Cow genome map

Conread name: Ss1.1-rpigcf0_006765.5

Conread position: 6-155
Cow position: chrX:45502221-45502369 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 75, 17

Conread position: 22-167
Cow position: chrX:4399209-4399360 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 123
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 56, 140

Conread position: 23-151
Cow position: chrX:37072480-37072616 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 107
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 61, 0

Conread position: 23-151
Cow position: chrX:39352876-39353002 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 103
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 51, 0

Conread position: 23-164
Cow position: chrX:23359023-23358874 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 119
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 54, 0

Conread position: 24-152
Cow position: chrX:12979742-12979604 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 55, 0

Conread position: 25-135
Cow position: chrX:45517838-45517948 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 89
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 25-141
Cow position: chrX:11529436-11529558 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 60, 0

Conread position: 25-142
Cow position: chrX:31436567-31436690 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 100
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 55, 0

Conread position: 25-143
Cow position: chrX:25420424-25420546 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 105
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 57, 0

Conread position: 25-145
Cow position: chrX:1088050-1087924 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 100
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 60, 0

Conread position: 25-145
Cow position: chrX:14973653-14973533 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 92
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 25-145
Cow position: chrX:21986198-21986077 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 101
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 51, 0

Conread position: 25-149
Cow position: chrX:9201641-9201771 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 107
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 56, 0

Conread position: 25-149
Cow position: chrX:16984734-16984863 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 103
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 56, 19

Conread position: 25-149
Cow position: chrX:17525774-17525649 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 102
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 60, 96

Conread position: 25-149
Cow position: chrX:34314117-34314249 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 103
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 61, 0

Conread position: 25-149
Cow position: chrX:35029833-35029708 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 107
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 61, 114

Conread position: 25-149
Cow position: chrX:38727046-38726916 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 109
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 9, 78

Conread position: 25-149
Cow position: chrX:42875305-42875437 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 103
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 60, 0

Conread position: 25-150
Cow position: chrX:13177383-13177255 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 106
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 44, 99

Conread position: 25-150
Cow position: chrX:25232090-25232211 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 98
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 51, 0

Conread position: 25-151
Cow position: chrX:27415487-27415357 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 102
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 55, 83

Conread position: 25-152
Cow position: chrX:10252107-10251971 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 107
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 44, 0

Conread position: 25-152
Cow position: chrX:14135771-14135906 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 111
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 59, 0

Conread position: 25-152
Cow position: chrX:40556366-40556230 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 108
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 27, 0

Conread position: 25-153
Cow position: chrX:9252070-9251931 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 112
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 52, 0

Conread position: 25-153
Cow position: chrX:20710265-20710390 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 99
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 49, 0

Conread position: 25-154
Cow position: chrX:23471773-23471635 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 110
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 50, 0

Conread position: 25-155
Cow position: chrX:27306547-27306673 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 106
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 49, 0

Conread position: 25-155
Cow position: chrX:31279831-31279693 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 116
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 54, 0

Conread position: 25-158
Cow position: chrX:8925792-8925918 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 108
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 125, 29

Conread position: 25-161
Cow position: chrX:11326004-11325869 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 109
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 51, 16

Conread position: 25-161
Cow position: chrX:12437179-12437042 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 111
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 123, 0

Conread position: 25-161
Cow position: chrX:20583759-20583899 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 116
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 54, 101

Conread position: 25-161
Cow position: chrX:31480061-31480203 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 114
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 38, 127

Conread position: 25-163
Cow position: chrX:27668865-27668721 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 122
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 54, 87

Conread position: 25-163
Cow position: chrX:29682018-29681876 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 114
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 71, 29

Conread position: 25-164
Cow position: chrX:4289537-4289679 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 113
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 52, 0

Conread position: 25-164
Cow position: chrX:8869309-8869161 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 115
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 38, 0

Conread position: 25-164
Cow position: chrX:34367077-34367212 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 107
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 60, 0

Conread position: 25-164
Cow position: chrX:37176967-37177110 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 116
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 44, 97

Conread position: 25-164
Cow position: chrX:41453395-41453542 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 114
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 58, 0

Conread position: 25-166
Cow position: chrX:1466255-1466408 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 118
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 49, 0

Conread position: 25-169
Cow position: chrX:45429929-45429782 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 115
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 51, 117

Conread position: 25-170
Cow position: chrX:41215415-41215574 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 125
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 54, 0

Conread position: 25-171
Cow position: chrX:31744911-31744763 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 111
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 49, 66

Conread position: 25-172
Cow position: chrX:11656174-11656330 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 126
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 57, 0

Conread position: 25-175
Cow position: chrX:2936050-2936208 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 122
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 49, 0

Conread position: 25-176
Cow position: chrX:34991457-34991614 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 122
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 60, 137

Conread position: 25-178
Cow position: chrX:38560652-38560810 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 45, 0

Conread position: 25-179
Cow position: chrX:32866968-32867129 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 121
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 54, 0

Conread position: 25-182
Cow position: chrX:16836196-16836032 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 125
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 57, 0

Conread position: 25-183
Cow position: chrX:4152938-4152781 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 123
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 152, 59

Conread position: 25-184
Cow position: chrX:47855073-47855242 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 130
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 57, 129

Conread position: 25-201
Cow position: chrX:27145697-27145882 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 138
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 60, 0

Conread position: 26-145
Cow position: chrX:4486930-4486800 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 105
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 42, 0

Conread position: 26-147
Cow position: chrX:41871161-41871283 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 70, 50

Conread position: 26-149
Cow position: chrX:20584422-20584540 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 106
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 45, 0

Conread position: 26-149
Cow position: chrX:28940339-28940472 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 110
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 48, 0

Conread position: 26-149
Cow position: chrX:42479927-42480055 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 103
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 47, 104

Conread position: 26-203
Cow position: chrX:42216537-42216355 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 143
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 54, 128

Conread position: 29-149
Cow position: chrX:20666796-20666674 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 104
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 53, 0

Conread position: 31-136
Cow position: chrX:39419615-39419506 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 89
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 49, 0

Conread position: 31-137
Cow position: chrX:41192803-41192905 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 89
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 52, 0

Conread position: 31-148
Cow position: chrX:5487840-5487721 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 100
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 51, 0

Conread position: 31-149
Cow position: chrX:12972783-12972906 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 101
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 44, 0

Conread position: 31-149
Cow position: chrX:31442730-31442611 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 94
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 46, 0

Conread position: 31-149
Cow position: chrX:34504949-34504825 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 100
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 42, 17

Conread position: 31-149
Cow position: chrX:34792213-34792095 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 107
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 43, 33

Conread position: 31-149
Cow position: chrX:38964207-38964325 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 92
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 31-149
Cow position: chrX:41959853-41959975 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 96
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 50, 0

Conread position: 31-151
Cow position: chrX:6544353-6544475 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 43, 0

Conread position: 31-151
Cow position: chrX:23497592-23497467 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 103
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 53, 25

Conread position: 31-152
Cow position: chrX:39642524-39642397 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 106
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 49, 0

Conread position: 31-165
Cow position: chrX:1571490-1571351 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 106
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 45, 0

Conread position: 31-178
Cow position: chrX:45228580-45228730 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 110
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 31-206
Cow position: chrX:43059152-43058977 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 136
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 41, 125

Conread position: 32-151
Cow position: chrX:13892917-13893036 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 99
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 33-146
Cow position: chrX:4467068-4467176 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 97
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 35, 0

Conread position: 48-187
Cow position: chrX:38726064-38726203 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 104
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 124, 28

Conread position: 75-149
Cow position: chrX:33153669-33153743 (view UCSC Genome Browser custom track)
Alignm length: 75
Alignm identity: 69
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 75-161
Cow position: chrX:6559302-6559216 (view UCSC Genome Browser custom track)
Alignm length: 87
Alignm identity: 77
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 75-164
Cow position: chrX:12095617-12095528 (view UCSC Genome Browser custom track)
Alignm length: 90
Alignm identity: 77
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 76-174
Cow position: chrX:4615815-4615718 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 84
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 88, 0

Conread position: 78-169
Cow position: chrX:31983421-31983330 (view UCSC Genome Browser custom track)
Alignm length: 92
Alignm identity: 78
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.