Cow genome map
| Conread name: | Ss1.1-rpigcf0_007044.5 |
| Conread position: | 1-175 |
| Cow position: | chr29:17022323-17022157 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 1-207 |
| Cow position: | chr29:683317-683515 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 148, 47 |
| Conread position: | 1-356 |
| Cow position: | chr29:24252408-24252066 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 229, 64 |
| Conread position: | 1-360 |
| Cow position: | chr29:10156125-10156472 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 121 |
| Conread position: | 10-356 |
| Cow position: | chr29:6293307-6293648 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 30, 53 |
| Conread position: | 10-372 |
| Cow position: | chr29:749735-750091 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 201, 109 |
| Conread position: | 11-273 |
| Cow position: | chr29:847473-847730 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 119, 63 |
| Conread position: | 12-372 |
| Cow position: | chr29:20903121-20903472 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 254 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 41, 48 |
| Conread position: | 17-372 |
| Cow position: | chr29:40298857-40299197 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 263, 57 |
| Conread position: | 20-258 |
| Cow position: | chr29:38979914-38980145 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 13, 66 |
| Conread position: | 20-372 |
| Cow position: | chr29:30188195-30188525 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 279, 69 |
| Conread position: | 22-360 |
| Cow position: | chr29:4334876-4334550 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 222 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 129, 13 |
| Conread position: | 23-361 |
| Cow position: | chr29:13372820-13372490 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 217 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 67, 52 |
| Conread position: | 25-368 |
| Cow position: | chr29:23243723-23244064 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 51 |
| Conread position: | 25-370 |
| Cow position: | chr29:1022450-1022107 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 167, 67 |
| Conread position: | 25-372 |
| Cow position: | chr29:11562760-11562430 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 243 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 194, 49 |
| Conread position: | 26-372 |
| Cow position: | chr29:6844478-6844814 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 227 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 128, 48 |
| Conread position: | 28-370 |
| Cow position: | chr29:40097113-40096774 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 151, 20 |
| Conread position: | 29-372 |
| Cow position: | chr29:22175830-22175506 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 31-278 |
| Cow position: | chr29:2262848-2263091 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 192, 35 |
| Conread position: | 31-372 |
| Cow position: | chr29:22714577-22714912 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 295, 46 |
| Conread position: | 32-368 |
| Cow position: | chr29:32210924-32211240 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 294, 14 |
| Conread position: | 34-237 |
| Cow position: | chr29:23155375-23155174 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 44, 126 |
| Conread position: | 34-364 |
| Cow position: | chr29:9709846-9709518 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 231 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 36, 192 |
| Conread position: | 34-371 |
| Cow position: | chr29:8926315-8926642 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 42 |
| Conread position: | 35-369 |
| Cow position: | chr29:5186348-5186680 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 9 |
| Conread position: | 36-255 |
| Cow position: | chr29:23220356-23220573 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 183, 45 |
| Conread position: | 38-303 |
| Cow position: | chr29:13028582-13028319 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 163, 42 |
| Conread position: | 39-372 |
| Cow position: | chr29:26672772-26673090 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 227 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 57, 51 |
| Conread position: | 42-243 |
| Cow position: | chr29:21285497-21285300 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 42-372 |
| Cow position: | chr29:12783825-12784139 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 257, 37 |
| Conread position: | 42-372 |
| Cow position: | chr29:25088882-25088569 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 220 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 48, 35 |
| Conread position: | 43-272 |
| Cow position: | chr29:20770481-20770255 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 173, 33 |
| Conread position: | 44-334 |
| Cow position: | chr29:29314512-29314806 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 45-358 |
| Cow position: | chr29:17297271-17296961 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 254, 40 |
| Conread position: | 46-241 |
| Cow position: | chr29:30681575-30681769 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 46-255 |
| Cow position: | chr29:29324290-29324485 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 46-347 |
| Cow position: | chr29:34745525-34745821 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 165, 39 |
| Conread position: | 46-351 |
| Cow position: | chr29:32799577-32799879 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 180, 29 |
| Conread position: | 46-360 |
| Cow position: | chr29:21443204-21443521 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 46, 39 |
| Conread position: | 46-360 |
| Cow position: | chr29:45005493-45005799 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 224 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 174, 125 |
| Conread position: | 46-370 |
| Cow position: | chr29:5892981-5892664 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 224 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 198, 229 |
| Conread position: | 46-370 |
| Cow position: | chr29:17222549-17222226 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 44, 31 |
| Conread position: | 46-372 |
| Cow position: | chr29:16609882-16609553 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 211 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 144, 39 |
| Conread position: | 46-372 |
| Cow position: | chr29:31489456-31489135 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 212 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 28, 71 |
| Conread position: | 47-249 |
| Cow position: | chr29:40874145-40873943 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 169, 28 |
| Conread position: | 47-273 |
| Cow position: | chr29:26559111-26559330 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 59, 68 |
| Conread position: | 47-372 |
| Cow position: | chr29:28166088-28166402 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 61, 5 |
| Conread position: | 48-267 |
| Cow position: | chr29:18085706-18085486 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 168, 0 |
| Conread position: | 48-372 |
| Cow position: | chr29:19339133-19338795 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 235 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 102, 21 |
| Conread position: | 49-357 |
| Cow position: | chr29:9912310-9911999 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 5, 52 |
| Conread position: | 50-207 |
| Cow position: | chr29:22723731-22723576 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 50-247 |
| Cow position: | chr29:29923442-29923639 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 171, 106 |
| Conread position: | 50-249 |
| Cow position: | chr29:23825080-23825286 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 166, 30 |
| Conread position: | 50-356 |
| Cow position: | chr29:29769222-29769523 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 83, 24 |
| Conread position: | 50-362 |
| Cow position: | chr29:41530983-41530675 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 20, 67 |
| Conread position: | 50-367 |
| Cow position: | chr29:43099615-43099925 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 221 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 50-371 |
| Cow position: | chr29:29149801-29149482 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 208 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 66, 26 |
| Conread position: | 50-372 |
| Cow position: | chr29:2744137-2744456 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 18, 30 |
| Conread position: | 50-372 |
| Cow position: | chr29:17110087-17109787 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 234 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 50-372 |
| Cow position: | chr29:19949437-19949125 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 133, 26 |
| Conread position: | 50-372 |
| Cow position: | chr29:22690357-22690035 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 211 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 40, 50 |
| Conread position: | 50-372 |
| Cow position: | chr29:24624379-24624063 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 171, 34 |
| Conread position: | 50-372 |
| Cow position: | chr29:24952817-24952500 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 276, 73 |
| Conread position: | 50-372 |
| Cow position: | chr29:25092236-25091924 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 231 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 165, 25 |
| Conread position: | 50-372 |
| Cow position: | chr29:36530998-36530679 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 25 |
| Conread position: | 50-372 |
| Cow position: | chr29:40763564-40763869 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 67, 30 |
| Conread position: | 51-369 |
| Cow position: | chr29:23874589-23874278 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 34, 42 |
| Conread position: | 51-372 |
| Cow position: | chr29:38582097-38581783 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 65, 34 |
| Conread position: | 52-372 |
| Cow position: | chr29:21196520-21196835 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 13, 34 |
| Conread position: | 54-202 |
| Cow position: | chr29:7290902-7290756 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 54-202 |
| Cow position: | chr29:39038141-39038289 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 54-260 |
| Cow position: | chr29:28840282-28840077 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 168, 22 |
| Conread position: | 54-273 |
| Cow position: | chr29:21666216-21665998 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 26, 172 |
| Conread position: | 54-293 |
| Cow position: | chr29:1007948-1007707 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 168, 45 |
| Conread position: | 54-300 |
| Cow position: | chr29:5063275-5063032 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 28, 164 |
| Conread position: | 54-311 |
| Cow position: | chr29:34358852-34359107 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 22 |
| Conread position: | 54-324 |
| Cow position: | chr29:2056187-2055917 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 160, 34 |
| Conread position: | 54-347 |
| Cow position: | chr29:35292218-35291927 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 52, 12 |
| Conread position: | 54-353 |
| Cow position: | chr29:34773609-34773903 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 23 |
| Conread position: | 54-360 |
| Cow position: | chr29:13639240-13639544 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 54-369 |
| Cow position: | chr29:732743-732436 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 176, 29 |
| Conread position: | 54-371 |
| Cow position: | chr29:22613555-22613244 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 219 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 170, 44 |
| Conread position: | 54-372 |
| Cow position: | chr29:10839069-10838766 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 278, 88 |
| Conread position: | 54-372 |
| Cow position: | chr29:12680284-12679970 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 157 |
| Conread position: | 54-372 |
| Cow position: | chr29:16657823-16657500 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 127, 31 |
| Conread position: | 54-372 |
| Cow position: | chr29:31929113-31928797 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 167, 22 |
| Conread position: | 54-372 |
| Cow position: | chr29:40117697-40117384 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 229 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 163, 22 |
| Conread position: | 55-347 |
| Cow position: | chr29:10058413-10058699 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 133, 21 |
| Conread position: | 55-368 |
| Cow position: | chr29:4874755-4875077 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 19 |
| Conread position: | 55-372 |
| Cow position: | chr29:25737288-25737600 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 20 |
| Conread position: | 56-253 |
| Cow position: | chr29:41112757-41112944 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 56-366 |
| Cow position: | chr29:26275733-26275435 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 23, 5 |
| Conread position: | 56-370 |
| Cow position: | chr29:35501531-35501831 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 224 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 56-372 |
| Cow position: | chr29:1557055-1556748 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 220 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 57-270 |
| Cow position: | chr29:38978656-38978443 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 22, 62 |
| Conread position: | 57-372 |
| Cow position: | chr29:19762391-19762088 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 19 |
| Conread position: | 57-372 |
| Cow position: | chr29:32963660-32963370 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 269, 19 |
| Conread position: | 58-260 |
| Cow position: | chr29:30548898-30548697 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 162, 6 |
| Conread position: | 58-372 |
| Cow position: | chr29:39567802-39567503 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 59-216 |
| Cow position: | chr29:32197817-32197663 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 60-324 |
| Cow position: | chr29:39111192-39111455 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 8, 36 |
| Conread position: | 61-372 |
| Cow position: | chr29:4480054-4480360 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 265, 12 |
| Conread position: | 61-372 |
| Cow position: | chr29:36217233-36216933 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 221 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 62-314 |
| Cow position: | chr29:29176499-29176745 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 44, 13 |
| Conread position: | 62-321 |
| Cow position: | chr29:4003010-4002759 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 92, 13 |
| Conread position: | 63-365 |
| Cow position: | chr29:27589040-27588743 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 154, 17 |
| Conread position: | 65-249 |
| Cow position: | chr29:44139128-44139311 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 145, 9 |
| Conread position: | 66-372 |
| Cow position: | chr29:86896-87206 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 120, 33 |
| Conread position: | 66-372 |
| Cow position: | chr29:463536-463838 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 206 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 51, 200 |
| Conread position: | 66-372 |
| Cow position: | chr29:11053745-11054039 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 159, 10 |
| Conread position: | 70-372 |
| Cow position: | chr29:28195409-28195701 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 238, 100 |
| Conread position: | 72-372 |
| Cow position: | chr29:28196899-28197192 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 144, 27 |
| Conread position: | 78-372 |
| Cow position: | chr29:4520440-4520151 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 208 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 142, 78 |
| Conread position: | 81-372 |
| Cow position: | chr29:26778983-26778700 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 72, 87 |
| Conread position: | 84-372 |
| Cow position: | chr29:23983857-23984147 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 75 |
| Conread position: | 85-262 |
| Cow position: | chr29:18012655-18012476 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 85-323 |
| Cow position: | chr29:27329989-27329753 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 175 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 85-356 |
| Cow position: | chr29:27826617-27826353 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 106, 61 |
| Conread position: | 85-370 |
| Cow position: | chr29:15940535-15940819 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 116, 13 |
| Conread position: | 85-372 |
| Cow position: | chr29:22162152-22162435 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 243 |
| Conread position: | 89-368 |
| Cow position: | chr29:10235041-10235310 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 111, 67 |
| Conread position: | 99-287 |
| Cow position: | chr29:24578946-24578755 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 99-371 |
| Cow position: | chr29:43009001-43009268 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 198 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 99-372 |
| Cow position: | chr29:42363932-42364203 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 38, 104 |
| Conread position: | 100-360 |
| Cow position: | chr29:44682022-44682273 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 110-368 |
| Cow position: | chr29:43328716-43328458 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 111, 228 |
| Conread position: | 110-372 |
| Cow position: | chr29:1229679-1229424 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 122, 83 |
| Conread position: | 110-372 |
| Cow position: | chr29:5098694-5098946 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 110-372 |
| Cow position: | chr29:17409407-17409146 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 194, 100 |
| Conread position: | 110-372 |
| Cow position: | chr29:17607490-17607232 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 106, 148 |
| Conread position: | 110-372 |
| Cow position: | chr29:22778104-22778366 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 189, 37 |
| Conread position: | 110-372 |
| Cow position: | chr29:40166316-40166058 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 100, 143 |
| Conread position: | 111-324 |
| Cow position: | chr29:10456494-10456699 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 114-372 |
| Cow position: | chr29:17668555-17668311 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 225, 52 |
| Conread position: | 114-372 |
| Cow position: | chr29:26615652-26615909 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 223 |
| Conread position: | 116-299 |
| Cow position: | chr29:27846530-27846354 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 101, 80 |
| Conread position: | 119-244 |
| Cow position: | chr29:31477050-31477177 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 119-349 |
| Cow position: | chr29:31674696-31674465 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 177 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 104, 135 |
| Conread position: | 119-372 |
| Cow position: | chr29:3100204-3100446 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 183, 81 |
| Conread position: | 119-372 |
| Cow position: | chr29:9718709-9718957 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 98, 32 |
| Conread position: | 119-372 |
| Cow position: | chr29:14501656-14501406 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 185, 152 |
| Conread position: | 119-372 |
| Cow position: | chr29:20428901-20429157 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 40, 125 |
| Conread position: | 120-356 |
| Cow position: | chr29:4367788-4367548 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 93, 115 |
| Conread position: | 120-372 |
| Cow position: | chr29:24103479-24103733 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 194 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 120-372 |
| Cow position: | chr29:29975100-29974856 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 187 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 208, 86 |
| Conread position: | 122-372 |
| Cow position: | chr29:22585341-22585592 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 150, 89 |
| Conread position: | 131-368 |
| Cow position: | chr29:11135845-11136071 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 91, 36 |
| Conread position: | 138-347 |
| Cow position: | chr29:1124699-1124492 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 188, 79 |
| Conread position: | 138-347 |
| Cow position: | chr29:42849269-42849060 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 64, 57 |
| Conread position: | 148-323 |
| Cow position: | chr29:31594093-31594269 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 148-372 |
| Cow position: | chr29:28446215-28446444 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 69, 35 |
| Conread position: | 167-372 |
| Cow position: | chr29:28507122-28506916 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 57, 44 |
| Conread position: | 170-372 |
| Cow position: | chr29:2623467-2623664 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 45, 103 |
| Conread position: | 171-372 |
| Cow position: | chr29:2533070-2532877 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 169, 41 |
| Conread position: | 175-372 |
| Cow position: | chr29:26735036-26734849 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 178-372 |
| Cow position: | chr29:10818430-10818621 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 148, 34 |
| Conread position: | 185-372 |
| Cow position: | chr29:8125591-8125779 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 35, 142 |
| Conread position: | 206-370 |
| Cow position: | chr29:21000619-21000457 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 120, 21 |
| Conread position: | 218-357 |
| Cow position: | chr29:19125309-19125170 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 110, 120 |
Show alignments to all cow chromosomes.