Cow genome map
| Conread name: | Ss1.1-rpigcf0_006765.5 |
| Conread position: | 10-167 |
| Cow position: | chr16:13306811-13306653 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 21, 77 |
| Conread position: | 11-161 |
| Cow position: | chr16:7727981-7727828 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 20, 60 |
| Conread position: | 18-148 |
| Cow position: | chr16:24054952-24055084 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 22-149 |
| Cow position: | chr16:11660397-11660270 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 60, 40 |
| Conread position: | 23-151 |
| Cow position: | chr16:23681427-23681563 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 23-152 |
| Cow position: | chr16:4062716-4062584 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 23-156 |
| Cow position: | chr16:11083063-11083203 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 50, 8 |
| Conread position: | 23-159 |
| Cow position: | chr16:25839685-25839822 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 23-168 |
| Cow position: | chr16:16597622-16597777 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 44, 135 |
| Conread position: | 23-168 |
| Cow position: | chr16:33135002-33135148 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 125, 75 |
| Conread position: | 23-170 |
| Cow position: | chr16:14754258-14754105 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 24-182 |
| Cow position: | chr16:49126121-49125956 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 25-136 |
| Cow position: | chr16:10504893-10505001 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 25-137 |
| Cow position: | chr16:33646082-33646203 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 25-138 |
| Cow position: | chr16:41653040-41653161 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 99 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 25-143 |
| Cow position: | chr16:32893695-32893813 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 51, 64 |
| Conread position: | 25-145 |
| Cow position: | chr16:16816904-16817027 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 25-145 |
| Cow position: | chr16:17474832-17474952 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 48, 23 |
| Conread position: | 25-145 |
| Cow position: | chr16:31011394-31011524 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 106 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 25-147 |
| Cow position: | chr16:15251985-15251862 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 49, 91 |
| Conread position: | 25-149 |
| Cow position: | chr16:31484594-31484466 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 21, 32 |
| Conread position: | 25-149 |
| Cow position: | chr16:45554510-45554634 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-149 |
| Cow position: | chr16:48130328-48130196 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 25-151 |
| Cow position: | chr16:7723768-7723901 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 54, 86 |
| Conread position: | 25-151 |
| Cow position: | chr16:28192120-28192254 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 25-151 |
| Cow position: | chr16:37401320-37401441 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 25-151 |
| Cow position: | chr16:40514415-40514291 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 25-151 |
| Cow position: | chr16:42078781-42078646 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 25-151 |
| Cow position: | chr16:48956865-48957001 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 25-152 |
| Cow position: | chr16:19670286-19670155 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 25-152 |
| Cow position: | chr16:23515699-23515563 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 25-152 |
| Cow position: | chr16:24855606-24855737 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 25-154 |
| Cow position: | chr16:50931458-50931328 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 25-155 |
| Cow position: | chr16:9985326-9985197 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 25-161 |
| Cow position: | chr16:48095698-48095558 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 47, 127 |
| Conread position: | 25-164 |
| Cow position: | chr16:30211521-30211662 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 47, 126 |
| Conread position: | 25-165 |
| Cow position: | chr16:20824544-20824693 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 25-165 |
| Cow position: | chr16:56285620-56285478 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 25-166 |
| Cow position: | chr16:47518912-47519051 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 21, 54 |
| Conread position: | 25-167 |
| Cow position: | chr16:27728327-27728467 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 58, 100 |
| Conread position: | 25-168 |
| Cow position: | chr16:3938944-3938794 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 53, 130 |
| Conread position: | 25-168 |
| Cow position: | chr16:42778014-42778168 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 25-171 |
| Cow position: | chr16:31079024-31078881 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 25-175 |
| Cow position: | chr16:11134914-11134760 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 51, 127 |
| Conread position: | 26-137 |
| Cow position: | chr16:17736306-17736416 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 26-151 |
| Cow position: | chr16:49734078-49733943 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 26-155 |
| Cow position: | chr16:12111898-12111761 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 26-162 |
| Cow position: | chr16:13689734-13689876 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 31-145 |
| Cow position: | chr16:23881139-23881017 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 31-148 |
| Cow position: | chr16:13290587-13290698 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 96 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 31-149 |
| Cow position: | chr16:13906374-13906254 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 31-149 |
| Cow position: | chr16:16178105-16178225 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 42, 19 |
| Conread position: | 31-151 |
| Cow position: | chr16:4102758-4102640 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 31-151 |
| Cow position: | chr16:53451778-53451907 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 31-152 |
| Cow position: | chr16:51598540-51598410 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 31-156 |
| Cow position: | chr16:27281829-27281700 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 32, 93 |
| Conread position: | 31-156 |
| Cow position: | chr16:51697158-51697282 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 31-158 |
| Cow position: | chr16:12324528-12324665 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 31-164 |
| Cow position: | chr16:31149450-31149590 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 54, 31 |
| Conread position: | 31-165 |
| Cow position: | chr16:22863611-22863476 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 54, 11 |
| Conread position: | 31-165 |
| Cow position: | chr16:46433252-46433111 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 38, 131 |
| Conread position: | 31-165 |
| Cow position: | chr16:56231900-56232031 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 115, 37 |
| Conread position: | 31-166 |
| Cow position: | chr16:13990048-13990180 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 31-168 |
| Cow position: | chr16:26649556-26649417 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 40, 99 |
| Conread position: | 31-168 |
| Cow position: | chr16:52834815-52834682 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 31-171 |
| Cow position: | chr16:33704878-33705023 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 37, 129 |
| Conread position: | 31-211 |
| Cow position: | chr16:12101322-12101505 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 52, 128 |
| Conread position: | 32-149 |
| Cow position: | chr16:41696082-41696206 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 49, 100 |
| Conread position: | 32-149 |
| Cow position: | chr16:52170129-52170253 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 32-163 |
| Cow position: | chr16:27723298-27723423 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 32-167 |
| Cow position: | chr16:30816001-30816137 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 54, 116 |
| Conread position: | 32-187 |
| Cow position: | chr16:45813625-45813463 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 38, 132 |
| Conread position: | 33-151 |
| Cow position: | chr16:29655400-29655516 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 33-165 |
| Cow position: | chr16:51578366-51578232 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 33-174 |
| Cow position: | chr16:54709965-54709828 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 33-188 |
| Cow position: | chr16:11584330-11584170 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 49, 137 |
| Conread position: | 34-145 |
| Cow position: | chr16:11765173-11765059 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 92 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 34-150 |
| Cow position: | chr16:52275053-52274934 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 39-151 |
| Cow position: | chr16:40333245-40333132 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 75-149 |
| Cow position: | chr16:48340267-48340193 (view UCSC Genome Browser custom track) |
| Alignm length: | 75 |
| Alignm identity: | 69 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.