Cow genome map
| Conread name: | Ss1.1-rpigcf0_006765.5 |
| Conread position: | 23-145 |
| Cow position: | chr28:26960840-26960713 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 62, 39 |
| Conread position: | 23-153 |
| Cow position: | chr28:2279527-2279394 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 23-153 |
| Cow position: | chr28:19216890-19217022 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 23-158 |
| Cow position: | chr28:3746271-3746410 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 23-161 |
| Cow position: | chr28:4016600-4016741 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 62, 99 |
| Conread position: | 23-163 |
| Cow position: | chr28:29850746-29850604 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 50, 96 |
| Conread position: | 23-165 |
| Cow position: | chr28:20124854-20125001 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 57, 39 |
| Conread position: | 23-180 |
| Cow position: | chr28:17949044-17948885 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 59, 135 |
| Conread position: | 23-201 |
| Cow position: | chr28:11815007-11814823 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 59, 152 |
| Conread position: | 24-150 |
| Cow position: | chr28:24996543-24996413 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 49, 32 |
| Conread position: | 25-137 |
| Cow position: | chr28:3914788-3914897 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 25-145 |
| Cow position: | chr28:10140512-10140386 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 64, 25 |
| Conread position: | 25-145 |
| Cow position: | chr28:24082341-24082470 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 25-147 |
| Cow position: | chr28:9740537-9740660 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 25-149 |
| Cow position: | chr28:2737447-2737323 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 97 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-149 |
| Cow position: | chr28:4876513-4876642 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 25-149 |
| Cow position: | chr28:4884182-4884049 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 25-149 |
| Cow position: | chr28:5204266-5204389 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 71, 94 |
| Conread position: | 25-149 |
| Cow position: | chr28:8396406-8396529 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 56, 79 |
| Conread position: | 25-149 |
| Cow position: | chr28:10588950-10588829 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 25-149 |
| Cow position: | chr28:22371596-22371471 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 42, 97 |
| Conread position: | 25-149 |
| Cow position: | chr28:22813329-22813452 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 25-150 |
| Cow position: | chr28:16177325-16177455 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 44, 105 |
| Conread position: | 25-151 |
| Cow position: | chr28:777746-777882 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 25-151 |
| Cow position: | chr28:3678433-3678565 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 25-151 |
| Cow position: | chr28:4013155-4013289 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 25-151 |
| Cow position: | chr28:4588389-4588520 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 60, 113 |
| Conread position: | 25-151 |
| Cow position: | chr28:8681359-8681231 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 25-151 |
| Cow position: | chr28:8787610-8787745 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 25-151 |
| Cow position: | chr28:9109287-9109417 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 51, 29 |
| Conread position: | 25-151 |
| Cow position: | chr28:13269798-13269924 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-151 |
| Cow position: | chr28:16370012-16369883 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 25-151 |
| Cow position: | chr28:16919098-16918968 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 25-151 |
| Cow position: | chr28:19564157-19564029 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 61, 37 |
| Conread position: | 25-154 |
| Cow position: | chr28:10891244-10891117 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 25-158 |
| Cow position: | chr28:3740947-3741083 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 25-158 |
| Cow position: | chr28:9285306-9285164 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 25-158 |
| Cow position: | chr28:13474371-13474513 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 25-160 |
| Cow position: | chr28:11016481-11016617 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 61, 10 |
| Conread position: | 25-161 |
| Cow position: | chr28:3257059-3257208 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 25-161 |
| Cow position: | chr28:7750945-7750804 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 25-161 |
| Cow position: | chr28:7808710-7808846 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-161 |
| Cow position: | chr28:8936221-8936365 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 60, 31 |
| Conread position: | 25-163 |
| Cow position: | chr28:30902197-30902338 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 61, 126 |
| Conread position: | 25-165 |
| Cow position: | chr28:21868528-21868677 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 25-165 |
| Cow position: | chr28:24238406-24238263 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 48, 64 |
| Conread position: | 25-166 |
| Cow position: | chr28:3492713-3492564 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 25-169 |
| Cow position: | chr28:7132017-7131867 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 25-170 |
| Cow position: | chr28:4027392-4027246 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 55, 131 |
| Conread position: | 25-170 |
| Cow position: | chr28:4866502-4866351 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 25-171 |
| Cow position: | chr28:5205342-5205479 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 126, 46 |
| Conread position: | 25-174 |
| Cow position: | chr28:11426470-11426320 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 47, 140 |
| Conread position: | 25-176 |
| Cow position: | chr28:6975312-6975463 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 57, 124 |
| Conread position: | 25-180 |
| Cow position: | chr28:7350725-7350886 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 54, 99 |
| Conread position: | 25-184 |
| Cow position: | chr28:11305562-11305398 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 55, 126 |
| Conread position: | 25-187 |
| Cow position: | chr28:6091434-6091599 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 54, 124 |
| Conread position: | 25-200 |
| Cow position: | chr28:8304318-8304502 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 61, 175 |
| Conread position: | 26-149 |
| Cow position: | chr28:5805739-5805866 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 53, 76 |
| Conread position: | 26-150 |
| Cow position: | chr28:21845029-21845156 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 59, 98 |
| Conread position: | 26-168 |
| Cow position: | chr28:29416645-29416499 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 27-157 |
| Cow position: | chr28:7619077-7618948 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 45, 76 |
| Conread position: | 31-146 |
| Cow position: | chr28:10890658-10890541 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 31-151 |
| Cow position: | chr28:4071043-4071164 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 54, 93 |
| Conread position: | 31-152 |
| Cow position: | chr28:20046628-20046749 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 31-161 |
| Cow position: | chr28:10762971-10763104 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 31-161 |
| Cow position: | chr28:21263234-21263369 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 48, 122 |
| Conread position: | 31-165 |
| Cow position: | chr28:29989033-29988888 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 31-170 |
| Cow position: | chr28:32372321-32372464 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 32-141 |
| Cow position: | chr28:9069968-9070081 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 96 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 32-148 |
| Cow position: | chr28:26868073-26867951 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 32-149 |
| Cow position: | chr28:11585124-11585005 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 32-151 |
| Cow position: | chr28:3445404-3445273 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 32-151 |
| Cow position: | chr28:4101600-4101718 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 42, 64 |
| Conread position: | 32-164 |
| Cow position: | chr28:5254952-5255090 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 33-137 |
| Cow position: | chr28:16879652-16879760 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 89 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 35-151 |
| Cow position: | chr28:12991223-12991341 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 39-184 |
| Cow position: | chr28:30937586-30937444 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 47, 83 |
| Conread position: | 41-146 |
| Cow position: | chr28:4375536-4375425 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 43-170 |
| Cow position: | chr28:7964582-7964451 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 48-164 |
| Cow position: | chr28:5138902-5138780 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 51-177 |
| Cow position: | chr28:8291516-8291647 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 53-152 |
| Cow position: | chr28:4923508-4923610 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 87 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 53-167 |
| Cow position: | chr28:3397028-3396914 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 11, 95 |
Show alignments to all cow chromosomes.