Cow genome map
| Conread name: | Ss1.1-rpigcf0_006765.5 |
| Conread position: | 9-167 |
| Cow position: | chr21:40820731-40820569 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 11, 62 |
| Conread position: | 23-149 |
| Cow position: | chr21:30657998-30658124 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 23-161 |
| Cow position: | chr21:23783714-23783572 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 62, 105 |
| Conread position: | 23-165 |
| Cow position: | chr21:46451826-46451693 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 24-161 |
| Cow position: | chr21:11739991-11739844 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 24-165 |
| Cow position: | chr21:11272436-11272576 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 54, 13 |
| Conread position: | 25-145 |
| Cow position: | chr21:37495814-37495685 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 106 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 25-148 |
| Cow position: | chr21:8509304-8509173 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 25-148 |
| Cow position: | chr21:11678182-11678060 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 25-148 |
| Cow position: | chr21:14126407-14126534 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 25-149 |
| Cow position: | chr21:802187-802060 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 25-149 |
| Cow position: | chr21:7673250-7673376 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 25-149 |
| Cow position: | chr21:25012212-25012341 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 60, 18 |
| Conread position: | 25-149 |
| Cow position: | chr21:27229664-27229540 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 62, 25 |
| Conread position: | 25-150 |
| Cow position: | chr21:44214256-44214375 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 25-151 |
| Cow position: | chr21:641717-641849 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 25-151 |
| Cow position: | chr21:33982680-33982549 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 25-151 |
| Cow position: | chr21:37480095-37480229 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 25-156 |
| Cow position: | chr21:36398433-36398300 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 52, 118 |
| Conread position: | 25-157 |
| Cow position: | chr21:26735534-26735668 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 25-159 |
| Cow position: | chr21:31462692-31462831 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 25-160 |
| Cow position: | chr21:28907416-28907275 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 25-160 |
| Cow position: | chr21:40930345-40930204 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 58, 125 |
| Conread position: | 25-161 |
| Cow position: | chr21:16498646-16498791 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 25-161 |
| Cow position: | chr21:28030418-28030551 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 64, 90 |
| Conread position: | 25-161 |
| Cow position: | chr21:30368206-30368349 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 25-161 |
| Cow position: | chr21:42135486-42135344 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 25-165 |
| Cow position: | chr21:47719172-47719027 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 49, 37 |
| Conread position: | 25-167 |
| Cow position: | chr21:12339753-12339900 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 59, 99 |
| Conread position: | 25-170 |
| Cow position: | chr21:8426576-8426724 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 53, 37 |
| Conread position: | 25-170 |
| Cow position: | chr21:34654203-34654353 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 60, 134 |
| Conread position: | 25-171 |
| Cow position: | chr21:30592179-30592031 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 60, 126 |
| Conread position: | 25-174 |
| Cow position: | chr21:742407-742561 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 49, 134 |
| Conread position: | 25-176 |
| Cow position: | chr21:32559235-32559078 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 25-182 |
| Cow position: | chr21:42341808-42341650 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 60, 132 |
| Conread position: | 25-189 |
| Cow position: | chr21:33413958-33413794 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 89, 60 |
| Conread position: | 26-150 |
| Cow position: | chr21:45835259-45835126 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 26-168 |
| Cow position: | chr21:82198-82340 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 63, 72 |
| Conread position: | 26-174 |
| Cow position: | chr21:9314937-9315088 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 46, 124 |
| Conread position: | 28-149 |
| Cow position: | chr21:20193279-20193400 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 30, 51 |
| Conread position: | 28-152 |
| Cow position: | chr21:35337790-35337660 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 41, 107 |
| Conread position: | 31-149 |
| Cow position: | chr21:15012575-15012694 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 48, 91 |
| Conread position: | 31-149 |
| Cow position: | chr21:23587018-23587135 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 94 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 31-150 |
| Cow position: | chr21:6851308-6851429 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 101 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 31, 57 |
| Conread position: | 31-152 |
| Cow position: | chr21:22851056-22851181 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 31-153 |
| Cow position: | chr21:13883622-13883744 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 45, 94 |
| Conread position: | 31-161 |
| Cow position: | chr21:19868819-19868689 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 47, 118 |
| Conread position: | 31-161 |
| Cow position: | chr21:44658703-44658836 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 31-161 |
| Cow position: | chr21:44861369-44861246 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 31-163 |
| Cow position: | chr21:71723-71863 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 43, 6 |
| Conread position: | 31-164 |
| Cow position: | chr21:20174454-20174590 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 31-165 |
| Cow position: | chr21:41590429-41590287 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 31-174 |
| Cow position: | chr21:5789497-5789645 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 41, 128 |
| Conread position: | 31-200 |
| Cow position: | chr21:30222481-30222654 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 47, 122 |
| Conread position: | 32-190 |
| Cow position: | chr21:8349465-8349622 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 51, 91 |
| Conread position: | 34-146 |
| Cow position: | chr21:24875492-24875612 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 101 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 39-149 |
| Cow position: | chr21:674817-674931 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 39-170 |
| Cow position: | chr21:25014889-25014756 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 43-161 |
| Cow position: | chr21:27569003-27568883 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 13, 26 |
| Conread position: | 50-161 |
| Cow position: | chr21:27744190-27744304 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 92 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 13, 0 |
Show alignments to all cow chromosomes.