Cow genome map

Conread name: Ss1.1-rpigcf0_006765.5

Conread position: 11-163
Cow position: chr9:34399647-34399486 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 124
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 73, 16

Conread position: 13-151
Cow position: chr9:8066066-8066211 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 113
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 7, 0

Conread position: 18-149
Cow position: chr9:9403209-9403341 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 108
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 54, 109

Conread position: 22-143
Cow position: chr9:30123895-30123766 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 104
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 57, 0

Conread position: 22-153
Cow position: chr9:60036585-60036453 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 108
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 57, 0

Conread position: 23-145
Cow position: chr9:24079267-24079139 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 106
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 61, 0

Conread position: 23-148
Cow position: chr9:17872145-17872276 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 107
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 51, 0

Conread position: 23-149
Cow position: chr9:58614459-58614327 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 103
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 50, 0

Conread position: 23-151
Cow position: chr9:33151707-33151577 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 105
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 51, 0

Conread position: 23-152
Cow position: chr9:388227-388363 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 110
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 50, 0

Conread position: 23-160
Cow position: chr9:50606980-50607112 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 128, 44

Conread position: 23-169
Cow position: chr9:56453303-56453156 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 117
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 53, 31

Conread position: 23-170
Cow position: chr9:5186899-5187052 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 59, 39

Conread position: 23-188
Cow position: chr9:35591940-35591776 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 122
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 123, 60

Conread position: 24-167
Cow position: chr9:38792979-38792829 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 116
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 51, 138

Conread position: 25-145
Cow position: chr9:7805998-7806120 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 95
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 55, 0

Conread position: 25-145
Cow position: chr9:11873341-11873461 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 105
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 48, 95

Conread position: 25-145
Cow position: chr9:51720934-51721053 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 95
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 56, 0

Conread position: 25-146
Cow position: chr9:26394386-26394515 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 104
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 51, 0

Conread position: 25-148
Cow position: chr9:55807594-55807465 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 105
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 53, 0

Conread position: 25-149
Cow position: chr9:9516790-9516918 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 104
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 51, 0

Conread position: 25-149
Cow position: chr9:11380683-11380815 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 105
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 57, 0

Conread position: 25-149
Cow position: chr9:26493772-26493650 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 104
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 49, 0

Conread position: 25-149
Cow position: chr9:36628081-36627952 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 106
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 53, 31

Conread position: 25-150
Cow position: chr9:4257024-4257148 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 96
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 52, 0

Conread position: 25-150
Cow position: chr9:8628954-8629083 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 104
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 61, 0

Conread position: 25-150
Cow position: chr9:9459947-9459818 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 112
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 60, 0

Conread position: 25-150
Cow position: chr9:61847161-61847286 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 101
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 25-151
Cow position: chr9:3378717-3378590 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 97
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 61, 0

Conread position: 25-151
Cow position: chr9:4341196-4341328 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 106
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 56, 0

Conread position: 25-151
Cow position: chr9:5500816-5500692 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 100
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 43, 62

Conread position: 25-151
Cow position: chr9:8636630-8636506 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 99
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 47, 62

Conread position: 25-151
Cow position: chr9:20091009-20090888 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 103
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 43, 0

Conread position: 25-151
Cow position: chr9:32052239-32052104 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 110
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 60, 0

Conread position: 25-151
Cow position: chr9:33584722-33584856 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 55, 0

Conread position: 25-151
Cow position: chr9:34024662-34024527 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 25-151
Cow position: chr9:37199090-37198955 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 109
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 48, 0

Conread position: 25-151
Cow position: chr9:51620408-51620272 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 107
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 51, 0

Conread position: 25-151
Cow position: chr9:59897556-59897424 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 109
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 48, 0

Conread position: 25-152
Cow position: chr9:13670596-13670463 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 104
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 45, 0

Conread position: 25-152
Cow position: chr9:23970934-23971066 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 103
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 51, 0

Conread position: 25-157
Cow position: chr9:12337865-12337723 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 112
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 52, 139

Conread position: 25-158
Cow position: chr9:40984468-40984325 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 112
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 60, 0

Conread position: 25-161
Cow position: chr9:19555339-19555206 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 110
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 132, 43

Conread position: 25-161
Cow position: chr9:53109214-53109069 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 45, 0

Conread position: 25-165
Cow position: chr9:28747557-28747704 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 47, 0

Conread position: 25-165
Cow position: chr9:42586593-42586734 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 51, 0

Conread position: 25-165
Cow position: chr9:44918317-44918463 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 117
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 55, 135

Conread position: 25-165
Cow position: chr9:45141637-45141784 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 119
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 61, 0

Conread position: 25-165
Cow position: chr9:50382359-50382502 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 116
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 58, 77

Conread position: 25-165
Cow position: chr9:53120956-53120819 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 122
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 70, 0

Conread position: 25-166
Cow position: chr9:19718377-19718520 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 115
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 51, 125

Conread position: 25-167
Cow position: chr9:6192497-6192647 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 117
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 52, 37

Conread position: 25-167
Cow position: chr9:41728223-41728072 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 118
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 50, 0

Conread position: 25-168
Cow position: chr9:53762657-53762510 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 61, 0

Conread position: 25-169
Cow position: chr9:39654369-39654235 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 113
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 43, 0

Conread position: 25-169
Cow position: chr9:60395085-60395237 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 121
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 55, 132

Conread position: 25-174
Cow position: chr9:6237530-6237685 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 60, 0

Conread position: 25-175
Cow position: chr9:30194974-30194815 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 121
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 38, 0

Conread position: 25-175
Cow position: chr9:41363204-41363348 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 123
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 91, 60

Conread position: 25-187
Cow position: chr9:14519417-14519581 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 125
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 60, 130

Conread position: 26-145
Cow position: chr9:43159714-43159589 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 104
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 54, 99

Conread position: 26-151
Cow position: chr9:9595990-9596122 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 107
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 48, 0

Conread position: 26-152
Cow position: chr9:20847897-20847773 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 103
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 51, 97

Conread position: 26-165
Cow position: chr9:58452113-58452258 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 111
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 51, 0

Conread position: 28-161
Cow position: chr9:48115222-48115088 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 113
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 57, 0

Conread position: 30-145
Cow position: chr9:5441961-5441845 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 98
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 55, 82

Conread position: 31-149
Cow position: chr9:6634634-6634754 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 95
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 52, 0

Conread position: 31-149
Cow position: chr9:33248013-33248132 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 100
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 41, 80

Conread position: 31-149
Cow position: chr9:63361762-63361881 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 94
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 44, 0

Conread position: 31-150
Cow position: chr9:28773096-28772970 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 102
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 48, 87

Conread position: 31-151
Cow position: chr9:3387664-3387544 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 99
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 54, 43

Conread position: 31-151
Cow position: chr9:22114774-22114892 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 96
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 60, 0

Conread position: 31-161
Cow position: chr9:25556929-25556801 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 103
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 42, 47

Conread position: 31-161
Cow position: chr9:41785167-41785039 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 110
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 14, 0

Conread position: 31-163
Cow position: chr9:55256595-55256734 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 114
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 54, 0

Conread position: 31-168
Cow position: chr9:34286756-34286609 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 43, 0

Conread position: 31-170
Cow position: chr9:33101158-33101298 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 117
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 119, 43

Conread position: 31-203
Cow position: chr9:6189408-6189583 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 131
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 65, 147

Conread position: 32-143
Cow position: chr9:32773169-32773058 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 92
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 32-149
Cow position: chr9:6952057-6951942 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 96
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 52, 0

Conread position: 32-161
Cow position: chr9:11098496-11098633 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 116
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 37, 0

Conread position: 32-171
Cow position: chr9:1917935-1917788 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 41, 24

Conread position: 33-151
Cow position: chr9:20579639-20579760 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 101
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 38, 0

Conread position: 33-165
Cow position: chr9:61302955-61302817 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 108
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 48, 0

Conread position: 33-167
Cow position: chr9:58131998-58132136 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 112
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 35, 6

Conread position: 33-169
Cow position: chr9:3924397-3924264 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 110
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 105, 36

Conread position: 33-171
Cow position: chr9:4241359-4241211 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 118
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 52, 0

Conread position: 33-183
Cow position: chr9:42608723-42608577 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 123
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 114, 0

Conread position: 34-151
Cow position: chr9:22440525-22440645 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 97
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 42, 0

Conread position: 34-169
Cow position: chr9:40587013-40586880 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 104
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 120, 50

Conread position: 43-161
Cow position: chr9:61637372-61637253 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 100
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 33, 64

Conread position: 80-176
Cow position: chr9:20815765-20815671 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 85
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 94, 66

Show alignments to all cow chromosomes.