Cow genome map

Conread name: Ss1.1-rpigcf0_006765.5

Conread position: 9-161
Cow position: chr7:40310962-40310804 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 120
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 11, 36

Conread position: 22-152
Cow position: chr7:31170850-31170715 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 115
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 54, 0

Conread position: 23-145
Cow position: chr7:39988840-39988970 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 104
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 50, 0

Conread position: 23-147
Cow position: chr7:15548139-15548269 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 102
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 50, 0

Conread position: 23-149
Cow position: chr7:29300661-29300536 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 99
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 118, 0

Conread position: 23-151
Cow position: chr7:35088763-35088903 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 111
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 61, 0

Conread position: 23-151
Cow position: chr7:36856641-36856778 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 109
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 39, 0

Conread position: 23-153
Cow position: chr7:24022357-24022226 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 108
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 53, 86

Conread position: 23-173
Cow position: chr7:38357534-38357385 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 125
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 141, 0

Conread position: 24-147
Cow position: chr7:32260088-32259957 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 109
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 58, 0

Conread position: 24-186
Cow position: chr7:35250804-35250643 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 127
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 51, 73

Conread position: 25-137
Cow position: chr7:14317050-14317168 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 98
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 56, 0

Conread position: 25-144
Cow position: chr7:48667522-48667638 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 99
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 43, 0

Conread position: 25-145
Cow position: chr7:53785870-53785752 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 99
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 58, 0

Conread position: 25-146
Cow position: chr7:1763532-1763656 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 104
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 61, 49

Conread position: 25-146
Cow position: chr7:25087355-25087480 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 107
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 51, 0

Conread position: 25-146
Cow position: chr7:66902657-66902773 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 97
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 31, 0

Conread position: 25-148
Cow position: chr7:4764953-4765079 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 105
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 48, 0

Conread position: 25-149
Cow position: chr7:15559795-15559925 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 103
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 60, 0

Conread position: 25-149
Cow position: chr7:22793452-22793576 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 104
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 25-149
Cow position: chr7:29479635-29479762 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 102
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 46, 0

Conread position: 25-149
Cow position: chr7:31315417-31315542 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 98
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 55, 23

Conread position: 25-149
Cow position: chr7:49222334-49222212 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 106
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 49, 0

Conread position: 25-150
Cow position: chr7:32884269-32884396 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 104
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 51, 14

Conread position: 25-151
Cow position: chr7:4129672-4129544 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 100
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 60, 0

Conread position: 25-151
Cow position: chr7:30931869-30931740 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 107
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 60, 75

Conread position: 25-151
Cow position: chr7:34224255-34224379 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 100
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 59, 0

Conread position: 25-151
Cow position: chr7:35300309-35300178 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 105
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 58, 87

Conread position: 25-151
Cow position: chr7:37394406-37394542 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 108
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 49, 0

Conread position: 25-151
Cow position: chr7:39416018-39416149 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 108
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 61, 0

Conread position: 25-151
Cow position: chr7:54712529-54712659 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 101
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 56, 0

Conread position: 25-152
Cow position: chr7:40406757-40406887 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 106
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 43, 119

Conread position: 25-155
Cow position: chr7:30666733-30666862 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 106
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 121, 43

Conread position: 25-156
Cow position: chr7:8089273-8089410 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 107
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 60, 0

Conread position: 25-158
Cow position: chr7:49106093-49105951 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 44, 0

Conread position: 25-160
Cow position: chr7:31497818-31497950 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 107
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 80, 71

Conread position: 25-161
Cow position: chr7:12488541-12488678 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 113
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 21, 43

Conread position: 25-161
Cow position: chr7:46818386-46818247 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 113
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 49, 17

Conread position: 25-161
Cow position: chr7:48721797-48721652 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 114
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 56, 31

Conread position: 25-161
Cow position: chr7:60247761-60247892 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 107
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 60, 0

Conread position: 25-162
Cow position: chr7:30017410-30017269 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 61, 126

Conread position: 25-164
Cow position: chr7:20181090-20180945 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 115
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 63, 0

Conread position: 25-165
Cow position: chr7:36996470-36996615 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 113
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 56, 24

Conread position: 25-167
Cow position: chr7:40567179-40567315 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 114
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 25, 0

Conread position: 25-167
Cow position: chr7:51621506-51621650 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 118
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 61, 0

Conread position: 25-170
Cow position: chr7:11019356-11019207 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 117
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 49, 128

Conread position: 25-175
Cow position: chr7:62497938-62497786 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 49, 75

Conread position: 25-177
Cow position: chr7:17752692-17752535 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 60, 15

Conread position: 25-180
Cow position: chr7:30277440-30277591 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 127
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 134, 43

Conread position: 25-185
Cow position: chr7:21483073-21482923 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 124
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 141, 46

Conread position: 25-201
Cow position: chr7:65695199-65695014 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 135
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 58, 0

Conread position: 26-149
Cow position: chr7:11784935-11784804 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 107
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 57, 0

Conread position: 26-151
Cow position: chr7:31523654-31523789 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 111
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 59, 0

Conread position: 26-157
Cow position: chr7:10415025-10414891 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 110
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 54, 100

Conread position: 26-172
Cow position: chr7:32946177-32946332 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 117
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 47, 0

Conread position: 26-201
Cow position: chr7:9449547-9449375 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 137
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 131, 50

Conread position: 31-145
Cow position: chr7:8658629-8658751 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 54, 0

Conread position: 31-147
Cow position: chr7:5199437-5199319 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 99
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 52, 25

Conread position: 31-147
Cow position: chr7:19329194-19329070 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 100
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 31-149
Cow position: chr7:12918466-12918341 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 104
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 45, 0

Conread position: 31-149
Cow position: chr7:15570152-15570278 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 105
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 58, 0

Conread position: 31-150
Cow position: chr7:206537-206656 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 92
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 31-151
Cow position: chr7:9070567-9070696 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 104
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 37, 0

Conread position: 31-163
Cow position: chr7:4868576-4868711 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 108
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 23, 67

Conread position: 31-165
Cow position: chr7:600438-600577 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 106
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 115, 0

Conread position: 31-165
Cow position: chr7:40263543-40263413 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 111
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 120, 25

Conread position: 31-165
Cow position: chr7:56557033-56556896 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 112
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 46, 0

Conread position: 31-167
Cow position: chr7:17750728-17750583 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 117
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 43, 142

Conread position: 31-167
Cow position: chr7:29345791-29345659 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 108
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 75, 0

Conread position: 31-168
Cow position: chr7:12495006-12494861 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 114
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 53, 0

Conread position: 31-170
Cow position: chr7:23671866-23672017 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 117
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 52, 0

Conread position: 31-173
Cow position: chr7:11796788-11796635 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 122
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 47, 0

Conread position: 31-178
Cow position: chr7:6044022-6043866 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 123
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 40, 0

Conread position: 32-149
Cow position: chr7:32436686-32436575 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 97
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 36, 0

Conread position: 32-149
Cow position: chr7:53053288-53053164 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 102
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 47, 0

Conread position: 33-151
Cow position: chr7:23679469-23679349 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 97
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 41, 0

Conread position: 33-154
Cow position: chr7:428666-428541 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 97
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 52, 0

Conread position: 33-174
Cow position: chr7:40344758-40344611 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 115
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 43, 141

Conread position: 34-153
Cow position: chr7:41374587-41374458 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 104
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 51, 0

Conread position: 35-168
Cow position: chr7:32285440-32285305 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 104
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 47, 0

Conread position: 36-145
Cow position: chr7:60161170-60161280 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 93
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 58, 0

Conread position: 37-189
Cow position: chr7:59503729-59503886 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 128
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 43, 125

Conread position: 40-172
Cow position: chr7:34098724-34098863 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 113
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 18, 122

Conread position: 43-150
Cow position: chr7:28428405-28428512 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 86
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 43-151
Cow position: chr7:18544261-18544147 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 93
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 44-148
Cow position: chr7:9092412-9092521 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 93
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 34, 0

Conread position: 58-175
Cow position: chr7:49290594-49290710 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 22, 0

Show alignments to all cow chromosomes.