Cow genome map
| Conread name: | Ss1.1-rpigcf0_007044.5 | 
| Conread position: | 1-191 | 
| Cow position: | chr6:54349915-54349727 (view UCSC Genome Browser custom track) | 
| Alignm length: | 192 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 5e-28 | 
| Alignm gaps (pig, cow): | 54, 21 | 
| Conread position: | 1-372 | 
| Cow position: | chr6:9452544-9452916 (view UCSC Genome Browser custom track) | 
| Alignm length: | 378 | 
| Alignm identity: | 262 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 59, 260 | 
| Conread position: | 3-231 | 
| Cow position: | chr6:1002046-1002269 (view UCSC Genome Browser custom track) | 
| Alignm length: | 229 | 
| Alignm identity: | 160 | 
| Alignm E-value: | 6e-30 | 
| Alignm gaps (pig, cow): | 60, 0 | 
| Conread position: | 6-311 | 
| Cow position: | chr6:51969285-51968981 (view UCSC Genome Browser custom track) | 
| Alignm length: | 315 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 4e-27 | 
| Alignm gaps (pig, cow): | 229, 36 | 
| Conread position: | 7-370 | 
| Cow position: | chr6:38610177-38609823 (view UCSC Genome Browser custom track) | 
| Alignm length: | 366 | 
| Alignm identity: | 235 | 
| Alignm E-value: | 5e-29 | 
| Alignm gaps (pig, cow): | 99, 31 | 
| Conread position: | 8-268 | 
| Cow position: | chr6:55535538-55535792 (view UCSC Genome Browser custom track) | 
| Alignm length: | 262 | 
| Alignm identity: | 175 | 
| Alignm E-value: | 1e-26 | 
| Alignm gaps (pig, cow): | 224, 66 | 
| Conread position: | 9-364 | 
| Cow position: | chr6:58074263-58073909 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 4e-26 | 
| Alignm gaps (pig, cow): | 24, 14 | 
| Conread position: | 9-371 | 
| Cow position: | chr6:6343648-6343284 (view UCSC Genome Browser custom track) | 
| Alignm length: | 374 | 
| Alignm identity: | 257 | 
| Alignm E-value: | 6.99949e-42 | 
| Alignm gaps (pig, cow): | 71, 207 | 
| Conread position: | 10-255 | 
| Cow position: | chr6:35964323-35964564 (view UCSC Genome Browser custom track) | 
| Alignm length: | 250 | 
| Alignm identity: | 172 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 141, 70 | 
| Conread position: | 10-345 | 
| Cow position: | chr6:47799509-47799171 (view UCSC Genome Browser custom track) | 
| Alignm length: | 341 | 
| Alignm identity: | 225 | 
| Alignm E-value: | 4e-36 | 
| Alignm gaps (pig, cow): | 10, 236 | 
| Conread position: | 10-348 | 
| Cow position: | chr6:66531608-66531941 (view UCSC Genome Browser custom track) | 
| Alignm length: | 339 | 
| Alignm identity: | 230 | 
| Alignm E-value: | 2.94273e-44 | 
| Alignm gaps (pig, cow): | 132, 0 | 
| Conread position: | 10-372 | 
| Cow position: | chr6:54990786-54991145 (view UCSC Genome Browser custom track) | 
| Alignm length: | 368 | 
| Alignm identity: | 263 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 47, 220 | 
| Conread position: | 11-191 | 
| Cow position: | chr6:21066672-21066851 (view UCSC Genome Browser custom track) | 
| Alignm length: | 182 | 
| Alignm identity: | 127 | 
| Alignm E-value: | 8e-23 | 
| Alignm gaps (pig, cow): | 156, 65 | 
| Conread position: | 12-268 | 
| Cow position: | chr6:222253-222493 (view UCSC Genome Browser custom track) | 
| Alignm length: | 257 | 
| Alignm identity: | 183 | 
| Alignm E-value: | 2e-30 | 
| Alignm gaps (pig, cow): | 9, 0 | 
| Conread position: | 12-370 | 
| Cow position: | chr6:14958125-14958490 (view UCSC Genome Browser custom track) | 
| Alignm length: | 368 | 
| Alignm identity: | 249 | 
| Alignm E-value: | 2.99878e-43 | 
| Alignm gaps (pig, cow): | 48, 230 | 
| Conread position: | 13-372 | 
| Cow position: | chr6:8209395-8209732 (view UCSC Genome Browser custom track) | 
| Alignm length: | 361 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 8.00141e-43 | 
| Alignm gaps (pig, cow): | 54, 65 | 
| Conread position: | 15-327 | 
| Cow position: | chr6:16764439-16764754 (view UCSC Genome Browser custom track) | 
| Alignm length: | 325 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 8e-23 | 
| Alignm gaps (pig, cow): | 91, 59 | 
| Conread position: | 15-371 | 
| Cow position: | chr6:60057452-60057798 (view UCSC Genome Browser custom track) | 
| Alignm length: | 360 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 5e-29 | 
| Alignm gaps (pig, cow): | 290, 70 | 
| Conread position: | 15-372 | 
| Cow position: | chr6:59069413-59069771 (view UCSC Genome Browser custom track) | 
| Alignm length: | 365 | 
| Alignm identity: | 242 | 
| Alignm E-value: | 4e-37 | 
| Alignm gaps (pig, cow): | 104, 58 | 
| Conread position: | 16-246 | 
| Cow position: | chr6:53090217-53089986 (view UCSC Genome Browser custom track) | 
| Alignm length: | 234 | 
| Alignm identity: | 164 | 
| Alignm E-value: | 6e-31 | 
| Alignm gaps (pig, cow): | 40, 32 | 
| Conread position: | 17-372 | 
| Cow position: | chr6:37199333-37199682 (view UCSC Genome Browser custom track) | 
| Alignm length: | 364 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 3e-24 | 
| Alignm gaps (pig, cow): | 205, 63 | 
| Conread position: | 21-372 | 
| Cow position: | chr6:416314-415951 (view UCSC Genome Browser custom track) | 
| Alignm length: | 367 | 
| Alignm identity: | 242 | 
| Alignm E-value: | 2e-31 | 
| Alignm gaps (pig, cow): | 55, 82 | 
| Conread position: | 21-372 | 
| Cow position: | chr6:20097756-20098107 (view UCSC Genome Browser custom track) | 
| Alignm length: | 356 | 
| Alignm identity: | 226 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 189, 310 | 
| Conread position: | 22-155 | 
| Cow position: | chr6:47676213-47676082 (view UCSC Genome Browser custom track) | 
| Alignm length: | 134 | 
| Alignm identity: | 101 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 9, 0 | 
| Conread position: | 23-370 | 
| Cow position: | chr6:21869448-21869786 (view UCSC Genome Browser custom track) | 
| Alignm length: | 350 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 2e-39 | 
| Alignm gaps (pig, cow): | 67, 62 | 
| Conread position: | 24-304 | 
| Cow position: | chr6:23465836-23466108 (view UCSC Genome Browser custom track) | 
| Alignm length: | 281 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 6, 0 | 
| Conread position: | 25-372 | 
| Cow position: | chr6:35993782-35993434 (view UCSC Genome Browser custom track) | 
| Alignm length: | 355 | 
| Alignm identity: | 242 | 
| Alignm E-value: | 6.99949e-42 | 
| Alignm gaps (pig, cow): | 208, 74 | 
| Conread position: | 28-367 | 
| Cow position: | chr6:67456912-67456571 (view UCSC Genome Browser custom track) | 
| Alignm length: | 351 | 
| Alignm identity: | 224 | 
| Alignm E-value: | 7e-22 | 
| Alignm gaps (pig, cow): | 209, 57 | 
| Conread position: | 32-181 | 
| Cow position: | chr6:28900516-28900369 (view UCSC Genome Browser custom track) | 
| Alignm length: | 150 | 
| Alignm identity: | 113 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 44, 0 | 
| Conread position: | 32-346 | 
| Cow position: | chr6:7130688-7130998 (view UCSC Genome Browser custom track) | 
| Alignm length: | 324 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 3e-23 | 
| Alignm gaps (pig, cow): | 132, 248 | 
| Conread position: | 34-347 | 
| Cow position: | chr6:66131492-66131181 (view UCSC Genome Browser custom track) | 
| Alignm length: | 319 | 
| Alignm identity: | 208 | 
| Alignm E-value: | 4e-27 | 
| Alignm gaps (pig, cow): | 208, 55 | 
| Conread position: | 34-366 | 
| Cow position: | chr6:26728347-26728667 (view UCSC Genome Browser custom track) | 
| Alignm length: | 335 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 6e-40 | 
| Alignm gaps (pig, cow): | 238, 22 | 
| Conread position: | 34-372 | 
| Cow position: | chr6:7989231-7989559 (view UCSC Genome Browser custom track) | 
| Alignm length: | 347 | 
| Alignm identity: | 228 | 
| Alignm E-value: | 3e-23 | 
| Alignm gaps (pig, cow): | 16, 36 | 
| Conread position: | 35-293 | 
| Cow position: | chr6:9302533-9302784 (view UCSC Genome Browser custom track) | 
| Alignm length: | 261 | 
| Alignm identity: | 182 | 
| Alignm E-value: | 2e-30 | 
| Alignm gaps (pig, cow): | 237, 48 | 
| Conread position: | 36-372 | 
| Cow position: | chr6:4691792-4692127 (view UCSC Genome Browser custom track) | 
| Alignm length: | 342 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 1e-26 | 
| Alignm gaps (pig, cow): | 179, 13 | 
| Conread position: | 36-372 | 
| Cow position: | chr6:46282819-46283141 (view UCSC Genome Browser custom track) | 
| Alignm length: | 340 | 
| Alignm identity: | 248 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 174, 24 | 
| Conread position: | 37-372 | 
| Cow position: | chr6:67214936-67214598 (view UCSC Genome Browser custom track) | 
| Alignm length: | 344 | 
| Alignm identity: | 231 | 
| Alignm E-value: | 3e-35 | 
| Alignm gaps (pig, cow): | 14, 33 | 
| Conread position: | 38-255 | 
| Cow position: | chr6:60265995-60266212 (view UCSC Genome Browser custom track) | 
| Alignm length: | 221 | 
| Alignm identity: | 156 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 25, 158 | 
| Conread position: | 38-259 | 
| Cow position: | chr6:49437517-49437298 (view UCSC Genome Browser custom track) | 
| Alignm length: | 222 | 
| Alignm identity: | 155 | 
| Alignm E-value: | 6e-31 | 
| Alignm gaps (pig, cow): | 36, 0 | 
| Conread position: | 39-254 | 
| Cow position: | chr6:19259156-19259374 (view UCSC Genome Browser custom track) | 
| Alignm length: | 219 | 
| Alignm identity: | 153 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 15, 0 | 
| Conread position: | 39-372 | 
| Cow position: | chr6:5095359-5095693 (view UCSC Genome Browser custom track) | 
| Alignm length: | 341 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 139, 46 | 
| Conread position: | 39-372 | 
| Cow position: | chr6:21456501-21456833 (view UCSC Genome Browser custom track) | 
| Alignm length: | 340 | 
| Alignm identity: | 241 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 16, 65 | 
| Conread position: | 41-370 | 
| Cow position: | chr6:38207313-38207636 (view UCSC Genome Browser custom track) | 
| Alignm length: | 334 | 
| Alignm identity: | 239 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 53, 24 | 
| Conread position: | 42-307 | 
| Cow position: | chr6:12091813-12092075 (view UCSC Genome Browser custom track) | 
| Alignm length: | 268 | 
| Alignm identity: | 177 | 
| Alignm E-value: | 3e-25 | 
| Alignm gaps (pig, cow): | 51, 12 | 
| Conread position: | 42-347 | 
| Cow position: | chr6:10225477-10225761 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 3e-24 | 
| Alignm gaps (pig, cow): | 283, 35 | 
| Conread position: | 42-365 | 
| Cow position: | chr6:15243435-15243116 (view UCSC Genome Browser custom track) | 
| Alignm length: | 325 | 
| Alignm identity: | 231 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 284, 34 | 
| Conread position: | 42-372 | 
| Cow position: | chr6:38641675-38641355 (view UCSC Genome Browser custom track) | 
| Alignm length: | 334 | 
| Alignm identity: | 228 | 
| Alignm E-value: | 1e-36 | 
| Alignm gaps (pig, cow): | 42, 108 | 
| Conread position: | 42-372 | 
| Cow position: | chr6:67951129-67950816 (view UCSC Genome Browser custom track) | 
| Alignm length: | 333 | 
| Alignm identity: | 226 | 
| Alignm E-value: | 2e-32 | 
| Alignm gaps (pig, cow): | 180, 34 | 
| Conread position: | 43-356 | 
| Cow position: | chr6:38441352-38441051 (view UCSC Genome Browser custom track) | 
| Alignm length: | 316 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 4e-27 | 
| Alignm gaps (pig, cow): | 12, 56 | 
| Conread position: | 43-370 | 
| Cow position: | chr6:47520234-47519905 (view UCSC Genome Browser custom track) | 
| Alignm length: | 331 | 
| Alignm identity: | 222 | 
| Alignm E-value: | 5.99994e-41 | 
| Alignm gaps (pig, cow): | 174, 285 | 
| Conread position: | 43-372 | 
| Cow position: | chr6:64432116-64431796 (view UCSC Genome Browser custom track) | 
| Alignm length: | 332 | 
| Alignm identity: | 212 | 
| Alignm E-value: | 9e-24 | 
| Alignm gaps (pig, cow): | 108, 9 | 
| Conread position: | 46-324 | 
| Cow position: | chr6:14914060-14914344 (view UCSC Genome Browser custom track) | 
| Alignm length: | 289 | 
| Alignm identity: | 188 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 34, 47 | 
| Conread position: | 46-333 | 
| Cow position: | chr6:17794588-17794864 (view UCSC Genome Browser custom track) | 
| Alignm length: | 289 | 
| Alignm identity: | 195 | 
| Alignm E-value: | 5e-29 | 
| Alignm gaps (pig, cow): | 253, 29 | 
| Conread position: | 46-353 | 
| Cow position: | chr6:62670043-62669746 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 199 | 
| Alignm E-value: | 3e-25 | 
| Alignm gaps (pig, cow): | 163, 0 | 
| Conread position: | 46-357 | 
| Cow position: | chr6:53841330-53841631 (view UCSC Genome Browser custom track) | 
| Alignm length: | 312 | 
| Alignm identity: | 201 | 
| Alignm E-value: | 4e-26 | 
| Alignm gaps (pig, cow): | 34, 0 | 
| Conread position: | 46-368 | 
| Cow position: | chr6:16423882-16423560 (view UCSC Genome Browser custom track) | 
| Alignm length: | 329 | 
| Alignm identity: | 238 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 25, 36 | 
| Conread position: | 46-370 | 
| Cow position: | chr6:54365156-54365469 (view UCSC Genome Browser custom track) | 
| Alignm length: | 327 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 7e-32 | 
| Alignm gaps (pig, cow): | 168, 34 | 
| Conread position: | 46-372 | 
| Cow position: | chr6:5609271-5609583 (view UCSC Genome Browser custom track) | 
| Alignm length: | 327 | 
| Alignm identity: | 226 | 
| Alignm E-value: | 2e-40 | 
| Alignm gaps (pig, cow): | 23, 0 | 
| Conread position: | 46-372 | 
| Cow position: | chr6:15243012-15242689 (view UCSC Genome Browser custom track) | 
| Alignm length: | 330 | 
| Alignm identity: | 218 | 
| Alignm E-value: | 3e-34 | 
| Alignm gaps (pig, cow): | 129, 34 | 
| Conread position: | 46-372 | 
| Cow position: | chr6:17313911-17313587 (view UCSC Genome Browser custom track) | 
| Alignm length: | 330 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 6e-30 | 
| Alignm gaps (pig, cow): | 165, 72 | 
| Conread position: | 46-372 | 
| Cow position: | chr6:61631432-61631756 (view UCSC Genome Browser custom track) | 
| Alignm length: | 331 | 
| Alignm identity: | 212 | 
| Alignm E-value: | 4e-26 | 
| Alignm gaps (pig, cow): | 60, 33 | 
| Conread position: | 47-299 | 
| Cow position: | chr6:17068472-17068723 (view UCSC Genome Browser custom track) | 
| Alignm length: | 253 | 
| Alignm identity: | 175 | 
| Alignm E-value: | 4e-36 | 
| Alignm gaps (pig, cow): | 28, 0 | 
| Conread position: | 47-327 | 
| Cow position: | chr6:61269487-61269207 (view UCSC Genome Browser custom track) | 
| Alignm length: | 283 | 
| Alignm identity: | 202 | 
| Alignm E-value: | 8.40779e-45 | 
| Alignm gaps (pig, cow): | 164, 38 | 
| Conread position: | 47-372 | 
| Cow position: | chr6:20157508-20157182 (view UCSC Genome Browser custom track) | 
| Alignm length: | 333 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 9e-24 | 
| Alignm gaps (pig, cow): | 43, 27 | 
| Conread position: | 47-372 | 
| Cow position: | chr6:23696175-23695854 (view UCSC Genome Browser custom track) | 
| Alignm length: | 332 | 
| Alignm identity: | 231 | 
| Alignm E-value: | 1.99965e-42 | 
| Alignm gaps (pig, cow): | 162, 29 | 
| Conread position: | 48-324 | 
| Cow position: | chr6:61524031-61524300 (view UCSC Genome Browser custom track) | 
| Alignm length: | 278 | 
| Alignm identity: | 200 | 
| Alignm E-value: | 8.00141e-43 | 
| Alignm gaps (pig, cow): | 161, 28 | 
| Conread position: | 49-294 | 
| Cow position: | chr6:50504631-50504388 (view UCSC Genome Browser custom track) | 
| Alignm length: | 248 | 
| Alignm identity: | 169 | 
| Alignm E-value: | 2e-28 | 
| Alignm gaps (pig, cow): | 167, 211 | 
| Conread position: | 49-366 | 
| Cow position: | chr6:54867692-54867375 (view UCSC Genome Browser custom track) | 
| Alignm length: | 321 | 
| Alignm identity: | 215 | 
| Alignm E-value: | 4e-38 | 
| Alignm gaps (pig, cow): | 170, 280 | 
| Conread position: | 50-221 | 
| Cow position: | chr6:58725540-58725373 (view UCSC Genome Browser custom track) | 
| Alignm length: | 172 | 
| Alignm identity: | 124 | 
| Alignm E-value: | 3e-23 | 
| Alignm gaps (pig, cow): | 25, 0 | 
| Conread position: | 50-266 | 
| Cow position: | chr6:60516997-60516786 (view UCSC Genome Browser custom track) | 
| Alignm length: | 217 | 
| Alignm identity: | 150 | 
| Alignm E-value: | 4e-26 | 
| Alignm gaps (pig, cow): | 30, 0 | 
| Conread position: | 50-277 | 
| Cow position: | chr6:60144026-60144251 (view UCSC Genome Browser custom track) | 
| Alignm length: | 229 | 
| Alignm identity: | 160 | 
| Alignm E-value: | 6e-31 | 
| Alignm gaps (pig, cow): | 152, 30 | 
| Conread position: | 50-293 | 
| Cow position: | chr6:18117878-18118120 (view UCSC Genome Browser custom track) | 
| Alignm length: | 246 | 
| Alignm identity: | 171 | 
| Alignm E-value: | 8e-33 | 
| Alignm gaps (pig, cow): | 169, 37 | 
| Conread position: | 50-294 | 
| Cow position: | chr6:67643516-67643760 (view UCSC Genome Browser custom track) | 
| Alignm length: | 249 | 
| Alignm identity: | 179 | 
| Alignm E-value: | 3e-35 | 
| Alignm gaps (pig, cow): | 13, 66 | 
| Conread position: | 50-300 | 
| Cow position: | chr6:693972-694222 (view UCSC Genome Browser custom track) | 
| Alignm length: | 258 | 
| Alignm identity: | 181 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 58, 25 | 
| Conread position: | 50-314 | 
| Cow position: | chr6:25614917-25615193 (view UCSC Genome Browser custom track) | 
| Alignm length: | 277 | 
| Alignm identity: | 194 | 
| Alignm E-value: | 4e-36 | 
| Alignm gaps (pig, cow): | 80, 0 | 
| Conread position: | 50-358 | 
| Cow position: | chr6:54132986-54132684 (view UCSC Genome Browser custom track) | 
| Alignm length: | 315 | 
| Alignm identity: | 225 | 
| Alignm E-value: | 6.99949e-42 | 
| Alignm gaps (pig, cow): | 18, 28 | 
| Conread position: | 50-360 | 
| Cow position: | chr6:36202994-36202692 (view UCSC Genome Browser custom track) | 
| Alignm length: | 316 | 
| Alignm identity: | 224 | 
| Alignm E-value: | 6e-40 | 
| Alignm gaps (pig, cow): | 19, 95 | 
| Conread position: | 50-370 | 
| Cow position: | chr6:48010353-48010666 (view UCSC Genome Browser custom track) | 
| Alignm length: | 323 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 7e-22 | 
| Alignm gaps (pig, cow): | 70, 56 | 
| Conread position: | 50-371 | 
| Cow position: | chr6:323129-323451 (view UCSC Genome Browser custom track) | 
| Alignm length: | 330 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 32, 42 | 
| Conread position: | 50-371 | 
| Cow position: | chr6:67617773-67618101 (view UCSC Genome Browser custom track) | 
| Alignm length: | 330 | 
| Alignm identity: | 207 | 
| Alignm E-value: | 3e-23 | 
| Alignm gaps (pig, cow): | 49, 41 | 
| Conread position: | 50-372 | 
| Cow position: | chr6:2547428-2547097 (view UCSC Genome Browser custom track) | 
| Alignm length: | 334 | 
| Alignm identity: | 244 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 168, 25 | 
| Conread position: | 50-372 | 
| Cow position: | chr6:6965221-6965528 (view UCSC Genome Browser custom track) | 
| Alignm length: | 328 | 
| Alignm identity: | 222 | 
| Alignm E-value: | 1e-27 | 
| Alignm gaps (pig, cow): | 29, 79 | 
| Conread position: | 50-372 | 
| Cow position: | chr6:7128233-7128543 (view UCSC Genome Browser custom track) | 
| Alignm length: | 326 | 
| Alignm identity: | 229 | 
| Alignm E-value: | 1.99993e-41 | 
| Alignm gaps (pig, cow): | 165, 9 | 
| Conread position: | 50-372 | 
| Cow position: | chr6:48112369-48112061 (view UCSC Genome Browser custom track) | 
| Alignm length: | 323 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 28, 0 | 
| Conread position: | 50-372 | 
| Cow position: | chr6:50984398-50984081 (view UCSC Genome Browser custom track) | 
| Alignm length: | 329 | 
| Alignm identity: | 220 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 24, 42 | 
| Conread position: | 50-372 | 
| Cow position: | chr6:51581082-51581400 (view UCSC Genome Browser custom track) | 
| Alignm length: | 326 | 
| Alignm identity: | 245 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 167, 49 | 
| Conread position: | 50-372 | 
| Cow position: | chr6:52478238-52478570 (view UCSC Genome Browser custom track) | 
| Alignm length: | 335 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 171, 27 | 
| Conread position: | 50-372 | 
| Cow position: | chr6:65871208-65870881 (view UCSC Genome Browser custom track) | 
| Alignm length: | 332 | 
| Alignm identity: | 240 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 156, 30 | 
| Conread position: | 51-202 | 
| Cow position: | chr6:12761449-12761301 (view UCSC Genome Browser custom track) | 
| Alignm length: | 152 | 
| Alignm identity: | 111 | 
| Alignm E-value: | 7e-22 | 
| Alignm gaps (pig, cow): | 25, 0 | 
| Conread position: | 51-270 | 
| Cow position: | chr6:3351201-3350974 (view UCSC Genome Browser custom track) | 
| Alignm length: | 228 | 
| Alignm identity: | 166 | 
| Alignm E-value: | 3e-35 | 
| Alignm gaps (pig, cow): | 159, 0 | 
| Conread position: | 51-345 | 
| Cow position: | chr6:35842828-35842530 (view UCSC Genome Browser custom track) | 
| Alignm length: | 305 | 
| Alignm identity: | 202 | 
| Alignm E-value: | 3e-25 | 
| Alignm gaps (pig, cow): | 55, 41 | 
| Conread position: | 51-355 | 
| Cow position: | chr6:61168928-61168645 (view UCSC Genome Browser custom track) | 
| Alignm length: | 306 | 
| Alignm identity: | 207 | 
| Alignm E-value: | 4e-27 | 
| Alignm gaps (pig, cow): | 291, 148 | 
| Conread position: | 51-372 | 
| Cow position: | chr6:49421618-49421922 (view UCSC Genome Browser custom track) | 
| Alignm length: | 323 | 
| Alignm identity: | 214 | 
| Alignm E-value: | 1e-27 | 
| Alignm gaps (pig, cow): | 33, 96 | 
| Conread position: | 51-372 | 
| Cow position: | chr6:52413030-52412711 (view UCSC Genome Browser custom track) | 
| Alignm length: | 329 | 
| Alignm identity: | 215 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 35, 22 | 
| Conread position: | 52-372 | 
| Cow position: | chr6:63093741-63094072 (view UCSC Genome Browser custom track) | 
| Alignm length: | 339 | 
| Alignm identity: | 230 | 
| Alignm E-value: | 1e-27 | 
| Alignm gaps (pig, cow): | 21, 39 | 
| Conread position: | 53-371 | 
| Cow position: | chr6:528114-528419 (view UCSC Genome Browser custom track) | 
| Alignm length: | 321 | 
| Alignm identity: | 216 | 
| Alignm E-value: | 2e-31 | 
| Alignm gaps (pig, cow): | 37, 22 | 
| Conread position: | 54-212 | 
| Cow position: | chr6:30024053-30023897 (view UCSC Genome Browser custom track) | 
| Alignm length: | 159 | 
| Alignm identity: | 113 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 22, 0 | 
| Conread position: | 54-242 | 
| Cow position: | chr6:4702649-4702842 (view UCSC Genome Browser custom track) | 
| Alignm length: | 195 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 9e-24 | 
| Alignm gaps (pig, cow): | 25, 110 | 
| Conread position: | 54-246 | 
| Cow position: | chr6:21293327-21293518 (view UCSC Genome Browser custom track) | 
| Alignm length: | 196 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 9e-24 | 
| Alignm gaps (pig, cow): | 114, 68 | 
| Conread position: | 54-249 | 
| Cow position: | chr6:63065994-63065800 (view UCSC Genome Browser custom track) | 
| Alignm length: | 200 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 85, 19 | 
| Conread position: | 54-264 | 
| Cow position: | chr6:36920808-36921013 (view UCSC Genome Browser custom track) | 
| Alignm length: | 212 | 
| Alignm identity: | 156 | 
| Alignm E-value: | 7e-32 | 
| Alignm gaps (pig, cow): | 166, 15 | 
| Conread position: | 54-273 | 
| Cow position: | chr6:68816336-68816118 (view UCSC Genome Browser custom track) | 
| Alignm length: | 221 | 
| Alignm identity: | 157 | 
| Alignm E-value: | 2e-32 | 
| Alignm gaps (pig, cow): | 168, 93 | 
| Conread position: | 54-279 | 
| Cow position: | chr6:60468409-60468183 (view UCSC Genome Browser custom track) | 
| Alignm length: | 230 | 
| Alignm identity: | 166 | 
| Alignm E-value: | 8e-33 | 
| Alignm gaps (pig, cow): | 14, 58 | 
| Conread position: | 54-314 | 
| Cow position: | chr6:37332279-37332018 (view UCSC Genome Browser custom track) | 
| Alignm length: | 267 | 
| Alignm identity: | 205 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 76, 23 | 
| Conread position: | 54-324 | 
| Cow position: | chr6:58370918-58370654 (view UCSC Genome Browser custom track) | 
| Alignm length: | 275 | 
| Alignm identity: | 181 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 153, 23 | 
| Conread position: | 54-358 | 
| Cow position: | chr6:32287804-32287511 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 218 | 
| Alignm E-value: | 1.99993e-41 | 
| Alignm gaps (pig, cow): | 42, 23 | 
| Conread position: | 54-360 | 
| Cow position: | chr6:15305738-15305446 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 222 | 
| Alignm E-value: | 2.94273e-44 | 
| Alignm gaps (pig, cow): | 272, 92 | 
| Conread position: | 54-366 | 
| Cow position: | chr6:55282122-55282427 (view UCSC Genome Browser custom track) | 
| Alignm length: | 316 | 
| Alignm identity: | 234 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 14, 161 | 
| Conread position: | 54-370 | 
| Cow position: | chr6:1499816-1499497 (view UCSC Genome Browser custom track) | 
| Alignm length: | 326 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 2.8026e-45 | 
| Alignm gaps (pig, cow): | 17, 58 | 
| Conread position: | 54-370 | 
| Cow position: | chr6:24468228-24468538 (view UCSC Genome Browser custom track) | 
| Alignm length: | 320 | 
| Alignm identity: | 235 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 239, 22 | 
| Conread position: | 54-370 | 
| Cow position: | chr6:67187852-67187544 (view UCSC Genome Browser custom track) | 
| Alignm length: | 319 | 
| Alignm identity: | 203 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 31, 39 | 
| Conread position: | 54-371 | 
| Cow position: | chr6:29485252-29484948 (view UCSC Genome Browser custom track) | 
| Alignm length: | 319 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 94, 21 | 
| Conread position: | 54-372 | 
| Cow position: | chr6:120413-120096 (view UCSC Genome Browser custom track) | 
| Alignm length: | 325 | 
| Alignm identity: | 228 | 
| Alignm E-value: | 8.00141e-43 | 
| Alignm gaps (pig, cow): | 52, 22 | 
| Conread position: | 54-372 | 
| Cow position: | chr6:10105811-10106139 (view UCSC Genome Browser custom track) | 
| Alignm length: | 332 | 
| Alignm identity: | 243 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 161, 21 | 
| Conread position: | 54-372 | 
| Cow position: | chr6:28483188-28482872 (view UCSC Genome Browser custom track) | 
| Alignm length: | 325 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 3e-23 | 
| Alignm gaps (pig, cow): | 15, 54 | 
| Conread position: | 54-372 | 
| Cow position: | chr6:31535400-31535714 (view UCSC Genome Browser custom track) | 
| Alignm length: | 321 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 173, 29 | 
| Conread position: | 54-372 | 
| Cow position: | chr6:36196378-36196071 (view UCSC Genome Browser custom track) | 
| Alignm length: | 320 | 
| Alignm identity: | 225 | 
| Alignm E-value: | 1.99965e-42 | 
| Alignm gaps (pig, cow): | 9, 22 | 
| Conread position: | 54-372 | 
| Cow position: | chr6:37149357-37149050 (view UCSC Genome Browser custom track) | 
| Alignm length: | 322 | 
| Alignm identity: | 225 | 
| Alignm E-value: | 2e-40 | 
| Alignm gaps (pig, cow): | 169, 26 | 
| Conread position: | 54-372 | 
| Cow position: | chr6:38853489-38853801 (view UCSC Genome Browser custom track) | 
| Alignm length: | 322 | 
| Alignm identity: | 227 | 
| Alignm E-value: | 2.99878e-43 | 
| Alignm gaps (pig, cow): | 52, 57 | 
| Conread position: | 54-372 | 
| Cow position: | chr6:39358170-39358484 (view UCSC Genome Browser custom track) | 
| Alignm length: | 327 | 
| Alignm identity: | 231 | 
| Alignm E-value: | 5.99994e-41 | 
| Alignm gaps (pig, cow): | 24, 210 | 
| Conread position: | 54-372 | 
| Cow position: | chr6:40032358-40032046 (view UCSC Genome Browser custom track) | 
| Alignm length: | 323 | 
| Alignm identity: | 221 | 
| Alignm E-value: | 3e-35 | 
| Alignm gaps (pig, cow): | 25, 39 | 
| Conread position: | 54-372 | 
| Cow position: | chr6:44194382-44194688 (view UCSC Genome Browser custom track) | 
| Alignm length: | 320 | 
| Alignm identity: | 229 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 165, 22 | 
| Conread position: | 54-372 | 
| Cow position: | chr6:46465989-46465685 (view UCSC Genome Browser custom track) | 
| Alignm length: | 320 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 52, 21 | 
| Conread position: | 54-372 | 
| Cow position: | chr6:53024638-53024937 (view UCSC Genome Browser custom track) | 
| Alignm length: | 321 | 
| Alignm identity: | 217 | 
| Alignm E-value: | 5e-28 | 
| Alignm gaps (pig, cow): | 165, 11 | 
| Conread position: | 54-372 | 
| Cow position: | chr6:53460399-53460715 (view UCSC Genome Browser custom track) | 
| Alignm length: | 324 | 
| Alignm identity: | 227 | 
| Alignm E-value: | 7.9874e-44 | 
| Alignm gaps (pig, cow): | 163, 22 | 
| Conread position: | 54-372 | 
| Cow position: | chr6:57546059-57546359 (view UCSC Genome Browser custom track) | 
| Alignm length: | 320 | 
| Alignm identity: | 214 | 
| Alignm E-value: | 5e-28 | 
| Alignm gaps (pig, cow): | 283, 92 | 
| Conread position: | 55-249 | 
| Cow position: | chr6:51463465-51463657 (view UCSC Genome Browser custom track) | 
| Alignm length: | 197 | 
| Alignm identity: | 136 | 
| Alignm E-value: | 7e-22 | 
| Alignm gaps (pig, cow): | 153, 57 | 
| Conread position: | 55-309 | 
| Cow position: | chr6:13565253-13565000 (view UCSC Genome Browser custom track) | 
| Alignm length: | 260 | 
| Alignm identity: | 172 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 24, 38 | 
| Conread position: | 55-362 | 
| Cow position: | chr6:38640400-38640094 (view UCSC Genome Browser custom track) | 
| Alignm length: | 310 | 
| Alignm identity: | 221 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 172, 21 | 
| Conread position: | 55-367 | 
| Cow position: | chr6:60740185-60739877 (view UCSC Genome Browser custom track) | 
| Alignm length: | 316 | 
| Alignm identity: | 214 | 
| Alignm E-value: | 1e-35 | 
| Alignm gaps (pig, cow): | 17, 150 | 
| Conread position: | 55-371 | 
| Cow position: | chr6:19264332-19264642 (view UCSC Genome Browser custom track) | 
| Alignm length: | 319 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 271, 20 | 
| Conread position: | 55-372 | 
| Cow position: | chr6:6401117-6400805 (view UCSC Genome Browser custom track) | 
| Alignm length: | 322 | 
| Alignm identity: | 240 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 156, 18 | 
| Conread position: | 56-244 | 
| Cow position: | chr6:53546202-53546016 (view UCSC Genome Browser custom track) | 
| Alignm length: | 189 | 
| Alignm identity: | 133 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 19, 0 | 
| Conread position: | 56-365 | 
| Cow position: | chr6:60118313-60118010 (view UCSC Genome Browser custom track) | 
| Alignm length: | 313 | 
| Alignm identity: | 202 | 
| Alignm E-value: | 1e-24 | 
| Alignm gaps (pig, cow): | 216, 24 | 
| Conread position: | 56-372 | 
| Cow position: | chr6:8637448-8637132 (view UCSC Genome Browser custom track) | 
| Alignm length: | 324 | 
| Alignm identity: | 232 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 117, 21 | 
| Conread position: | 56-372 | 
| Cow position: | chr6:15937685-15937996 (view UCSC Genome Browser custom track) | 
| Alignm length: | 322 | 
| Alignm identity: | 221 | 
| Alignm E-value: | 1e-35 | 
| Alignm gaps (pig, cow): | 24, 12 | 
| Conread position: | 56-372 | 
| Cow position: | chr6:45690444-45690736 (view UCSC Genome Browser custom track) | 
| Alignm length: | 319 | 
| Alignm identity: | 222 | 
| Alignm E-value: | 6e-31 | 
| Alignm gaps (pig, cow): | 50, 19 | 
| Conread position: | 57-191 | 
| Cow position: | chr6:23938227-23938093 (view UCSC Genome Browser custom track) | 
| Alignm length: | 135 | 
| Alignm identity: | 101 | 
| Alignm E-value: | 8e-23 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 57-270 | 
| Cow position: | chr6:1422651-1422440 (view UCSC Genome Browser custom track) | 
| Alignm length: | 216 | 
| Alignm identity: | 151 | 
| Alignm E-value: | 1e-26 | 
| Alignm gaps (pig, cow): | 162, 18 | 
| Conread position: | 57-311 | 
| Cow position: | chr6:60273844-60274094 (view UCSC Genome Browser custom track) | 
| Alignm length: | 258 | 
| Alignm identity: | 185 | 
| Alignm E-value: | 4e-36 | 
| Alignm gaps (pig, cow): | 69, 17 | 
| Conread position: | 57-367 | 
| Cow position: | chr6:50577686-50577382 (view UCSC Genome Browser custom track) | 
| Alignm length: | 314 | 
| Alignm identity: | 221 | 
| Alignm E-value: | 1.99993e-41 | 
| Alignm gaps (pig, cow): | 137, 18 | 
| Conread position: | 57-372 | 
| Cow position: | chr6:10176137-10176446 (view UCSC Genome Browser custom track) | 
| Alignm length: | 322 | 
| Alignm identity: | 212 | 
| Alignm E-value: | 4e-27 | 
| Alignm gaps (pig, cow): | 28, 35 | 
| Conread position: | 57-372 | 
| Cow position: | chr6:46860001-46860311 (view UCSC Genome Browser custom track) | 
| Alignm length: | 318 | 
| Alignm identity: | 240 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 152, 35 | 
| Conread position: | 58-223 | 
| Cow position: | chr6:21470265-21470427 (view UCSC Genome Browser custom track) | 
| Alignm length: | 166 | 
| Alignm identity: | 123 | 
| Alignm E-value: | 1e-26 | 
| Alignm gaps (pig, cow): | 31, 0 | 
| Conread position: | 58-260 | 
| Cow position: | chr6:34119190-34119390 (view UCSC Genome Browser custom track) | 
| Alignm length: | 204 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 173, 40 | 
| Conread position: | 58-300 | 
| Cow position: | chr6:22985689-22985933 (view UCSC Genome Browser custom track) | 
| Alignm length: | 247 | 
| Alignm identity: | 176 | 
| Alignm E-value: | 3e-35 | 
| Alignm gaps (pig, cow): | 22, 38 | 
| Conread position: | 58-324 | 
| Cow position: | chr6:59603044-59603306 (view UCSC Genome Browser custom track) | 
| Alignm length: | 270 | 
| Alignm identity: | 196 | 
| Alignm E-value: | 5.99994e-41 | 
| Alignm gaps (pig, cow): | 166, 11 | 
| Conread position: | 58-341 | 
| Cow position: | chr6:38771444-38771172 (view UCSC Genome Browser custom track) | 
| Alignm length: | 284 | 
| Alignm identity: | 191 | 
| Alignm E-value: | 2e-28 | 
| Alignm gaps (pig, cow): | 18, 0 | 
| Conread position: | 58-362 | 
| Cow position: | chr6:63720365-63720062 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 4e-36 | 
| Alignm gaps (pig, cow): | 162, 19 | 
| Conread position: | 58-372 | 
| Cow position: | chr6:8966261-8965946 (view UCSC Genome Browser custom track) | 
| Alignm length: | 321 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 151, 18 | 
| Conread position: | 58-372 | 
| Cow position: | chr6:53932684-53932991 (view UCSC Genome Browser custom track) | 
| Alignm length: | 319 | 
| Alignm identity: | 207 | 
| Alignm E-value: | 3e-24 | 
| Alignm gaps (pig, cow): | 104, 34 | 
| Conread position: | 59-249 | 
| Cow position: | chr6:62056779-62056588 (view UCSC Genome Browser custom track) | 
| Alignm length: | 192 | 
| Alignm identity: | 136 | 
| Alignm E-value: | 5e-28 | 
| Alignm gaps (pig, cow): | 156, 0 | 
| Conread position: | 59-249 | 
| Cow position: | chr6:67451208-67451397 (view UCSC Genome Browser custom track) | 
| Alignm length: | 193 | 
| Alignm identity: | 136 | 
| Alignm E-value: | 3e-24 | 
| Alignm gaps (pig, cow): | 163, 15 | 
| Conread position: | 59-372 | 
| Cow position: | chr6:26915492-26915187 (view UCSC Genome Browser custom track) | 
| Alignm length: | 317 | 
| Alignm identity: | 231 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 47, 18 | 
| Conread position: | 59-372 | 
| Cow position: | chr6:53652203-53651898 (view UCSC Genome Browser custom track) | 
| Alignm length: | 315 | 
| Alignm identity: | 227 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 267, 21 | 
| Conread position: | 60-321 | 
| Cow position: | chr6:7119457-7119706 (view UCSC Genome Browser custom track) | 
| Alignm length: | 262 | 
| Alignm identity: | 173 | 
| Alignm E-value: | 8e-23 | 
| Alignm gaps (pig, cow): | 9, 0 | 
| Conread position: | 60-368 | 
| Cow position: | chr6:49398456-49398755 (view UCSC Genome Browser custom track) | 
| Alignm length: | 310 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 2.99878e-43 | 
| Alignm gaps (pig, cow): | 266, 131 | 
| Conread position: | 60-372 | 
| Cow position: | chr6:47575072-47574762 (view UCSC Genome Browser custom track) | 
| Alignm length: | 316 | 
| Alignm identity: | 224 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 8, 154 | 
| Conread position: | 62-372 | 
| Cow position: | chr6:57571639-57571330 (view UCSC Genome Browser custom track) | 
| Alignm length: | 313 | 
| Alignm identity: | 229 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 210, 14 | 
| Conread position: | 62-372 | 
| Cow position: | chr6:58590435-58590131 (view UCSC Genome Browser custom track) | 
| Alignm length: | 316 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 5e-29 | 
| Alignm gaps (pig, cow): | 142, 176 | 
| Conread position: | 63-347 | 
| Cow position: | chr6:50976209-50975936 (view UCSC Genome Browser custom track) | 
| Alignm length: | 285 | 
| Alignm identity: | 202 | 
| Alignm E-value: | 6e-40 | 
| Alignm gaps (pig, cow): | 149, 0 | 
| Conread position: | 63-372 | 
| Cow position: | chr6:19681363-19681670 (view UCSC Genome Browser custom track) | 
| Alignm length: | 317 | 
| Alignm identity: | 206 | 
| Alignm E-value: | 3e-23 | 
| Alignm gaps (pig, cow): | 9, 190 | 
| Conread position: | 64-370 | 
| Cow position: | chr6:24004696-24004406 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 202 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 146, 0 | 
| Conread position: | 66-324 | 
| Cow position: | chr6:1429797-1429540 (view UCSC Genome Browser custom track) | 
| Alignm length: | 263 | 
| Alignm identity: | 171 | 
| Alignm E-value: | 7e-21 | 
| Alignm gaps (pig, cow): | 157, 33 | 
| Conread position: | 66-372 | 
| Cow position: | chr6:42565845-42565542 (view UCSC Genome Browser custom track) | 
| Alignm length: | 310 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 6e-30 | 
| Alignm gaps (pig, cow): | 158, 33 | 
| Conread position: | 67-372 | 
| Cow position: | chr6:12551427-12551123 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 224 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 23, 91 | 
| Conread position: | 69-262 | 
| Cow position: | chr6:66570595-66570400 (view UCSC Genome Browser custom track) | 
| Alignm length: | 197 | 
| Alignm identity: | 137 | 
| Alignm E-value: | 9e-24 | 
| Alignm gaps (pig, cow): | 150, 143 | 
| Conread position: | 69-372 | 
| Cow position: | chr6:13687659-13687954 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 223 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 25, 31 | 
| Conread position: | 69-372 | 
| Cow position: | chr6:17414290-17414594 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 225 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 90, 209 | 
| Conread position: | 69-372 | 
| Cow position: | chr6:28976885-28977172 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 224 | 
| Alignm E-value: | 2.94273e-44 | 
| Alignm gaps (pig, cow): | 140, 204 | 
| Conread position: | 70-360 | 
| Cow position: | chr6:1886513-1886799 (view UCSC Genome Browser custom track) | 
| Alignm length: | 293 | 
| Alignm identity: | 193 | 
| Alignm E-value: | 1e-27 | 
| Alignm gaps (pig, cow): | 235, 90 | 
| Conread position: | 70-372 | 
| Cow position: | chr6:38218819-38218529 (view UCSC Genome Browser custom track) | 
| Alignm length: | 303 | 
| Alignm identity: | 208 | 
| Alignm E-value: | 1e-35 | 
| Alignm gaps (pig, cow): | 7, 0 | 
| Conread position: | 71-249 | 
| Cow position: | chr6:68685706-68685530 (view UCSC Genome Browser custom track) | 
| Alignm length: | 179 | 
| Alignm identity: | 123 | 
| Alignm E-value: | 7e-21 | 
| Alignm gaps (pig, cow): | 97, 0 | 
| Conread position: | 71-341 | 
| Cow position: | chr6:58597352-58597620 (view UCSC Genome Browser custom track) | 
| Alignm length: | 275 | 
| Alignm identity: | 201 | 
| Alignm E-value: | 2.99878e-43 | 
| Alignm gaps (pig, cow): | 13, 180 | 
| Conread position: | 75-372 | 
| Cow position: | chr6:8787888-8788180 (view UCSC Genome Browser custom track) | 
| Alignm length: | 300 | 
| Alignm identity: | 198 | 
| Alignm E-value: | 5e-29 | 
| Alignm gaps (pig, cow): | 164, 151 | 
| Conread position: | 77-273 | 
| Cow position: | chr6:31078722-31078920 (view UCSC Genome Browser custom track) | 
| Alignm length: | 205 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 8e-23 | 
| Alignm gaps (pig, cow): | 93, 22 | 
| Conread position: | 77-361 | 
| Cow position: | chr6:28999793-29000058 (view UCSC Genome Browser custom track) | 
| Alignm length: | 287 | 
| Alignm identity: | 198 | 
| Alignm E-value: | 4e-27 | 
| Alignm gaps (pig, cow): | 70, 15 | 
| Conread position: | 77-372 | 
| Cow position: | chr6:60350145-60350442 (view UCSC Genome Browser custom track) | 
| Alignm length: | 299 | 
| Alignm identity: | 212 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 135, 256 | 
| Conread position: | 82-372 | 
| Cow position: | chr6:21231666-21231393 (view UCSC Genome Browser custom track) | 
| Alignm length: | 291 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 1e-38 | 
| Alignm gaps (pig, cow): | 128, 0 | 
| Conread position: | 84-372 | 
| Cow position: | chr6:38614952-38614681 (view UCSC Genome Browser custom track) | 
| Alignm length: | 292 | 
| Alignm identity: | 205 | 
| Alignm E-value: | 2e-32 | 
| Alignm gaps (pig, cow): | 140, 62 | 
| Conread position: | 85-255 | 
| Cow position: | chr6:32853326-32853156 (view UCSC Genome Browser custom track) | 
| Alignm length: | 173 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 1e-27 | 
| Alignm gaps (pig, cow): | 125, 66 | 
| Conread position: | 85-299 | 
| Cow position: | chr6:20929375-20929590 (view UCSC Genome Browser custom track) | 
| Alignm length: | 218 | 
| Alignm identity: | 149 | 
| Alignm E-value: | 1e-24 | 
| Alignm gaps (pig, cow): | 138, 25 | 
| Conread position: | 85-321 | 
| Cow position: | chr6:66375194-66375426 (view UCSC Genome Browser custom track) | 
| Alignm length: | 237 | 
| Alignm identity: | 170 | 
| Alignm E-value: | 1e-36 | 
| Alignm gaps (pig, cow): | 120, 0 | 
| Conread position: | 85-324 | 
| Cow position: | chr6:4864408-4864647 (view UCSC Genome Browser custom track) | 
| Alignm length: | 240 | 
| Alignm identity: | 160 | 
| Alignm E-value: | 5e-29 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 85-369 | 
| Cow position: | chr6:24031515-24031235 (view UCSC Genome Browser custom track) | 
| Alignm length: | 292 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 8e-33 | 
| Alignm gaps (pig, cow): | 124, 61 | 
| Conread position: | 85-369 | 
| Cow position: | chr6:37634935-37634649 (view UCSC Genome Browser custom track) | 
| Alignm length: | 296 | 
| Alignm identity: | 202 | 
| Alignm E-value: | 6e-30 | 
| Alignm gaps (pig, cow): | 79, 246 | 
| Conread position: | 85-372 | 
| Cow position: | chr6:31526185-31525905 (view UCSC Genome Browser custom track) | 
| Alignm length: | 291 | 
| Alignm identity: | 191 | 
| Alignm E-value: | 3e-25 | 
| Alignm gaps (pig, cow): | 102, 212 | 
| Conread position: | 85-372 | 
| Cow position: | chr6:35613278-35613557 (view UCSC Genome Browser custom track) | 
| Alignm length: | 294 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 2e-31 | 
| Alignm gaps (pig, cow): | 58, 195 | 
| Conread position: | 85-372 | 
| Cow position: | chr6:47640293-47640580 (view UCSC Genome Browser custom track) | 
| Alignm length: | 291 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 138, 127 | 
| Conread position: | 89-260 | 
| Cow position: | chr6:54082854-54083026 (view UCSC Genome Browser custom track) | 
| Alignm length: | 174 | 
| Alignm identity: | 128 | 
| Alignm E-value: | 4e-27 | 
| Alignm gaps (pig, cow): | 94, 100 | 
| Conread position: | 95-370 | 
| Cow position: | chr6:130035-130306 (view UCSC Genome Browser custom track) | 
| Alignm length: | 278 | 
| Alignm identity: | 205 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 122, 9 | 
| Conread position: | 95-372 | 
| Cow position: | chr6:32122036-32121768 (view UCSC Genome Browser custom track) | 
| Alignm length: | 280 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 115, 157 | 
| Conread position: | 96-372 | 
| Cow position: | chr6:10695988-10695724 (view UCSC Genome Browser custom track) | 
| Alignm length: | 278 | 
| Alignm identity: | 182 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 232, 29 | 
| Conread position: | 97-364 | 
| Cow position: | chr6:46865465-46865732 (view UCSC Genome Browser custom track) | 
| Alignm length: | 273 | 
| Alignm identity: | 177 | 
| Alignm E-value: | 7e-22 | 
| Alignm gaps (pig, cow): | 9, 14 | 
| Conread position: | 98-364 | 
| Cow position: | chr6:54936705-54936438 (view UCSC Genome Browser custom track) | 
| Alignm length: | 272 | 
| Alignm identity: | 178 | 
| Alignm E-value: | 9e-24 | 
| Alignm gaps (pig, cow): | 18, 8 | 
| Conread position: | 98-372 | 
| Cow position: | chr6:26450438-26450174 (view UCSC Genome Browser custom track) | 
| Alignm length: | 277 | 
| Alignm identity: | 185 | 
| Alignm E-value: | 1e-24 | 
| Alignm gaps (pig, cow): | 143, 53 | 
| Conread position: | 99-345 | 
| Cow position: | chr6:4383604-4383366 (view UCSC Genome Browser custom track) | 
| Alignm length: | 249 | 
| Alignm identity: | 183 | 
| Alignm E-value: | 1e-36 | 
| Alignm gaps (pig, cow): | 173, 84 | 
| Conread position: | 99-370 | 
| Cow position: | chr6:34196024-34196289 (view UCSC Genome Browser custom track) | 
| Alignm length: | 274 | 
| Alignm identity: | 185 | 
| Alignm E-value: | 5e-29 | 
| Alignm gaps (pig, cow): | 15, 120 | 
| Conread position: | 99-370 | 
| Cow position: | chr6:36652547-36652273 (view UCSC Genome Browser custom track) | 
| Alignm length: | 276 | 
| Alignm identity: | 178 | 
| Alignm E-value: | 3e-24 | 
| Alignm gaps (pig, cow): | 95, 240 | 
| Conread position: | 99-372 | 
| Cow position: | chr6:23247841-23248106 (view UCSC Genome Browser custom track) | 
| Alignm length: | 277 | 
| Alignm identity: | 198 | 
| Alignm E-value: | 1e-37 | 
| Alignm gaps (pig, cow): | 121, 62 | 
| Conread position: | 99-372 | 
| Cow position: | chr6:36470437-36470706 (view UCSC Genome Browser custom track) | 
| Alignm length: | 279 | 
| Alignm identity: | 187 | 
| Alignm E-value: | 1e-26 | 
| Alignm gaps (pig, cow): | 102, 232 | 
| Conread position: | 100-372 | 
| Cow position: | chr6:899169-899433 (view UCSC Genome Browser custom track) | 
| Alignm length: | 273 | 
| Alignm identity: | 202 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 117, 0 | 
| Conread position: | 110-254 | 
| Cow position: | chr6:12197294-12197148 (view UCSC Genome Browser custom track) | 
| Alignm length: | 147 | 
| Alignm identity: | 108 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 111, 0 | 
| Conread position: | 110-262 | 
| Cow position: | chr6:32516995-32517137 (view UCSC Genome Browser custom track) | 
| Alignm length: | 153 | 
| Alignm identity: | 117 | 
| Alignm E-value: | 3e-23 | 
| Alignm gaps (pig, cow): | 36, 0 | 
| Conread position: | 110-279 | 
| Cow position: | chr6:59770338-59770173 (view UCSC Genome Browser custom track) | 
| Alignm length: | 171 | 
| Alignm identity: | 127 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 110, 21 | 
| Conread position: | 110-347 | 
| Cow position: | chr6:66874465-66874229 (view UCSC Genome Browser custom track) | 
| Alignm length: | 240 | 
| Alignm identity: | 161 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 112, 70 | 
| Conread position: | 110-369 | 
| Cow position: | chr6:15022433-15022701 (view UCSC Genome Browser custom track) | 
| Alignm length: | 271 | 
| Alignm identity: | 196 | 
| Alignm E-value: | 4e-38 | 
| Alignm gaps (pig, cow): | 162, 218 | 
| Conread position: | 110-372 | 
| Cow position: | chr6:25407277-25407535 (view UCSC Genome Browser custom track) | 
| Alignm length: | 266 | 
| Alignm identity: | 173 | 
| Alignm E-value: | 7e-21 | 
| Alignm gaps (pig, cow): | 29, 101 | 
| Conread position: | 110-372 | 
| Cow position: | chr6:52248016-52248278 (view UCSC Genome Browser custom track) | 
| Alignm length: | 267 | 
| Alignm identity: | 181 | 
| Alignm E-value: | 5e-29 | 
| Alignm gaps (pig, cow): | 24, 119 | 
| Conread position: | 110-372 | 
| Cow position: | chr6:61608626-61608364 (view UCSC Genome Browser custom track) | 
| Alignm length: | 264 | 
| Alignm identity: | 207 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 231, 216 | 
| Conread position: | 111-372 | 
| Cow position: | chr6:12542817-12543076 (view UCSC Genome Browser custom track) | 
| Alignm length: | 264 | 
| Alignm identity: | 184 | 
| Alignm E-value: | 3e-35 | 
| Alignm gaps (pig, cow): | 106, 217 | 
| Conread position: | 112-372 | 
| Cow position: | chr6:67968498-67968757 (view UCSC Genome Browser custom track) | 
| Alignm length: | 264 | 
| Alignm identity: | 177 | 
| Alignm E-value: | 5e-28 | 
| Alignm gaps (pig, cow): | 112, 172 | 
| Conread position: | 114-353 | 
| Cow position: | chr6:17245503-17245738 (view UCSC Genome Browser custom track) | 
| Alignm length: | 246 | 
| Alignm identity: | 173 | 
| Alignm E-value: | 4e-26 | 
| Alignm gaps (pig, cow): | 49, 64 | 
| Conread position: | 114-371 | 
| Cow position: | chr6:54368794-54369042 (view UCSC Genome Browser custom track) | 
| Alignm length: | 260 | 
| Alignm identity: | 175 | 
| Alignm E-value: | 3e-23 | 
| Alignm gaps (pig, cow): | 181, 95 | 
| Conread position: | 114-372 | 
| Cow position: | chr6:40713393-40713645 (view UCSC Genome Browser custom track) | 
| Alignm length: | 260 | 
| Alignm identity: | 172 | 
| Alignm E-value: | 3e-25 | 
| Alignm gaps (pig, cow): | 192, 104 | 
| Conread position: | 119-353 | 
| Cow position: | chr6:60667518-60667293 (view UCSC Genome Browser custom track) | 
| Alignm length: | 237 | 
| Alignm identity: | 161 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 185, 87 | 
| Conread position: | 119-369 | 
| Cow position: | chr6:8562825-8562576 (view UCSC Genome Browser custom track) | 
| Alignm length: | 253 | 
| Alignm identity: | 169 | 
| Alignm E-value: | 1e-26 | 
| Alignm gaps (pig, cow): | 110, 22 | 
| Conread position: | 119-370 | 
| Cow position: | chr6:16746448-16746195 (view UCSC Genome Browser custom track) | 
| Alignm length: | 256 | 
| Alignm identity: | 166 | 
| Alignm E-value: | 7e-22 | 
| Alignm gaps (pig, cow): | 180, 92 | 
| Conread position: | 119-370 | 
| Cow position: | chr6:32421252-32420994 (view UCSC Genome Browser custom track) | 
| Alignm length: | 264 | 
| Alignm identity: | 179 | 
| Alignm E-value: | 7e-21 | 
| Alignm gaps (pig, cow): | 43, 89 | 
| Conread position: | 119-372 | 
| Cow position: | chr6:445428-445168 (view UCSC Genome Browser custom track) | 
| Alignm length: | 262 | 
| Alignm identity: | 171 | 
| Alignm E-value: | 8e-23 | 
| Alignm gaps (pig, cow): | 104, 226 | 
| Conread position: | 119-372 | 
| Cow position: | chr6:1770093-1770342 (view UCSC Genome Browser custom track) | 
| Alignm length: | 256 | 
| Alignm identity: | 167 | 
| Alignm E-value: | 7e-22 | 
| Alignm gaps (pig, cow): | 186, 92 | 
| Conread position: | 119-372 | 
| Cow position: | chr6:16316421-16316163 (view UCSC Genome Browser custom track) | 
| Alignm length: | 263 | 
| Alignm identity: | 178 | 
| Alignm E-value: | 3e-25 | 
| Alignm gaps (pig, cow): | 21, 216 | 
| Conread position: | 119-372 | 
| Cow position: | chr6:50747102-50746837 (view UCSC Genome Browser custom track) | 
| Alignm length: | 268 | 
| Alignm identity: | 179 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 81, 20 | 
| Conread position: | 119-372 | 
| Cow position: | chr6:61113872-61113607 (view UCSC Genome Browser custom track) | 
| Alignm length: | 268 | 
| Alignm identity: | 179 | 
| Alignm E-value: | 7e-22 | 
| Alignm gaps (pig, cow): | 54, 67 | 
| Conread position: | 119-372 | 
| Cow position: | chr6:63272506-63272757 (view UCSC Genome Browser custom track) | 
| Alignm length: | 258 | 
| Alignm identity: | 179 | 
| Alignm E-value: | 6e-30 | 
| Alignm gaps (pig, cow): | 100, 93 | 
| Conread position: | 120-323 | 
| Cow position: | chr6:54208031-54208237 (view UCSC Genome Browser custom track) | 
| Alignm length: | 210 | 
| Alignm identity: | 146 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 55, 65 | 
| Conread position: | 120-356 | 
| Cow position: | chr6:35415411-35415653 (view UCSC Genome Browser custom track) | 
| Alignm length: | 243 | 
| Alignm identity: | 165 | 
| Alignm E-value: | 1e-26 | 
| Alignm gaps (pig, cow): | 68, 0 | 
| Conread position: | 120-367 | 
| Cow position: | chr6:47616505-47616751 (view UCSC Genome Browser custom track) | 
| Alignm length: | 250 | 
| Alignm identity: | 162 | 
| Alignm E-value: | 7e-22 | 
| Alignm gaps (pig, cow): | 161, 100 | 
| Conread position: | 120-370 | 
| Cow position: | chr6:17090703-17090454 (view UCSC Genome Browser custom track) | 
| Alignm length: | 253 | 
| Alignm identity: | 170 | 
| Alignm E-value: | 1e-27 | 
| Alignm gaps (pig, cow): | 110, 48 | 
| Conread position: | 120-372 | 
| Cow position: | chr6:27888455-27888205 (view UCSC Genome Browser custom track) | 
| Alignm length: | 258 | 
| Alignm identity: | 184 | 
| Alignm E-value: | 3e-34 | 
| Alignm gaps (pig, cow): | 100, 89 | 
| Conread position: | 121-372 | 
| Cow position: | chr6:47305444-47305196 (view UCSC Genome Browser custom track) | 
| Alignm length: | 257 | 
| Alignm identity: | 176 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 100, 139 | 
| Conread position: | 121-372 | 
| Cow position: | chr6:55040111-55040359 (view UCSC Genome Browser custom track) | 
| Alignm length: | 255 | 
| Alignm identity: | 168 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 108, 91 | 
| Conread position: | 122-292 | 
| Cow position: | chr6:7170246-7170414 (view UCSC Genome Browser custom track) | 
| Alignm length: | 175 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 9e-24 | 
| Alignm gaps (pig, cow): | 32, 93 | 
| Conread position: | 126-298 | 
| Cow position: | chr6:36493443-36493622 (view UCSC Genome Browser custom track) | 
| Alignm length: | 181 | 
| Alignm identity: | 132 | 
| Alignm E-value: | 9e-24 | 
| Alignm gaps (pig, cow): | 38, 15 | 
| Conread position: | 127-372 | 
| Cow position: | chr6:62924899-62925136 (view UCSC Genome Browser custom track) | 
| Alignm length: | 248 | 
| Alignm identity: | 166 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 38, 87 | 
| Conread position: | 130-291 | 
| Cow position: | chr6:1944807-1944645 (view UCSC Genome Browser custom track) | 
| Alignm length: | 165 | 
| Alignm identity: | 120 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 90, 37 | 
| Conread position: | 131-369 | 
| Cow position: | chr6:9323237-9323018 (view UCSC Genome Browser custom track) | 
| Alignm length: | 240 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 1e-27 | 
| Alignm gaps (pig, cow): | 195, 26 | 
| Conread position: | 131-372 | 
| Cow position: | chr6:24962238-24962002 (view UCSC Genome Browser custom track) | 
| Alignm length: | 245 | 
| Alignm identity: | 181 | 
| Alignm E-value: | 5e-39 | 
| Alignm gaps (pig, cow): | 39, 141 | 
| Conread position: | 132-290 | 
| Cow position: | chr6:67615338-67615496 (view UCSC Genome Browser custom track) | 
| Alignm length: | 159 | 
| Alignm identity: | 123 | 
| Alignm E-value: | 2e-32 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 132-324 | 
| Cow position: | chr6:11192372-11192565 (view UCSC Genome Browser custom track) | 
| Alignm length: | 195 | 
| Alignm identity: | 156 | 
| Alignm E-value: | 2.94273e-44 | 
| Alignm gaps (pig, cow): | 87, 166 | 
| Conread position: | 133-357 | 
| Cow position: | chr6:12829134-12829354 (view UCSC Genome Browser custom track) | 
| Alignm length: | 228 | 
| Alignm identity: | 160 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 83, 107 | 
| Conread position: | 137-365 | 
| Cow position: | chr6:18961430-18961662 (view UCSC Genome Browser custom track) | 
| Alignm length: | 235 | 
| Alignm identity: | 173 | 
| Alignm E-value: | 1e-37 | 
| Alignm gaps (pig, cow): | 189, 9 | 
| Conread position: | 144-367 | 
| Cow position: | chr6:48803553-48803779 (view UCSC Genome Browser custom track) | 
| Alignm length: | 227 | 
| Alignm identity: | 150 | 
| Alignm E-value: | 3e-23 | 
| Alignm gaps (pig, cow): | 68, 0 | 
| Conread position: | 147-372 | 
| Cow position: | chr6:21542400-21542177 (view UCSC Genome Browser custom track) | 
| Alignm length: | 228 | 
| Alignm identity: | 168 | 
| Alignm E-value: | 1e-37 | 
| Alignm gaps (pig, cow): | 63, 181 | 
| Conread position: | 148-359 | 
| Cow position: | chr6:37376438-37376651 (view UCSC Genome Browser custom track) | 
| Alignm length: | 215 | 
| Alignm identity: | 159 | 
| Alignm E-value: | 4e-36 | 
| Alignm gaps (pig, cow): | 77, 185 | 
| Conread position: | 152-360 | 
| Cow position: | chr6:49410625-49410825 (view UCSC Genome Browser custom track) | 
| Alignm length: | 210 | 
| Alignm identity: | 157 | 
| Alignm E-value: | 8e-33 | 
| Alignm gaps (pig, cow): | 64, 90 | 
| Conread position: | 160-306 | 
| Cow position: | chr6:63168931-63169083 (view UCSC Genome Browser custom track) | 
| Alignm length: | 153 | 
| Alignm identity: | 113 | 
| Alignm E-value: | 7e-22 | 
| Alignm gaps (pig, cow): | 46, 0 | 
| Conread position: | 162-372 | 
| Cow position: | chr6:6460604-6460396 (view UCSC Genome Browser custom track) | 
| Alignm length: | 212 | 
| Alignm identity: | 163 | 
| Alignm E-value: | 6.99949e-42 | 
| Alignm gaps (pig, cow): | 177, 53 | 
| Conread position: | 168-357 | 
| Cow position: | chr6:34031717-34031531 (view UCSC Genome Browser custom track) | 
| Alignm length: | 191 | 
| Alignm identity: | 137 | 
| Alignm E-value: | 4e-26 | 
| Alignm gaps (pig, cow): | 158, 59 | 
| Conread position: | 169-372 | 
| Cow position: | chr6:58173240-58173040 (view UCSC Genome Browser custom track) | 
| Alignm length: | 206 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 3e-24 | 
| Alignm gaps (pig, cow): | 40, 126 | 
| Conread position: | 170-372 | 
| Cow position: | chr6:44984384-44984183 (view UCSC Genome Browser custom track) | 
| Alignm length: | 205 | 
| Alignm identity: | 143 | 
| Alignm E-value: | 1e-24 | 
| Alignm gaps (pig, cow): | 134, 41 | 
| Conread position: | 170-372 | 
| Cow position: | chr6:53731578-53731378 (view UCSC Genome Browser custom track) | 
| Alignm length: | 205 | 
| Alignm identity: | 143 | 
| Alignm E-value: | 3e-24 | 
| Alignm gaps (pig, cow): | 36, 158 | 
| Conread position: | 170-372 | 
| Cow position: | chr6:61137429-61137228 (view UCSC Genome Browser custom track) | 
| Alignm length: | 203 | 
| Alignm identity: | 140 | 
| Alignm E-value: | 1e-26 | 
| Alignm gaps (pig, cow): | 132, 0 | 
| Conread position: | 172-351 | 
| Cow position: | chr6:38234011-38233834 (view UCSC Genome Browser custom track) | 
| Alignm length: | 180 | 
| Alignm identity: | 125 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 154, 0 | 
| Conread position: | 185-370 | 
| Cow position: | chr6:36928700-36928512 (view UCSC Genome Browser custom track) | 
| Alignm length: | 191 | 
| Alignm identity: | 133 | 
| Alignm E-value: | 7e-21 | 
| Alignm gaps (pig, cow): | 45, 146 | 
| Conread position: | 202-372 | 
| Cow position: | chr6:33277068-33276894 (view UCSC Genome Browser custom track) | 
| Alignm length: | 176 | 
| Alignm identity: | 125 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 17, 133 | 
| Conread position: | 206-370 | 
| Cow position: | chr6:47624943-47625108 (view UCSC Genome Browser custom track) | 
| Alignm length: | 169 | 
| Alignm identity: | 124 | 
| Alignm E-value: | 7e-22 | 
| Alignm gaps (pig, cow): | 15, 28 | 
| Conread position: | 210-364 | 
| Cow position: | chr6:48344347-48344193 (view UCSC Genome Browser custom track) | 
| Alignm length: | 156 | 
| Alignm identity: | 112 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 116, 127 | 
| Conread position: | 214-372 | 
| Cow position: | chr6:39994450-39994604 (view UCSC Genome Browser custom track) | 
| Alignm length: | 160 | 
| Alignm identity: | 116 | 
| Alignm E-value: | 7e-21 | 
| Alignm gaps (pig, cow): | 112, 68 | 
| Conread position: | 218-371 | 
| Cow position: | chr6:15922992-15923141 (view UCSC Genome Browser custom track) | 
| Alignm length: | 154 | 
| Alignm identity: | 118 | 
| Alignm E-value: | 1e-26 | 
| Alignm gaps (pig, cow): | 108, 0 | 
| Conread position: | 222-360 | 
| Cow position: | chr6:32210625-32210763 (view UCSC Genome Browser custom track) | 
| Alignm length: | 140 | 
| Alignm identity: | 106 | 
| Alignm E-value: | 3e-23 | 
| Alignm gaps (pig, cow): | 104, 115 | 
| Conread position: | 238-372 | 
| Cow position: | chr6:2013006-2012876 (view UCSC Genome Browser custom track) | 
| Alignm length: | 135 | 
| Alignm identity: | 106 | 
| Alignm E-value: | 3e-24 | 
| Alignm gaps (pig, cow): | 88, 0 | 
| Conread position: | 240-372 | 
| Cow position: | chr6:18904356-18904485 (view UCSC Genome Browser custom track) | 
| Alignm length: | 133 | 
| Alignm identity: | 107 | 
| Alignm E-value: | 4e-27 | 
| Alignm gaps (pig, cow): | 86, 0 | 
Show alignments to all cow chromosomes.
