Cow genome map
| Conread name: | Ss1.1-rpigcf0_006765.5 |
| Conread position: | 14-164 |
| Cow position: | chr18:54130305-54130161 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 21-158 |
| Cow position: | chr18:18520772-18520625 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 22-152 |
| Cow position: | chr18:22180747-22180612 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 22-165 |
| Cow position: | chr18:49981409-49981276 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 24-152 |
| Cow position: | chr18:20462662-20462538 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 24-167 |
| Cow position: | chr18:11618713-11618856 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 51, 32 |
| Conread position: | 25-143 |
| Cow position: | chr18:30586192-30586076 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 25-146 |
| Cow position: | chr18:21143930-21143805 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 25-149 |
| Cow position: | chr18:4485632-4485762 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 25-149 |
| Cow position: | chr18:28930603-28930475 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 25-149 |
| Cow position: | chr18:29091771-29091894 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 97 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 25-149 |
| Cow position: | chr18:44206051-44205928 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 49, 94 |
| Conread position: | 25-149 |
| Cow position: | chr18:44262663-44262789 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 25-149 |
| Cow position: | chr18:45903864-45903730 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 25-149 |
| Cow position: | chr18:48713584-48713708 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-149 |
| Cow position: | chr18:50632409-50632279 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 55, 37 |
| Conread position: | 25-149 |
| Cow position: | chr18:51383364-51383232 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 25-150 |
| Cow position: | chr18:30247971-30247838 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 25-150 |
| Cow position: | chr18:45558181-45558310 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 25-151 |
| Cow position: | chr18:5072377-5072249 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 25-151 |
| Cow position: | chr18:8171052-8170923 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 25-151 |
| Cow position: | chr18:19831615-19831743 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 25-151 |
| Cow position: | chr18:34444703-34444569 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 25-151 |
| Cow position: | chr18:49603010-49602874 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 25-152 |
| Cow position: | chr18:9089732-9089860 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 60, 89 |
| Conread position: | 25-152 |
| Cow position: | chr18:24719346-24719478 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 25-152 |
| Cow position: | chr18:47802059-47801927 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 25-153 |
| Cow position: | chr18:25006460-25006333 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 116, 43 |
| Conread position: | 25-155 |
| Cow position: | chr18:55119908-55120040 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 37, 94 |
| Conread position: | 25-158 |
| Cow position: | chr18:38985732-38985866 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 25-161 |
| Cow position: | chr18:10117773-10117915 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 25-161 |
| Cow position: | chr18:12023604-12023460 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 52, 18 |
| Conread position: | 25-161 |
| Cow position: | chr18:17390961-17390812 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 25-161 |
| Cow position: | chr18:31711528-31711399 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 25-161 |
| Cow position: | chr18:47419832-47419969 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 54, 23 |
| Conread position: | 25-163 |
| Cow position: | chr18:50359365-50359504 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 49, 124 |
| Conread position: | 25-165 |
| Cow position: | chr18:15809770-15809631 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 56, 49 |
| Conread position: | 25-165 |
| Cow position: | chr18:18844049-18844193 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 25-165 |
| Cow position: | chr18:20641463-20641319 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 25-180 |
| Cow position: | chr18:1571204-1571045 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 60, 135 |
| Conread position: | 25-180 |
| Cow position: | chr18:43400682-43400527 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 49, 95 |
| Conread position: | 25-182 |
| Cow position: | chr18:23630574-23630416 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 25-188 |
| Cow position: | chr18:2793938-2793773 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 48, 141 |
| Conread position: | 26-149 |
| Cow position: | chr18:11856935-11857062 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 26-151 |
| Cow position: | chr18:43796921-43796790 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 26-153 |
| Cow position: | chr18:2146545-2146422 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 26-162 |
| Cow position: | chr18:17007446-17007306 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 40, 87 |
| Conread position: | 31-145 |
| Cow position: | chr18:49017532-49017645 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 53, 89 |
| Conread position: | 31-149 |
| Cow position: | chr18:9010747-9010871 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 101 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 31-149 |
| Cow position: | chr18:11814343-11814465 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 31-149 |
| Cow position: | chr18:12056642-12056528 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 31-149 |
| Cow position: | chr18:18592512-18592630 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 45, 37 |
| Conread position: | 31-150 |
| Cow position: | chr18:3132731-3132606 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 31-150 |
| Cow position: | chr18:9596222-9596344 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 31-151 |
| Cow position: | chr18:9974289-9974162 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 48, 25 |
| Conread position: | 31-151 |
| Cow position: | chr18:17925756-17925874 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 35, 44 |
| Conread position: | 31-151 |
| Cow position: | chr18:38937860-38937988 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 31-151 |
| Cow position: | chr18:46452839-46452715 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 31-151 |
| Cow position: | chr18:47680551-47680678 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 54, 30 |
| Conread position: | 31-151 |
| Cow position: | chr18:47865108-47865235 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 54, 30 |
| Conread position: | 31-151 |
| Cow position: | chr18:50004666-50004538 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 31-152 |
| Cow position: | chr18:22790049-22789921 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 31-158 |
| Cow position: | chr18:47824734-47824599 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 31-158 |
| Cow position: | chr18:49440880-49441018 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 31-161 |
| Cow position: | chr18:44917796-44917933 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 31-164 |
| Cow position: | chr18:28322696-28322831 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 43, 31 |
| Conread position: | 31-165 |
| Cow position: | chr18:14586431-14586296 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 31-165 |
| Cow position: | chr18:35581999-35581870 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 122, 37 |
| Conread position: | 31-167 |
| Cow position: | chr18:29648823-29648963 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 54, 19 |
| Conread position: | 31-167 |
| Cow position: | chr18:37804678-37804814 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 74, 50 |
| Conread position: | 31-167 |
| Cow position: | chr18:49100329-49100202 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 31-171 |
| Cow position: | chr18:2553878-2553729 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 31-176 |
| Cow position: | chr18:22569027-22568875 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 42, 81 |
| Conread position: | 31-177 |
| Cow position: | chr18:48290188-48290044 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 31-183 |
| Cow position: | chr18:30341145-30340983 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 43, 151 |
| Conread position: | 31-184 |
| Cow position: | chr18:48407778-48407934 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 32-142 |
| Cow position: | chr18:29065345-29065233 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 32-161 |
| Cow position: | chr18:41702874-41703011 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 46, 124 |
| Conread position: | 32-171 |
| Cow position: | chr18:50095369-50095219 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 36-156 |
| Cow position: | chr18:12113321-12113195 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 45, 0 |
Show alignments to all cow chromosomes.