Cow genome map
| Conread name: | Ss1.1-rpigcf0_006765.5 |
| Conread position: | 9-173 |
| Cow position: | chr20:15548795-15548625 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 11, 123 |
| Conread position: | 18-160 |
| Cow position: | chr20:3502612-3502754 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 63, 8 |
| Conread position: | 20-160 |
| Cow position: | chr20:14493194-14493334 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 67, 12 |
| Conread position: | 23-149 |
| Cow position: | chr20:12420512-12420377 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 23-150 |
| Cow position: | chr20:22065173-22065304 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 23-151 |
| Cow position: | chr20:14980398-14980263 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 51, 33 |
| Conread position: | 23-152 |
| Cow position: | chr20:17530086-17529955 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 59, 18 |
| Conread position: | 23-162 |
| Cow position: | chr20:24097108-24097250 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 74, 51 |
| Conread position: | 23-167 |
| Cow position: | chr20:11548617-11548469 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 53, 129 |
| Conread position: | 23-196 |
| Cow position: | chr20:24069913-24070091 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 44, 34 |
| Conread position: | 25-137 |
| Cow position: | chr20:26905784-26905892 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 91 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 25-144 |
| Cow position: | chr20:13617335-13617448 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 25-147 |
| Cow position: | chr20:7438742-7438617 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 25-147 |
| Cow position: | chr20:25009523-25009393 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 25-148 |
| Cow position: | chr20:20158245-20158372 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 25-149 |
| Cow position: | chr20:22235421-22235541 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 25-149 |
| Cow position: | chr20:35201707-35201589 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 25-150 |
| Cow position: | chr20:7738122-7737991 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 25-151 |
| Cow position: | chr20:3255145-3255278 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 25-151 |
| Cow position: | chr20:4334421-4334294 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 25-151 |
| Cow position: | chr20:13805430-13805560 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 25-151 |
| Cow position: | chr20:18379487-18379621 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 25-151 |
| Cow position: | chr20:28605318-28605450 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 25-151 |
| Cow position: | chr20:32174615-32174739 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 25-151 |
| Cow position: | chr20:38061657-38061529 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 25-151 |
| Cow position: | chr20:38934946-38934822 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 25-152 |
| Cow position: | chr20:10208918-10209052 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 58, 12 |
| Conread position: | 25-163 |
| Cow position: | chr20:19636067-19635923 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 44, 129 |
| Conread position: | 25-166 |
| Cow position: | chr20:28982809-28982959 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 25-167 |
| Cow position: | chr20:14806996-14807144 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 50, 137 |
| Conread position: | 25-170 |
| Cow position: | chr20:1640345-1640206 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 25-170 |
| Cow position: | chr20:5644896-5645039 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 25-178 |
| Cow position: | chr20:7426088-7425922 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 25-182 |
| Cow position: | chr20:24491914-24491751 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 60, 37 |
| Conread position: | 25-184 |
| Cow position: | chr20:12581845-12581679 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 25-188 |
| Cow position: | chr20:4931190-4931363 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 54, 10 |
| Conread position: | 25-188 |
| Cow position: | chr20:8556160-8555992 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 49, 134 |
| Conread position: | 26-152 |
| Cow position: | chr20:1220445-1220318 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 29-151 |
| Cow position: | chr20:27407780-27407651 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 56, 103 |
| Conread position: | 29-182 |
| Cow position: | chr20:33623440-33623284 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 53, 11 |
| Conread position: | 31-149 |
| Cow position: | chr20:21169647-21169527 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 31-149 |
| Cow position: | chr20:25351298-25351184 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 99 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 31-151 |
| Cow position: | chr20:38701008-38700884 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 97 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 31-151 |
| Cow position: | chr20:38818115-38818233 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 94 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 31-162 |
| Cow position: | chr20:398191-398058 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 57, 25 |
| Conread position: | 31-164 |
| Cow position: | chr20:4892004-4891861 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 31-166 |
| Cow position: | chr20:23846549-23846407 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 66, 130 |
| Conread position: | 31-175 |
| Cow position: | chr20:33532418-33532558 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 32-145 |
| Cow position: | chr20:3148800-3148919 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 32-161 |
| Cow position: | chr20:4786902-4786778 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 33-151 |
| Cow position: | chr20:7383860-7383745 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 96 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 34-169 |
| Cow position: | chr20:38430898-38430756 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 40, 137 |
| Conread position: | 38-173 |
| Cow position: | chr20:41313507-41313645 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 36, 113 |
| Conread position: | 40-149 |
| Cow position: | chr20:2298666-2298555 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 46, 103 |
| Conread position: | 54-163 |
| Cow position: | chr20:39155865-39155976 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 89 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 58-195 |
| Cow position: | chr20:18400085-18400225 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 9, 92 |
| Conread position: | 75-171 |
| Cow position: | chr20:24117270-24117174 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 81 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 79-163 |
| Cow position: | chr20:3863339-3863254 (view UCSC Genome Browser custom track) |
| Alignm length: | 86 |
| Alignm identity: | 76 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 68, 0 |
Show alignments to all cow chromosomes.