:36952185-36952311 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 105 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 39, 96 |
| Conread position: | 31-152 |
| Cow position: | chr15:795004-795130 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 31-161 |
| Cow position: | chr15:47773475-47773603 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 115, 49 |
| Conread position: | 31-164 |
| Cow position: | chr15:13513549-13513408 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 52, 42 |
| Conread position: | 31-166 |
| Cow position: | chr15:30981957-30981826 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 132, 44 |
| Conread position: | 31-167 |
| Cow position: | chr15:19002263-19002413 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 31-167 |
| Cow position: | chr15:24967811-24967678 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 55, 118 |
| Conread position: | 31-169 |
| Cow position: | chr15:47844076-47844215 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 54, 99 |
| Conread position: | 32-151 |
| Cow position: | chr15:18703919-18704045 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 33-150 |
| Cow position: | chr15:36887852-36887728 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 40, 29 |
| Conread position: | 34-152 |
| Cow position: | chr15:1500842-1500717 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 34-152 |
| Cow position: | chr15:1508368-1508243 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 34-192 |
| Cow position: | chr15:141045-141207 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 16, 125 |
| Conread position: | 35-151 |
| Cow position: | chr15:15025169-15025056 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 42-152 |
| Cow position: | chr15:23085374-23085260 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 95 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 75-174 |
| Cow position: | chr15:10737816-10737914 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 85 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 161-334 |
| Cow position: | chr15:37697077-37696891 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 41, 0 |
Show alignments to all cow chromosomes.