Cow genome map
| Conread name: | Ss1.1-rpigcf0_006765.5 |
| Conread position: | 17-165 |
| Cow position: | chr24:23694867-23694720 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 69, 103 |
| Conread position: | 22-161 |
| Cow position: | chr24:39483515-39483648 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 23-150 |
| Cow position: | chr24:21834919-21834787 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 50, 39 |
| Conread position: | 23-151 |
| Cow position: | chr24:2402328-2402200 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 49, 77 |
| Conread position: | 23-151 |
| Cow position: | chr24:20364370-20364239 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 63, 79 |
| Conread position: | 23-152 |
| Cow position: | chr24:42687885-42688019 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 23-171 |
| Cow position: | chr24:37823567-37823722 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 24-195 |
| Cow position: | chr24:175454-175287 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 127, 60 |
| Conread position: | 25-141 |
| Cow position: | chr24:25122383-25122504 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 25-141 |
| Cow position: | chr24:43028288-43028161 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 25-144 |
| Cow position: | chr24:29539888-29539760 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 25-145 |
| Cow position: | chr24:29524343-29524219 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 25-145 |
| Cow position: | chr24:37037944-37038062 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 25-147 |
| Cow position: | chr24:5360758-5360884 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 25-148 |
| Cow position: | chr24:17938734-17938855 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 25-148 |
| Cow position: | chr24:27608064-27607937 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 60, 30 |
| Conread position: | 25-148 |
| Cow position: | chr24:39849847-39849718 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 25-149 |
| Cow position: | chr24:6488250-6488379 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 54, 113 |
| Conread position: | 25-149 |
| Cow position: | chr24:28303313-28303187 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 63, 43 |
| Conread position: | 25-149 |
| Cow position: | chr24:30235912-30236047 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 25-150 |
| Cow position: | chr24:7757814-7757945 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 25-150 |
| Cow position: | chr24:24227635-24227515 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 25-151 |
| Cow position: | chr24:1269825-1269954 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 25-151 |
| Cow position: | chr24:19186979-19187109 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 25-152 |
| Cow position: | chr24:230325-230458 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 25-152 |
| Cow position: | chr24:18474687-18474551 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 25-152 |
| Cow position: | chr24:27844486-27844355 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 25-158 |
| Cow position: | chr24:33244437-33244570 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 90, 44 |
| Conread position: | 25-160 |
| Cow position: | chr24:24540449-24540308 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 47, 128 |
| Conread position: | 25-161 |
| Cow position: | chr24:33372594-33372734 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 51, 31 |
| Conread position: | 25-161 |
| Cow position: | chr24:41925864-41926002 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 60, 103 |
| Conread position: | 25-161 |
| Cow position: | chr24:41934988-41935115 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 25-164 |
| Cow position: | chr24:30325739-30325591 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 25-165 |
| Cow position: | chr24:29984942-29984798 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 25-167 |
| Cow position: | chr24:39523407-39523256 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 25-170 |
| Cow position: | chr24:27940580-27940433 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 21, 138 |
| Conread position: | 25-187 |
| Cow position: | chr24:13724-13557 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 59, 37 |
| Conread position: | 25-187 |
| Cow position: | chr24:5141984-5142149 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 45, 104 |
| Conread position: | 26-149 |
| Cow position: | chr24:20807577-20807699 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 89, 59 |
| Conread position: | 26-152 |
| Cow position: | chr24:6887051-6887184 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 31-137 |
| Cow position: | chr24:31479501-31479396 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 88 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 45, 68 |
| Conread position: | 31-145 |
| Cow position: | chr24:27713357-27713239 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 96 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 31-145 |
| Cow position: | chr24:28330938-28330822 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 96 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 32, 81 |
| Conread position: | 31-147 |
| Cow position: | chr24:13610356-13610474 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 31-149 |
| Cow position: | chr24:24490970-24490851 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 50, 109 |
| Conread position: | 31-152 |
| Cow position: | chr24:28256011-28255885 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 31-156 |
| Cow position: | chr24:28344439-28344558 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 31-161 |
| Cow position: | chr24:13353087-13353213 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 31-161 |
| Cow position: | chr24:42175574-42175712 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 31-164 |
| Cow position: | chr24:2223164-2223031 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 31-164 |
| Cow position: | chr24:30313978-30313839 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 32, 8 |
| Conread position: | 31-165 |
| Cow position: | chr24:28510841-28510982 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 31-170 |
| Cow position: | chr24:24091292-24091138 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 31-187 |
| Cow position: | chr24:28721932-28722088 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 47, 125 |
| Conread position: | 31-188 |
| Cow position: | chr24:2730568-2730410 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 117, 53 |
| Conread position: | 32-144 |
| Cow position: | chr24:28234091-28234211 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 36-160 |
| Cow position: | chr24:37974928-37974797 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 37-163 |
| Cow position: | chr24:27413058-27412927 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 34, 11 |
| Conread position: | 37-180 |
| Cow position: | chr24:29849365-29849219 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 40, 121 |
| Conread position: | 38-167 |
| Cow position: | chr24:11208627-11208761 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 42, 66 |
| Conread position: | 48-176 |
| Cow position: | chr24:212040-212171 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 38, 127 |
| Conread position: | 67-165 |
| Cow position: | chr24:20537692-20537592 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 87 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 19, 90 |
| Conread position: | 70-161 |
| Cow position: | chr24:43024377-43024469 (view UCSC Genome Browser custom track) |
| Alignm length: | 93 |
| Alignm identity: | 79 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 76, 0 |
Show alignments to all cow chromosomes.