Cow genome map

Conread name: Ss1.1-rpigcf0_006765.5

Conread position: 17-152
Cow position: chr17:12200896-12201035 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 106
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 60, 0

Conread position: 17-152
Cow position: chr17:24974044-24974186 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 114
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 52, 0

Conread position: 23-137
Cow position: chr17:38736543-38736659 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 92
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 51, 0

Conread position: 23-150
Cow position: chr17:21676995-21677132 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 107
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 42, 0

Conread position: 23-151
Cow position: chr17:33164714-33164578 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 44, 0

Conread position: 23-163
Cow position: chr17:831694-831550 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 111
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 73, 136

Conread position: 23-165
Cow position: chr17:10016384-10016532 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 121
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 51, 11

Conread position: 23-167
Cow position: chr17:17044227-17044076 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 119
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 62, 31

Conread position: 25-130
Cow position: chr17:40852079-40852189 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 92
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 57, 0

Conread position: 25-136
Cow position: chr17:5422962-5422851 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 90
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 25-145
Cow position: chr17:39759225-39759344 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 96
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 29, 0

Conread position: 25-147
Cow position: chr17:36330851-36330729 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 85, 29

Conread position: 25-148
Cow position: chr17:1025718-1025595 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 107
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 25-149
Cow position: chr17:13922596-13922722 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 99
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 57, 0

Conread position: 25-149
Cow position: chr17:17035056-17035186 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 105
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 53, 0

Conread position: 25-149
Cow position: chr17:21039664-21039796 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 109
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 60, 0

Conread position: 25-149
Cow position: chr17:25612197-25612327 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 106
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 58, 0

Conread position: 25-150
Cow position: chr17:946464-946597 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 106
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 55, 0

Conread position: 25-150
Cow position: chr17:1562680-1562550 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 102
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 56, 0

Conread position: 25-151
Cow position: chr17:8809398-8809266 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 109
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 46, 0

Conread position: 25-151
Cow position: chr17:12325658-12325528 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 103
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 60, 0

Conread position: 25-151
Cow position: chr17:23257596-23257474 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 98
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 25-151
Cow position: chr17:24987313-24987444 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 103
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 50, 0

Conread position: 25-151
Cow position: chr17:25128246-25128112 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 108
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 50, 0

Conread position: 25-151
Cow position: chr17:29282277-29282400 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 98
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 41, 0

Conread position: 25-151
Cow position: chr17:33933636-33933506 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 104
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 51, 0

Conread position: 25-151
Cow position: chr17:37340924-37340789 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 108
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 47, 0

Conread position: 25-151
Cow position: chr17:42150498-42150630 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 102
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 49, 0

Conread position: 25-155
Cow position: chr17:9932193-9932064 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 106
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 121, 48

Conread position: 25-155
Cow position: chr17:33155048-33154912 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 109
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 44, 0

Conread position: 25-158
Cow position: chr17:42675920-42675791 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 43, 0

Conread position: 25-161
Cow position: chr17:3353989-3354123 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 108
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 88, 49

Conread position: 25-164
Cow position: chr17:39606537-39606678 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 115
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 61, 96

Conread position: 25-165
Cow position: chr17:9260505-9260355 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 120
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 48, 0

Conread position: 25-165
Cow position: chr17:24587731-24587880 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 123
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 54, 0

Conread position: 25-165
Cow position: chr17:27606624-27606769 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 115
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 56, 101

Conread position: 25-165
Cow position: chr17:30501704-30501557 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 115
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 44, 105

Conread position: 25-165
Cow position: chr17:30728611-30728762 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 122
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 46, 141

Conread position: 25-167
Cow position: chr17:36864737-36864884 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 25-169
Cow position: chr17:32332984-32332832 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 121
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 51, 102

Conread position: 25-176
Cow position: chr17:9824776-9824935 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 125
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 48, 0

Conread position: 25-183
Cow position: chr17:27922611-27922450 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 51, 128

Conread position: 25-185
Cow position: chr17:2729811-2729641 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 125
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 51, 0

Conread position: 26-161
Cow position: chr17:20836198-20836344 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 113
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 47, 0

Conread position: 26-167
Cow position: chr17:21718889-21718740 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 122
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 43, 136

Conread position: 26-168
Cow position: chr17:20783086-20782940 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 116
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 44, 127

Conread position: 28-168
Cow position: chr17:40250530-40250669 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 112
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 48, 57

Conread position: 29-152
Cow position: chr17:3364704-3364832 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 102
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 47, 0

Conread position: 29-164
Cow position: chr17:25582678-25582551 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 39, 0

Conread position: 31-136
Cow position: chr17:12536352-12536247 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 89
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 31-143
Cow position: chr17:5372414-5372298 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 97
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 43, 0

Conread position: 31-149
Cow position: chr17:6423877-6423994 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 98
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 45, 0

Conread position: 31-149
Cow position: chr17:35276327-35276209 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 94
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 100, 83

Conread position: 31-150
Cow position: chr17:17059536-17059659 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 52, 0

Conread position: 31-150
Cow position: chr17:44234363-44234486 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 45, 0

Conread position: 31-151
Cow position: chr17:27429678-27429798 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 45, 66

Conread position: 31-151
Cow position: chr17:29245556-29245676 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 92
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 31-151
Cow position: chr17:30977133-30977258 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 104
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 41, 99

Conread position: 31-158
Cow position: chr17:25511357-25511492 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 42, 0

Conread position: 31-160
Cow position: chr17:24612763-24612898 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 113
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 55, 0

Conread position: 31-161
Cow position: chr17:11912390-11912252 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 113
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 45, 0

Conread position: 31-163
Cow position: chr17:29084287-29084422 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 37, 96

Conread position: 31-166
Cow position: chr17:42259328-42259456 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 109
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 53, 0

Conread position: 31-167
Cow position: chr17:1469488-1469625 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 102
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 123, 0

Conread position: 31-167
Cow position: chr17:32471668-32471531 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 116
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 54, 110

Conread position: 31-167
Cow position: chr17:33793276-33793410 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 112
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 48, 82

Conread position: 31-169
Cow position: chr17:24497265-24497397 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 110
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 8, 0

Conread position: 31-176
Cow position: chr17:6318754-6318600 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 49, 0

Conread position: 32-160
Cow position: chr17:25473166-25473029 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 115
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 53, 0

Conread position: 32-167
Cow position: chr17:12019435-12019302 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 30, 0

Conread position: 32-181
Cow position: chr17:7959294-7959448 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 122
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 51, 120

Conread position: 33-145
Cow position: chr17:13478481-13478368 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 95
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 42, 0

Conread position: 33-146
Cow position: chr17:19544117-19543995 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 100
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 43, 0

Conread position: 33-149
Cow position: chr17:18934374-18934496 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 101
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 48, 98

Conread position: 33-150
Cow position: chr17:908855-908980 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 101
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 46, 0

Conread position: 33-151
Cow position: chr17:22223830-22223956 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 104
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 41, 0

Conread position: 33-171
Cow position: chr17:23358236-23358376 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 107
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 118, 0

Conread position: 35-161
Cow position: chr17:32418999-32418865 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 112
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 44, 0

Conread position: 35-162
Cow position: chr17:33653568-33653437 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 102
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 44, 0

Conread position: 36-163
Cow position: chr17:20930420-20930556 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 116
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 11, 127

Conread position: 39-167
Cow position: chr17:34790943-34790807 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 107
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 41, 0

Conread position: 40-149
Cow position: chr17:41144260-41144146 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 94
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 49, 0

Conread position: 47-161
Cow position: chr17:26818342-26818220 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 100
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 32, 0

Conread position: 52-160
Cow position: chr17:23736868-23736978 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 91
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 24, 16

Conread position: 63-165
Cow position: chr17:41912769-41912870 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 86
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 91, 0

Show alignments to all cow chromosomes.