Cow genome map

Conread name: Ss1.1-rpigcf0_006765.5

Conread position: 21-172
Cow position: chr4:1419282-1419439 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 68, 13

Conread position: 22-150
Cow position: chr4:29206588-29206717 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 102
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 54, 107

Conread position: 22-152
Cow position: chr4:57556542-57556673 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 99
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 51, 0

Conread position: 22-155
Cow position: chr4:14504983-14504851 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 109
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 74, 40

Conread position: 22-180
Cow position: chr4:21161161-21161325 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 48, 139

Conread position: 23-145
Cow position: chr4:29384178-29384054 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 99
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 64, 0

Conread position: 23-151
Cow position: chr4:18099005-18098868 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 112
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 52, 0

Conread position: 23-152
Cow position: chr4:19503985-19504116 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 112
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 53, 97

Conread position: 23-176
Cow position: chr4:4085054-4084893 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 128
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 53, 140

Conread position: 23-182
Cow position: chr4:15236689-15236847 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 114
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 117, 0

Conread position: 25-145
Cow position: chr4:28839676-28839797 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 94
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 52, 0

Conread position: 25-146
Cow position: chr4:22215452-22215325 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 101
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 60, 0

Conread position: 25-147
Cow position: chr4:27657035-27657161 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 106
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 61, 0

Conread position: 25-147
Cow position: chr4:33360163-33360282 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 101
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 49, 0

Conread position: 25-147
Cow position: chr4:41907523-41907393 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 106
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 56, 0

Conread position: 25-148
Cow position: chr4:62472138-62472266 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 102
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 71, 0

Conread position: 25-149
Cow position: chr4:3519480-3519610 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 107
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 60, 0

Conread position: 25-149
Cow position: chr4:19744934-19745061 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 102
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 49, 0

Conread position: 25-149
Cow position: chr4:51083279-51083149 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 108
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 57, 37

Conread position: 25-149
Cow position: chr4:51728138-51728265 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 103
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 51, 0

Conread position: 25-149
Cow position: chr4:66122308-66122178 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 104
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 55, 0

Conread position: 25-149
Cow position: chr4:68590830-68590960 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 103
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 71, 0

Conread position: 25-150
Cow position: chr4:34544365-34544497 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 105
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 71, 0

Conread position: 25-150
Cow position: chr4:65173161-65173294 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 55, 0

Conread position: 25-151
Cow position: chr4:4084391-4084263 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 101
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 51, 43

Conread position: 25-151
Cow position: chr4:25929275-25929402 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 108
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 59, 66

Conread position: 25-151
Cow position: chr4:26659359-26659493 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 111
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 55, 0

Conread position: 25-151
Cow position: chr4:49794718-49794843 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 104
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 51, 0

Conread position: 25-151
Cow position: chr4:54785870-54785737 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 106
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 55, 0

Conread position: 25-151
Cow position: chr4:61066824-61066946 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 99
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 49, 0

Conread position: 25-151
Cow position: chr4:66509696-66509819 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 100
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 51, 0

Conread position: 25-152
Cow position: chr4:3687987-3688123 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 110
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 46, 0

Conread position: 25-152
Cow position: chr4:20327650-20327529 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 108
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 47, 0

Conread position: 25-152
Cow position: chr4:38157029-38156899 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 104
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 60, 0

Conread position: 25-152
Cow position: chr4:49880636-49880511 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 108
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 60, 0

Conread position: 25-152
Cow position: chr4:61391168-61391041 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 104
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 50, 62

Conread position: 25-153
Cow position: chr4:35939675-35939547 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 101
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 61, 23

Conread position: 25-161
Cow position: chr4:34983440-34983298 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 108
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 60, 0

Conread position: 25-163
Cow position: chr4:36517424-36517295 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 108
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 43, 0

Conread position: 25-164
Cow position: chr4:14964887-14965019 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 112
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 95, 0

Conread position: 25-164
Cow position: chr4:59002081-59001932 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 118
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 49, 0

Conread position: 25-165
Cow position: chr4:4319093-4318947 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 114
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 28, 0

Conread position: 25-165
Cow position: chr4:17774291-17774159 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 116
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 59, 0

Conread position: 25-165
Cow position: chr4:35982058-35982205 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 47, 14

Conread position: 25-165
Cow position: chr4:46404849-46404704 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 60, 101

Conread position: 25-166
Cow position: chr4:19578446-19578591 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 121
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 51, 86

Conread position: 25-166
Cow position: chr4:65463450-65463308 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 119
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 61, 126

Conread position: 25-167
Cow position: chr4:12748354-12748212 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 25-167
Cow position: chr4:21065095-21065233 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 110
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 61, 25

Conread position: 25-167
Cow position: chr4:37915277-37915129 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 119
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 60, 0

Conread position: 25-169
Cow position: chr4:8083739-8083597 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 109
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 59, 0

Conread position: 25-169
Cow position: chr4:30250212-30250072 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 116
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 52, 71

Conread position: 25-169
Cow position: chr4:38209916-38209764 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 114
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 57, 0

Conread position: 25-170
Cow position: chr4:60302948-60302803 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 121
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 25-173
Cow position: chr4:19328643-19328798 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 52, 17

Conread position: 25-174
Cow position: chr4:3283388-3283238 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 115
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 90, 0

Conread position: 25-174
Cow position: chr4:34699975-34699827 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 113
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 121, 59

Conread position: 25-175
Cow position: chr4:17186292-17186131 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 123
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 51, 0

Conread position: 25-175
Cow position: chr4:48409210-48409072 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 123
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 43, 0

Conread position: 25-176
Cow position: chr4:32789946-32789798 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 115
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 58, 0

Conread position: 25-180
Cow position: chr4:34509899-34510052 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 123
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 126, 93

Conread position: 25-188
Cow position: chr4:39007563-39007723 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 129
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 46, 97

Conread position: 26-151
Cow position: chr4:28854215-28854083 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 108
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 53, 110

Conread position: 26-151
Cow position: chr4:51026410-51026544 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 46, 0

Conread position: 26-161
Cow position: chr4:66168272-66168135 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 107
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 60, 0

Conread position: 26-165
Cow position: chr4:30944014-30944161 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 116
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 59, 0

Conread position: 26-167
Cow position: chr4:20027043-20026895 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 113
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 43, 22

Conread position: 31-143
Cow position: chr4:53208358-53208468 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 96
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 53, 0

Conread position: 31-145
Cow position: chr4:3421687-3421811 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 101
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 37, 0

Conread position: 31-145
Cow position: chr4:25370169-25370281 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 91
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 43, 0

Conread position: 31-149
Cow position: chr4:85759-85885 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 103
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 15, 0

Conread position: 31-149
Cow position: chr4:12908438-12908560 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 102
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 52, 0

Conread position: 31-149
Cow position: chr4:28701423-28701536 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 99
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 56, 0

Conread position: 31-149
Cow position: chr4:51851277-51851404 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 102
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 55, 0

Conread position: 31-149
Cow position: chr4:65291791-65291672 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 98
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 42, 54

Conread position: 31-150
Cow position: chr4:59608120-59608004 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 95
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 35, 0

Conread position: 31-151
Cow position: chr4:19597259-19597139 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 96
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 31-151
Cow position: chr4:32601899-32602019 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 104
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 31-151
Cow position: chr4:66172726-66172602 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 58, 0

Conread position: 31-152
Cow position: chr4:19496916-19496785 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 105
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 31-162
Cow position: chr4:34919209-34919070 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 115
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 48, 0

Conread position: 31-167
Cow position: chr4:36290689-36290830 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 112
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 55, 130

Conread position: 31-168
Cow position: chr4:33838738-33838592 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 116
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 46, 0

Conread position: 31-168
Cow position: chr4:42608803-42608948 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 118
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 47, 125

Conread position: 31-173
Cow position: chr4:20124901-20124752 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 48, 0

Conread position: 31-176
Cow position: chr4:53134668-53134816 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 122
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 54, 0

Conread position: 31-181
Cow position: chr4:21506891-21506740 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 121
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 104, 36

Conread position: 31-185
Cow position: chr4:26306400-26306246 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 140, 132

Conread position: 31-186
Cow position: chr4:30769099-30769260 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 121
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 48, 0

Conread position: 32-151
Cow position: chr4:39569269-39569390 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 103
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 53, 0

Conread position: 32-165
Cow position: chr4:61193274-61193140 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 116
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 53, 5

Conread position: 33-151
Cow position: chr4:68358397-68358519 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 104
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 43, 68

Conread position: 35-167
Cow position: chr4:68806080-68806211 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 100
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 118, 0

Conread position: 40-149
Cow position: chr4:22701736-22701621 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 99
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 44, 89

Conread position: 53-164
Cow position: chr4:5727925-5728037 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 94
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 24, 0

Conread position: 63-164
Cow position: chr4:19324125-19324227 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 87
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 13, 5

Show alignments to all cow chromosomes.