Cow genome map
| Conread name: | Ss1.1-rpigcf0_006765.5 |
| Conread position: | 23-149 |
| Cow position: | chr23:1194425-1194293 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 23-151 |
| Cow position: | chr23:25968487-25968620 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 25-147 |
| Cow position: | chr23:10497766-10497896 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 25-148 |
| Cow position: | chr23:5881449-5881320 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 25-149 |
| Cow position: | chr23:11053825-11053696 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 24, 88 |
| Conread position: | 25-149 |
| Cow position: | chr23:16744615-16744745 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 25-149 |
| Cow position: | chr23:18901986-18901864 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 25-149 |
| Cow position: | chr23:24685313-24685442 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 44, 31 |
| Conread position: | 25-150 |
| Cow position: | chr23:18710390-18710269 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 25-150 |
| Cow position: | chr23:40275479-40275354 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 74, 102 |
| Conread position: | 25-151 |
| Cow position: | chr23:1981593-1981469 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 49, 37 |
| Conread position: | 25-151 |
| Cow position: | chr23:2457511-2457635 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 25-151 |
| Cow position: | chr23:2511214-2511349 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 25-151 |
| Cow position: | chr23:3917796-3917666 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 25-151 |
| Cow position: | chr23:16881094-16880966 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 25-151 |
| Cow position: | chr23:17597495-17597626 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 51, 101 |
| Conread position: | 25-151 |
| Cow position: | chr23:22668436-22668307 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 25-155 |
| Cow position: | chr23:22651475-22651607 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 25-158 |
| Cow position: | chr23:24809368-24809226 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 25-160 |
| Cow position: | chr23:6244528-6244389 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 25-161 |
| Cow position: | chr23:1490429-1490568 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 25-164 |
| Cow position: | chr23:534296-534445 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 25-164 |
| Cow position: | chr23:5426502-5426655 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 25-164 |
| Cow position: | chr23:19872614-19872483 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 25-165 |
| Cow position: | chr23:2801361-2801212 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 25-165 |
| Cow position: | chr23:16877077-16877218 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 12, 62 |
| Conread position: | 25-166 |
| Cow position: | chr23:8063612-8063747 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 25-167 |
| Cow position: | chr23:1429757-1429613 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 43, 141 |
| Conread position: | 25-170 |
| Cow position: | chr23:20539454-20539603 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 25-171 |
| Cow position: | chr23:12363549-12363395 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 25-171 |
| Cow position: | chr23:19565518-19565669 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 54, 102 |
| Conread position: | 25-173 |
| Cow position: | chr23:40081581-40081723 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 25-182 |
| Cow position: | chr23:15056503-15056341 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 25-192 |
| Cow position: | chr23:40995239-40995409 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 47, 98 |
| Conread position: | 25-202 |
| Cow position: | chr23:16961366-16961538 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 173, 59 |
| Conread position: | 25-202 |
| Cow position: | chr23:21638445-21638631 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 48, 151 |
| Conread position: | 25-259 |
| Cow position: | chr23:1222168-1221927 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 55, 90 |
| Conread position: | 26-156 |
| Cow position: | chr23:2282112-2281979 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 73, 30 |
| Conread position: | 26-166 |
| Cow position: | chr23:29345699-29345559 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 50, 122 |
| Conread position: | 27-145 |
| Cow position: | chr23:20725617-20725493 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 29-165 |
| Cow position: | chr23:7155627-7155481 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 31-149 |
| Cow position: | chr23:1438367-1438480 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 87, 37 |
| Conread position: | 31-149 |
| Cow position: | chr23:5732625-5732739 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 97 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 31-149 |
| Cow position: | chr23:7709865-7709984 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 55, 31 |
| Conread position: | 31-149 |
| Cow position: | chr23:18823064-18823186 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 31-149 |
| Cow position: | chr23:23104413-23104288 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 31-151 |
| Cow position: | chr23:24704365-24704487 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 38, 91 |
| Conread position: | 31-152 |
| Cow position: | chr23:17392693-17392812 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 31-154 |
| Cow position: | chr23:34611416-34611289 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 31-155 |
| Cow position: | chr23:5395401-5395275 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 31-159 |
| Cow position: | chr23:6147962-6147841 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 15, 38 |
| Conread position: | 31-161 |
| Cow position: | chr23:16564143-16564277 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 38, 100 |
| Conread position: | 31-163 |
| Cow position: | chr23:1583600-1583733 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 31-166 |
| Cow position: | chr23:30244604-30244744 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 31-175 |
| Cow position: | chr23:3293770-3293917 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 42, 23 |
| Conread position: | 31-196 |
| Cow position: | chr23:1883470-1883634 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 28, 127 |
| Conread position: | 32-163 |
| Cow position: | chr23:24718726-24718585 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 32-168 |
| Cow position: | chr23:5603670-5603526 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 33-150 |
| Cow position: | chr23:39778478-39778600 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 49, 95 |
| Conread position: | 33-165 |
| Cow position: | chr23:13202282-13202149 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 107, 50 |
| Conread position: | 34-150 |
| Cow position: | chr23:24509762-24509887 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 34-174 |
| Cow position: | chr23:26698393-26698255 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 35-149 |
| Cow position: | chr23:1891398-1891280 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 97 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 35-164 |
| Cow position: | chr23:18204485-18204621 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 36-149 |
| Cow position: | chr23:20542783-20542896 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 98 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 51, 5 |
| Conread position: | 36-161 |
| Cow position: | chr23:23033452-23033326 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 41, 5 |
| Conread position: | 39-161 |
| Cow position: | chr23:4646593-4646721 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 43-186 |
| Cow position: | chr23:15287053-15286915 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 45-149 |
| Cow position: | chr23:20615252-20615146 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 89 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 51, 19 |
Show alignments to all cow chromosomes.