Cow genome map

Conread name: Ss1.1-rpigcf0_006765.5

Conread position: 9-169
Cow position: chr8:32243665-32243827 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 120
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 11, 61

Conread position: 19-158
Cow position: chr8:12214087-12214218 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 108
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 12, 0

Conread position: 22-149
Cow position: chr8:48527887-48527754 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 108
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 51, 102

Conread position: 23-137
Cow position: chr8:6073741-6073622 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 96
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 51, 0

Conread position: 23-148
Cow position: chr8:59250804-59250933 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 106
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 52, 0

Conread position: 23-152
Cow position: chr8:5877718-5877852 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 111
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 92, 51

Conread position: 23-158
Cow position: chr8:53587245-53587105 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 114
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 87, 130

Conread position: 24-151
Cow position: chr8:61157154-61157019 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 53, 0

Conread position: 24-162
Cow position: chr8:53360163-53360028 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 107
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 50, 0

Conread position: 24-187
Cow position: chr8:19383746-19383586 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 118
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 32, 0

Conread position: 25-141
Cow position: chr8:19227002-19226886 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 96
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 25-141
Cow position: chr8:36375439-36375320 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 97
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 51, 0

Conread position: 25-145
Cow position: chr8:25640025-25639899 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 99
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 56, 0

Conread position: 25-145
Cow position: chr8:37443606-37443729 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 44, 0

Conread position: 25-149
Cow position: chr8:8714871-8714999 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 103
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 61, 76

Conread position: 25-149
Cow position: chr8:18728863-18728993 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 102
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 49, 0

Conread position: 25-149
Cow position: chr8:22947933-22947809 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 25-149
Cow position: chr8:35971926-35972059 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 108
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 55, 0

Conread position: 25-149
Cow position: chr8:55885050-55885182 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 108
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 55, 0

Conread position: 25-149
Cow position: chr8:56575382-56575504 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 99
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 60, 0

Conread position: 25-150
Cow position: chr8:19784935-19785069 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 25-150
Cow position: chr8:38711670-38711798 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 102
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 51, 0

Conread position: 25-151
Cow position: chr8:26315416-26315292 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 104
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 59, 0

Conread position: 25-151
Cow position: chr8:32133346-32133476 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 105
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 51, 0

Conread position: 25-151
Cow position: chr8:32854746-32854623 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 103
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 51, 0

Conread position: 25-151
Cow position: chr8:42762354-42762223 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 70, 122

Conread position: 25-151
Cow position: chr8:44568878-44569003 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 101
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 26, 60

Conread position: 25-151
Cow position: chr8:46082245-46082377 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 108
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 51, 0

Conread position: 25-151
Cow position: chr8:57218878-57219004 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 97
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 25-156
Cow position: chr8:5730109-5730247 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 113
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 49, 0

Conread position: 25-160
Cow position: chr8:54052385-54052516 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 112
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 59, 0

Conread position: 25-162
Cow position: chr8:23596686-23596548 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 114
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 57, 124

Conread position: 25-163
Cow position: chr8:51501209-51501065 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 112
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 54, 130

Conread position: 25-164
Cow position: chr8:27955074-27954923 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 122
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 60, 25

Conread position: 25-164
Cow position: chr8:32968152-32968290 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 115
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 60, 97

Conread position: 25-165
Cow position: chr8:10081979-10082111 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 111
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 52, 0

Conread position: 25-165
Cow position: chr8:16938391-16938256 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 108
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 25-165
Cow position: chr8:55089772-55089632 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 113
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 54, 96

Conread position: 25-166
Cow position: chr8:20850279-20850132 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 116
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 54, 101

Conread position: 25-167
Cow position: chr8:25349789-25349925 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 113
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 51, 0

Conread position: 25-174
Cow position: chr8:24970943-24971085 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 50, 0

Conread position: 25-176
Cow position: chr8:21775998-21776149 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 114
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 138, 97

Conread position: 25-206
Cow position: chr8:37635917-37635733 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 144
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 49, 129

Conread position: 26-145
Cow position: chr8:10336960-10336837 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 100
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 62, 0

Conread position: 26-148
Cow position: chr8:58393640-58393767 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 100
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 70, 0

Conread position: 26-151
Cow position: chr8:19860591-19860463 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 98
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 89, 0

Conread position: 26-175
Cow position: chr8:6271431-6271578 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 113
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 47, 0

Conread position: 29-151
Cow position: chr8:58636816-58636943 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 106
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 9, 0

Conread position: 31-145
Cow position: chr8:19717028-19716910 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 38, 0

Conread position: 31-149
Cow position: chr8:47707431-47707311 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 101
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 54, 19

Conread position: 31-150
Cow position: chr8:24419194-24419075 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 100
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 31-151
Cow position: chr8:5437848-5437973 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 101
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 38, 0

Conread position: 31-152
Cow position: chr8:517977-518091 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 100
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 37, 0

Conread position: 31-152
Cow position: chr8:37559215-37559337 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 100
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 55, 8

Conread position: 31-157
Cow position: chr8:38572186-38572052 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 109
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 54, 0

Conread position: 31-161
Cow position: chr8:20107708-20107575 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 114
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 43, 122

Conread position: 31-161
Cow position: chr8:23370227-23370097 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 109
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 119, 45

Conread position: 31-161
Cow position: chr8:49305667-49305526 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 115
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 43, 0

Conread position: 31-164
Cow position: chr8:1177799-1177659 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 107
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 52, 0

Conread position: 31-164
Cow position: chr8:35452655-35452798 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 113
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 39, 0

Conread position: 31-164
Cow position: chr8:44449521-44449381 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 15, 97

Conread position: 31-168
Cow position: chr8:47679591-47679735 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 113
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 54, 0

Conread position: 31-174
Cow position: chr8:40280765-40280921 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 122
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 51, 130

Conread position: 31-186
Cow position: chr8:61739590-61739432 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 122
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 49, 125

Conread position: 32-149
Cow position: chr8:55247508-55247384 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 103
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 46, 24

Conread position: 33-151
Cow position: chr8:60339834-60339716 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 98
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 33-161
Cow position: chr8:6160857-6160992 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 111
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 13, 124

Conread position: 34-150
Cow position: chr8:16957708-16957822 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 95
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 28, 0

Conread position: 34-165
Cow position: chr8:41722098-41721965 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 22, 0

Conread position: 43-152
Cow position: chr8:30428845-30428735 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 90
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 43, 19

Conread position: 43-161
Cow position: chr8:57041536-57041410 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 100
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 79-164
Cow position: chr8:4897096-4897183 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 77
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 74, 0

Show alignments to all cow chromosomes.