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Cow genome map

           
Conread name:
           
Ss1.1-rpigcf0_007062.5
        

               
Conread position:
               
1-273
               

               
Cow position:
               
chr1:13637759-13637487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
10, 17
               

               
Conread position:
               
1-283
               

               
Cow position:
               
chr1:64572418-64572702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
48, 75
               

               
Conread position:
               
1-283
               

               
Cow position:
               
chr1:70227789-70227503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
9, 47
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr1:42541504-42541779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
24, 9
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr1:82880551-82880819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
45, 74
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr1:91651453-91651160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
3-288
               

               
Cow position:
               
chr1:16061110-16060815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
24, 221
               

               
Conread position:
               
3-290
               

               
Cow position:
               
chr1:56477495-56477780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
46, 8
               

               
Conread position:
               
3-302
               

               
Cow position:
               
chr1:39225019-39224730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
46, 8
               

               
Conread position:
               
4-231
               

               
Cow position:
               
chr1:71253644-71253423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
43, 29
               

               
Conread position:
               
4-233
               

               
Cow position:
               
chr1:23512747-23512524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
219, 27
               

               
Conread position:
               
4-281
               

               
Cow position:
               
chr1:63434898-63434612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
45, 70
               

               
Conread position:
               
4-283
               

               
Cow position:
               
chr1:90976177-90975888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
45, 55
               

               
Conread position:
               
4-284
               

               
Cow position:
               
chr1:65028438-65028709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
7, 55
               

               
Conread position:
               
4-298
               

               
Cow position:
               
chr1:47288149-47288447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
38, 8
               

               
Conread position:
               
5-216
               

               
Cow position:
               
chr1:21460779-21460988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
42, 22
               

               
Conread position:
               
5-234
               

               
Cow position:
               
chr1:34300640-34300415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
44, 8
               

               
Conread position:
               
5-244
               

               
Cow position:
               
chr1:48769712-48769948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
46, 68
               

               
Conread position:
               
5-277
               

               
Cow position:
               
chr1:73584502-73584223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
37, 58
               

               
Conread position:
               
5-281
               

               
Cow position:
               
chr1:71079048-71078776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
42, 7
               

               
Conread position:
               
5-283
               

               
Cow position:
               
chr1:43352749-43352465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 129
               

               
Conread position:
               
5-283
               

               
Cow position:
               
chr1:71666024-71665746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
216, 45
               

               
Conread position:
               
5-303
               

               
Cow position:
               
chr1:34159747-34160038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
158, 7
               

               
Conread position:
               
6-269
               

               
Cow position:
               
chr1:101268098-101267827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
43, 110
               

               
Conread position:
               
7-200
               

               
Cow position:
               
chr1:96478608-96478802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
43, 60
               

               
Conread position:
               
7-217
               

               
Cow position:
               
chr1:89230319-89230109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
72, 44
               

               
Conread position:
               
7-283
               

               
Cow position:
               
chr1:1981204-1980922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
40, 51
               

               
Conread position:
               
7-283
               

               
Cow position:
               
chr1:50931065-50930792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
42, 22
               

               
Conread position:
               
7-283
               

               
Cow position:
               
chr1:102266356-102266082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
40, 6
               

               
Conread position:
               
7-293
               

               
Cow position:
               
chr1:71119427-71119719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
41, 180
               

               
Conread position:
               
8-173
               

               
Cow position:
               
chr1:42398282-42398116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
41, 51
               

               
Conread position:
               
8-186
               

               
Cow position:
               
chr1:85596853-85597026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
41, 111
               

               
Conread position:
               
8-189
               

               
Cow position:
               
chr1:4374428-4374246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
6, 51
               

               
Conread position:
               
8-198
               

               
Cow position:
               
chr1:91800690-91800498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
41, 27
               

               
Conread position:
               
8-200
               

               
Cow position:
               
chr1:43703319-43703511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
38, 68
               

               
Conread position:
               
8-205
               

               
Cow position:
               
chr1:81355797-81355596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
8-208
               

               
Cow position:
               
chr1:77683269-77683462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
41, 65
               

               
Conread position:
               
8-209
               

               
Cow position:
               
chr1:45288960-45288759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
40, 65
               

               
Conread position:
               
8-212
               

               
Cow position:
               
chr1:61543006-61542805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
41, 65
               

               
Conread position:
               
8-213
               

               
Cow position:
               
chr1:37309601-37309404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
8-215
               

               
Cow position:
               
chr1:93810341-93810546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
37, 63
               

               
Conread position:
               
8-216
               

               
Cow position:
               
chr1:42545874-42545661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
8-216
               

               
Cow position:
               
chr1:88618508-88618714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
41, 25
               

               
Conread position:
               
8-217
               

               
Cow position:
               
chr1:16962097-16961891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
41, 53
               

               
Conread position:
               
8-217
               

               
Cow position:
               
chr1:69264728-69264927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
8-217
               

               
Cow position:
               
chr1:89076717-89076514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
39, 53
               

               
Conread position:
               
8-217
               

               
Cow position:
               
chr1:98413682-98413891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
72, 17
               

               
Conread position:
               
8-217
               

               
Cow position:
               
chr1:100706045-100706245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
42, 63
               

               
Conread position:
               
8-219
               

               
Cow position:
               
chr1:30418126-30417927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
8-219
               

               
Cow position:
               
chr1:78809792-78809997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
41, 64
               

               
Conread position:
               
8-227
               

               
Cow position:
               
chr1:97696654-97696873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
41, 133
               

               
Conread position:
               
8-227
               

               
Cow position:
               
chr1:98511840-98512055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
42, 70
               

               
Conread position:
               
8-231
               

               
Cow position:
               
chr1:77425014-77425236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
205, 43
               

               
Conread position:
               
8-233
               

               
Cow position:
               
chr1:40531201-40530967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
40, 114
               

               
Conread position:
               
8-233
               

               
Cow position:
               
chr1:45670550-45670767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
99, 23
               

               
Conread position:
               
8-233
               

               
Cow position:
               
chr1:50991846-50992067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
8-234
               

               
Cow position:
               
chr1:4032540-4032770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
8-234
               

               
Cow position:
               
chr1:48730913-48730697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
40, 17
               

               
Conread position:
               
8-234
               

               
Cow position:
               
chr1:78697857-78697637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
41, 5
               

               
Conread position:
               
8-234
               

               
Cow position:
               
chr1:90868529-90868311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
40, 68
               

               
Conread position:
               
8-235
               

               
Cow position:
               
chr1:39069043-39068823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
8-237
               

               
Cow position:
               
chr1:39418209-39417976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
43, 188
               

               
Conread position:
               
8-237
               

               
Cow position:
               
chr1:92989501-92989729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
41, 64
               

               
Conread position:
               
8-241
               

               
Cow position:
               
chr1:77880824-77880590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
63, 42
               

               
Conread position:
               
8-241
               

               
Cow position:
               
chr1:85550166-85549937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
39, 64
               

               
Conread position:
               
8-241
               

               
Cow position:
               
chr1:89835161-89835392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
42, 53
               

               
Conread position:
               
8-243
               

               
Cow position:
               
chr1:71796402-71796168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
68, 32
               

               
Conread position:
               
8-243
               

               
Cow position:
               
chr1:89742084-89741850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
145, 43
               

               
Conread position:
               
8-246
               

               
Cow position:
               
chr1:32001409-32001171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
42, 132
               

               
Conread position:
               
8-260
               

               
Cow position:
               
chr1:4291072-4291319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
38, 120
               

               
Conread position:
               
8-262
               

               
Cow position:
               
chr1:24534342-24534094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
41, 65
               

               
Conread position:
               
8-262
               

               
Cow position:
               
chr1:53520823-53521081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
19, 66
               

               
Conread position:
               
8-262
               

               
Cow position:
               
chr1:69695080-69694831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
41, 65
               

               
Conread position:
               
8-265
               

               
Cow position:
               
chr1:48581043-48581300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
33, 62
               

               
Conread position:
               
8-268
               

               
Cow position:
               
chr1:31607983-31607713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
38, 101
               

               
Conread position:
               
8-269
               

               
Cow position:
               
chr1:31348528-31348261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
41, 51
               

               
Conread position:
               
8-270
               

               
Cow position:
               
chr1:42482115-42482374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
41, 55
               

               
Conread position:
               
8-270
               

               
Cow position:
               
chr1:63138753-63139019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
34, 54
               

               
Conread position:
               
8-270
               

               
Cow position:
               
chr1:72105323-72105578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
41, 62
               

               
Conread position:
               
8-270
               

               
Cow position:
               
chr1:79660490-79660223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
42, 53
               

               
Conread position:
               
8-270
               

               
Cow position:
               
chr1:86110819-86110567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
39, 50
               

               
Conread position:
               
8-280
               

               
Cow position:
               
chr1:11853773-11853501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
41, 65
               

               
Conread position:
               
8-280
               

               
Cow position:
               
chr1:95557949-95558225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
41, 5
               

               
Conread position:
               
8-281
               

               
Cow position:
               
chr1:6304951-6304691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
41, 64
               

               
Conread position:
               
8-281
               

               
Cow position:
               
chr1:10778478-10778740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
8-281
               

               
Cow position:
               
chr1:15333796-15334074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
41, 137
               

               
Conread position:
               
8-281
               

               
Cow position:
               
chr1:22944114-22943842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
41, 51
               

               
Conread position:
               
8-281
               

               
Cow position:
               
chr1:28563655-28563375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
67, 28
               

               
Conread position:
               
8-281
               

               
Cow position:
               
chr1:63596142-63595865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
87, 37
               

               
Conread position:
               
8-281
               

               
Cow position:
               
chr1:66898585-66898308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
38, 51
               

               
Conread position:
               
8-281
               

               
Cow position:
               
chr1:93528610-93528880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
36, 75
               

               
Conread position:
               
8-282
               

               
Cow position:
               
chr1:6941375-6941653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
41, 65
               

               
Conread position:
               
8-282
               

               
Cow position:
               
chr1:6958788-6959066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
41, 65
               

               
Conread position:
               
8-282
               

               
Cow position:
               
chr1:72068927-72068644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 71
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr1:484554-484275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
41, 51
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr1:635773-635496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
42, 53
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr1:2976082-2975801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
41, 62
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr1:5637164-5636884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
41, 53
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr1:7442895-7443170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
41, 53
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr1:10616792-10617079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
41, 154
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr1:11913965-11913693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
67, 28
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr1:15547382-15547653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
16, 40
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr1:17875799-17875525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
39, 122
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr1:18936917-18936649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
99, 31
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr1:23186882-23186614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
64, 10
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr1:24133146-24132875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
215, 19
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr1:33206959-33206686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
138, 36
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr1:33331176-33330914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
39, 50
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr1:33720031-33720292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
216, 64
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr1:35162321-35162593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
39, 73
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr1:35600385-35600102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
34, 53
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr1:41181757-41182024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
41, 53
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr1:43855213-43855477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
44, 86
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr1:47886574-47886292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr1:52435186-52435463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
35, 19
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr1:53369995-53370272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
40, 15
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr1:53374343-53374615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
41, 93
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr1:54258476-54258757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 23
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr1:64804190-64803909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
209, 36
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr1:65318490-65318765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 11
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr1:66138232-66138510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
42, 65
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr1:68817887-68817613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
39, 50
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr1:68845571-68845318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr1:71350811-71350536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
217, 30
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr1:72011897-72011634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
40, 53
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr1:72035013-72034740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
37, 72
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr1:74084283-74084000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
43, 130
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr1:74956109-74955844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
42, 131
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr1:75250024-75250300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
38, 20
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr1:77425700-77425423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
42, 65
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr1:79165173-79164894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
41, 145
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr1:81228426-81228148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
67, 29
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr1:84104141-84103870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
19, 54
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr1:86113493-86113208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
41, 93
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr1:87095318-87095023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr1:92996984-92996698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
24, 17
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr1:100474143-100474427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
41, 71
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr1:100551881-100552154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
37, 65
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr1:100576128-100575853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
35, 132
               

               
Conread position:
               
8-284
               

               
Cow position:
               
chr1:20667830-20667561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
43, 62
               

               
Conread position:
               
8-284
               

               
Cow position:
               
chr1:31934424-31934693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
36, 53
               

               
Conread position:
               
8-284
               

               
Cow position:
               
chr1:64302336-64302061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
43, 94
               

               
Conread position:
               
8-284
               

               
Cow position:
               
chr1:71227998-71228284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
40, 140
               

               
Conread position:
               
8-284
               

               
Cow position:
               
chr1:78091947-78092229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
8-284
               

               
Cow position:
               
chr1:99609280-99609556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 68
               

               
Conread position:
               
8-288
               

               
Cow position:
               
chr1:27463043-27463321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
57, 19
               

               
Conread position:
               
8-288
               

               
Cow position:
               
chr1:49082652-49082939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
34, 53
               

               
Conread position:
               
8-290
               

               
Cow position:
               
chr1:25734780-25735063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
41, 53
               

               
Conread position:
               
8-290
               

               
Cow position:
               
chr1:46030871-46031156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
40, 54
               

               
Conread position:
               
8-290
               

               
Cow position:
               
chr1:87072609-87072889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
66, 32
               

               
Conread position:
               
8-297
               

               
Cow position:
               
chr1:12464754-12464465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
42, 53
               

               
Conread position:
               
8-302
               

               
Cow position:
               
chr1:724649-724946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
41, 65
               

               
Conread position:
               
8-302
               

               
Cow position:
               
chr1:6826377-6826082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
215, 28
               

               
Conread position:
               
8-302
               

               
Cow position:
               
chr1:43311864-43311561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
71, 39
               

               
Conread position:
               
8-303
               

               
Cow position:
               
chr1:3607722-3608001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
40, 65
               

               
Conread position:
               
8-307
               

               
Cow position:
               
chr1:34856719-34856413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 289
               

               
Conread position:
               
8-307
               

               
Cow position:
               
chr1:72813526-72813829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 90
               

               
Conread position:
               
8-310
               

               
Cow position:
               
chr1:72103761-72104068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
8-314
               

               
Cow position:
               
chr1:34771592-34771280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
211, 67
               

               
Conread position:
               
8-332
               

               
Cow position:
               
chr1:99642454-99642127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
41, 62
               

               
Conread position:
               
9-185
               

               
Cow position:
               
chr1:92433913-92434087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
40, 52
               

               
Conread position:
               
9-232
               

               
Cow position:
               
chr1:100569067-100569290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
33, 51
               

               
Conread position:
               
9-233
               

               
Cow position:
               
chr1:65103532-65103751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
216, 118
               

               
Conread position:
               
9-233
               

               
Cow position:
               
chr1:80988258-80988481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
33, 82
               

               
Conread position:
               
9-234
               

               
Cow position:
               
chr1:26895063-26894836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
39, 20
               

               
Conread position:
               
9-242
               

               
Cow position:
               
chr1:19885296-19885524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
40, 15
               

               
Conread position:
               
9-258
               

               
Cow position:
               
chr1:101632426-101632180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
39, 64
               

               
Conread position:
               
9-266
               

               
Cow position:
               
chr1:76019783-76019526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
39, 69
               

               
Conread position:
               
9-270
               

               
Cow position:
               
chr1:31272528-31272275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
9-277
               

               
Cow position:
               
chr1:88397927-88397660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
40, 27
               

               
Conread position:
               
9-280
               

               
Cow position:
               
chr1:3419714-3419992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
37, 49
               

               
Conread position:
               
9-281
               

               
Cow position:
               
chr1:8129058-8128793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
38, 49
               

               
Conread position:
               
9-281
               

               
Cow position:
               
chr1:44506881-44507154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
38, 75
               

               
Conread position:
               
9-281
               

               
Cow position:
               
chr1:91816859-91816582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
40, 49
               

               
Conread position:
               
9-281
               

               
Cow position:
               
chr1:96305068-96304786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
9-283
               

               
Cow position:
               
chr1:627874-628156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
40, 52
               

               
Conread position:
               
9-283
               

               
Cow position:
               
chr1:20950634-20950905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
40, 60
               

               
Conread position:
               
9-283
               

               
Cow position:
               
chr1:38278121-38277838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
22, 82
               

               
Conread position:
               
9-283
               

               
Cow position:
               
chr1:47658260-47658536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
231, 64
               

               
Conread position:
               
9-283
               

               
Cow position:
               
chr1:49317583-49317313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
40, 63
               

               
Conread position:
               
9-283
               

               
Cow position:
               
chr1:91066240-91065969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
40, 76
               

               
Conread position:
               
9-283
               

               
Cow position:
               
chr1:96964233-96964507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
39, 50
               

               
Conread position:
               
9-284
               

               
Cow position:
               
chr1:8374543-8374264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
41, 49
               

               
Conread position:
               
9-284
               

               
Cow position:
               
chr1:84906156-84905871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
9-284
               

               
Cow position:
               
chr1:95662509-95662775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
37, 49
               

               
Conread position:
               
9-284
               

               
Cow position:
               
chr1:99512343-99512074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
204, 15
               

               
Conread position:
               
9-290
               

               
Cow position:
               
chr1:33409712-33409428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
33, 49
               

               
Conread position:
               
9-307
               

               
Cow position:
               
chr1:53327835-53327539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
114, 41
               

               
Conread position:
               
10-225
               

               
Cow position:
               
chr1:52052807-52052588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
10-232
               

               
Cow position:
               
chr1:97938883-97939089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
39, 56
               

               
Conread position:
               
10-234
               

               
Cow position:
               
chr1:26616161-26615943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
40, 51
               

               
Conread position:
               
10-234
               

               
Cow position:
               
chr1:81613303-81613530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
37, 60
               

               
Conread position:
               
10-238
               

               
Cow position:
               
chr1:74927798-74928024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
36, 9
               

               
Conread position:
               
10-252
               

               
Cow position:
               
chr1:86073509-86073750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
10-277
               

               
Cow position:
               
chr1:102306230-102305965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
18, 52
               

               
Conread position:
               
10-282
               

               
Cow position:
               
chr1:1499777-1499503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
213, 50
               

               
Conread position:
               
10-282
               

               
Cow position:
               
chr1:43389136-43388867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
36, 18
               

               
Conread position:
               
10-283
               

               
Cow position:
               
chr1:16767169-16766898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
39, 51
               

               
Conread position:
               
10-283
               

               
Cow position:
               
chr1:17196716-17196437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
39, 48
               

               
Conread position:
               
10-283
               

               
Cow position:
               
chr1:20104182-20104454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
39, 47
               

               
Conread position:
               
10-283
               

               
Cow position:
               
chr1:21577723-21577998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
39, 51
               

               
Conread position:
               
10-283
               

               
Cow position:
               
chr1:21954318-21954039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
37, 160
               

               
Conread position:
               
10-283
               

               
Cow position:
               
chr1:22730659-22730921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
208, 26
               

               
Conread position:
               
10-283
               

               
Cow position:
               
chr1:36998109-36998370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
208, 29
               

               
Conread position:
               
10-283
               

               
Cow position:
               
chr1:38753834-38754105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
15, 23
               

               
Conread position:
               
10-283
               

               
Cow position:
               
chr1:41696972-41697242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
37, 51
               

               
Conread position:
               
10-283
               

               
Cow position:
               
chr1:48105520-48105237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
37, 48
               

               
Conread position:
               
10-283
               

               
Cow position:
               
chr1:54156818-54156546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 40
               

               
Conread position:
               
10-283
               

               
Cow position:
               
chr1:55705336-55705059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
37, 48
               

               
Conread position:
               
10-283
               

               
Cow position:
               
chr1:57575845-57575576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
189, 47
               

               
Conread position:
               
10-283
               

               
Cow position:
               
chr1:82513442-82513164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
39, 51
               

               
Conread position:
               
10-283
               

               
Cow position:
               
chr1:89510009-89509740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
73, 47
               

               
Conread position:
               
10-283
               

               
Cow position:
               
chr1:98030828-98031103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
37, 192
               

               
Conread position:
               
10-284
               

               
Cow position:
               
chr1:58754882-58754609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
203, 134
               

               
Conread position:
               
10-284
               

               
Cow position:
               
chr1:78810953-78811227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
205, 33
               

               
Conread position:
               
10-284
               

               
Cow position:
               
chr1:94226638-94226355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
36, 44
               

               
Conread position:
               
10-288
               

               
Cow position:
               
chr1:874564-874856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
10-288
               

               
Cow position:
               
chr1:78794311-78794043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
38, 60
               

               
Conread position:
               
10-288
               

               
Cow position:
               
chr1:91023554-91023275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
37, 51
               

               
Conread position:
               
10-288
               

               
Cow position:
               
chr1:97231874-97232164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
40, 8
               

               
Conread position:
               
10-290
               

               
Cow position:
               
chr1:56618737-56618461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
37, 48
               

               
Conread position:
               
10-303
               

               
Cow position:
               
chr1:92963309-92963587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
40, 105
               

               
Conread position:
               
11-224
               

               
Cow position:
               
chr1:56832859-56832653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
204, 49
               

               
Conread position:
               
11-227
               

               
Cow position:
               
chr1:86340559-86340339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
38, 131
               

               
Conread position:
               
11-234
               

               
Cow position:
               
chr1:6972444-6972663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
37, 62
               

               
Conread position:
               
11-234
               

               
Cow position:
               
chr1:57420812-57420600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
38, 67
               

               
Conread position:
               
11-234
               

               
Cow position:
               
chr1:95153134-95153358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
37, 105
               

               
Conread position:
               
11-268
               

               
Cow position:
               
chr1:68619018-68618762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
38, 67
               

               
Conread position:
               
11-281
               

               
Cow position:
               
chr1:78079635-78079909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
38, 56
               

               
Conread position:
               
11-283
               

               
Cow position:
               
chr1:30983576-30983304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
33, 56
               

               
Conread position:
               
11-283
               

               
Cow position:
               
chr1:48444279-48444003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
38, 62
               

               
Conread position:
               
11-283
               

               
Cow position:
               
chr1:51417687-51417952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
14, 22
               

               
Conread position:
               
11-283
               

               
Cow position:
               
chr1:54478239-54478504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
31, 210
               

               
Conread position:
               
11-292
               

               
Cow position:
               
chr1:21787245-21787521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
44, 209
               

               
Conread position:
               
12-225
               

               
Cow position:
               
chr1:26427946-26427734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
68, 17
               

               
Conread position:
               
12-233
               

               
Cow position:
               
chr1:80422196-80422407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
42, 61
               

               
Conread position:
               
12-234
               

               
Cow position:
               
chr1:8347039-8347259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
36, 64
               

               
Conread position:
               
12-240
               

               
Cow position:
               
chr1:28176925-28177147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
39, 55
               

               
Conread position:
               
12-280
               

               
Cow position:
               
chr1:33913736-33914016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
35, 66
               

               
Conread position:
               
13-249
               

               
Cow position:
               
chr1:47233562-47233328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
34, 45
               

               
Conread position:
               
13-253
               

               
Cow position:
               
chr1:42869022-42868787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
33, 66
               

               
Conread position:
               
13-270
               

               
Cow position:
               
chr1:49433344-49433086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
36, 60
               

               
Conread position:
               
13-283
               

               
Cow position:
               
chr1:6166159-6166420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
64, 34
               

               
Conread position:
               
13-283
               

               
Cow position:
               
chr1:25383580-25383857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
34, 98
               

               
Conread position:
               
13-283
               

               
Cow position:
               
chr1:47790749-47790480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 156
               

               
Conread position:
               
13-283
               

               
Cow position:
               
chr1:61846062-61846346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
36, 48
               

               
Conread position:
               
13-283
               

               
Cow position:
               
chr1:88913236-88913508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
34, 14
               

               
Conread position:
               
13-283
               

               
Cow position:
               
chr1:95499577-95499308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
34, 76
               

               
Conread position:
               
13-288
               

               
Cow position:
               
chr1:35671456-35671729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
9, 48
               

               
Conread position:
               
13-290
               

               
Cow position:
               
chr1:4391366-4391073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
14-208
               

               
Cow position:
               
chr1:89349880-89350075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
33, 44
               

               
Conread position:
               
14-209
               

               
Cow position:
               
chr1:12978598-12978793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
33, 44
               

               
Conread position:
               
14-233
               

               
Cow position:
               
chr1:7023038-7023256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
64, 37
               

               
Conread position:
               
14-233
               

               
Cow position:
               
chr1:84255681-84255902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
33, 44
               

               
Conread position:
               
14-234
               

               
Cow position:
               
chr1:45553326-45553107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
33, 126
               

               
Conread position:
               
14-262
               

               
Cow position:
               
chr1:73960623-73960860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
33, 44
               

               
Conread position:
               
14-279
               

               
Cow position:
               
chr1:78096842-78097110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
33, 67
               

               
Conread position:
               
14-280
               

               
Cow position:
               
chr1:13548066-13547795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
35, 47
               

               
Conread position:
               
14-280
               

               
Cow position:
               
chr1:72092707-72092438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
25, 20
               

               
Conread position:
               
14-283
               

               
Cow position:
               
chr1:22525793-22526062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
35, 206
               

               
Conread position:
               
14-283
               

               
Cow position:
               
chr1:43505442-43505712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
33, 66
               

               
Conread position:
               
14-283
               

               
Cow position:
               
chr1:49825152-49824877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
14-283
               

               
Cow position:
               
chr1:75744778-75745048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
33, 44
               

               
Conread position:
               
14-283
               

               
Cow position:
               
chr1:89448815-89449086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
33, 44
               

               
Conread position:
               
14-288
               

               
Cow position:
               
chr1:86682644-86682374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
70, 58
               

               
Conread position:
               
14-288
               

               
Cow position:
               
chr1:100761993-100762267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
33, 72
               

               
Conread position:
               
14-292
               

               
Cow position:
               
chr1:70538525-70538803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
33, 207
               

               
Conread position:
               
14-298
               

               
Cow position:
               
chr1:73458176-73457890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
33, 47
               

               
Conread position:
               
15-281
               

               
Cow position:
               
chr1:92580670-92580945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
27, 186
               

               
Conread position:
               
16-282
               

               
Cow position:
               
chr1:83072358-83072629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
36, 12
               

               
Conread position:
               
19-234
               

               
Cow position:
               
chr1:98551639-98551855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
28, 39
               

               
Conread position:
               
19-253
               

               
Cow position:
               
chr1:52994943-52995182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
19-259
               

               
Cow position:
               
chr1:27881535-27881767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
28, 42
               

               
Conread position:
               
19-275
               

               
Cow position:
               
chr1:68217441-68217183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
27, 39
               

               
Conread position:
               
19-279
               

               
Cow position:
               
chr1:22728974-22729239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
19-281
               

               
Cow position:
               
chr1:98583680-98583934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
23, 54
               

               
Conread position:
               
19-283
               

               
Cow position:
               
chr1:7971338-7971592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
30, 54
               

               
Conread position:
               
19-283
               

               
Cow position:
               
chr1:42175647-42175916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
31, 39
               

               
Conread position:
               
19-283
               

               
Cow position:
               
chr1:56225389-56225654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
28, 58
               

               
Conread position:
               
19-283
               

               
Cow position:
               
chr1:79640368-79640101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
19-283
               

               
Cow position:
               
chr1:85028875-85029124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
23, 39
               

               
Conread position:
               
19-283
               

               
Cow position:
               
chr1:97090244-97090505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
11, 41
               

               
Conread position:
               
19-283
               

               
Cow position:
               
chr1:97794626-97794361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
30, 61
               

               
Conread position:
               
19-283
               

               
Cow position:
               
chr1:98467730-98467990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
215, 27
               

               
Conread position:
               
19-284
               

               
Cow position:
               
chr1:5128366-5128644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
19-284
               

               
Cow position:
               
chr1:31795082-31794817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
31, 54
               

               
Conread position:
               
19-288
               

               
Cow position:
               
chr1:62519281-62519559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
30, 42
               

               
Conread position:
               
19-298
               

               
Cow position:
               
chr1:69227527-69227248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
31, 42
               

               
Conread position:
               
20-219
               

               
Cow position:
               
chr1:98594496-98594686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
26, 56
               

               
Conread position:
               
20-234
               

               
Cow position:
               
chr1:68672676-68672466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
29, 103
               

               
Conread position:
               
20-283
               

               
Cow position:
               
chr1:10942174-10941910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 161
               

               
Conread position:
               
20-283
               

               
Cow position:
               
chr1:10964212-10964476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
22, 161
               

               
Conread position:
               
20-283
               

               
Cow position:
               
chr1:96081404-96081666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
33, 52
               

               
Conread position:
               
20-283
               

               
Cow position:
               
chr1:102753775-102754039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
7, 59
               

               
Conread position:
               
20-284
               

               
Cow position:
               
chr1:26178889-26178619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
29, 38
               

               
Conread position:
               
20-290
               

               
Cow position:
               
chr1:52139710-52139433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
12, 52
               

               
Conread position:
               
20-297
               

               
Cow position:
               
chr1:56225711-56225982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
28, 53
               

               
Conread position:
               
20-298
               

               
Cow position:
               
chr1:45019884-45019602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
28, 207
               

               
Conread position:
               
21-290
               

               
Cow position:
               
chr1:78066616-78066348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
13, 73
               

               
Conread position:
               
25-241
               

               
Cow position:
               
chr1:58036947-58037157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
23, 48
               

               
Conread position:
               
26-234
               

               
Cow position:
               
chr1:186347-186143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
16, 55
               

               
Conread position:
               
26-234
               

               
Cow position:
               
chr1:5539348-5539140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
23, 32
               

               
Conread position:
               
26-262
               

               
Cow position:
               
chr1:91811711-91811949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
20, 46
               

               
Conread position:
               
26-282
               

               
Cow position:
               
chr1:61884843-61885099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
198, 31
               

               
Conread position:
               
26-283
               

               
Cow position:
               
chr1:38418958-38419214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
194, 40
               

               
Conread position:
               
26-283
               

               
Cow position:
               
chr1:70828829-70829084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
21, 32
               

               
Conread position:
               
26-283
               

               
Cow position:
               
chr1:89158200-89157942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
21, 215
               

               
Conread position:
               
26-284
               

               
Cow position:
               
chr1:2971840-2972109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
26-284
               

               
Cow position:
               
chr1:79135208-79135468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
16, 106
               

               
Conread position:
               
26-288
               

               
Cow position:
               
chr1:69678399-69678130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
21, 31
               

               
Conread position:
               
26-290
               

               
Cow position:
               
chr1:3923865-3923609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
26-307
               

               
Cow position:
               
chr1:84812013-84811731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
21, 32
               

               
Conread position:
               
27-281
               

               
Cow position:
               
chr1:51394346-51394604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
25, 45
               

               
Conread position:
               
27-297
               

               
Cow position:
               
chr1:45223510-45223778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
24, 51
               

               
Conread position:
               
28-231
               

               
Cow position:
               
chr1:78068133-78067937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
21, 43
               

               
Conread position:
               
28-233
               

               
Cow position:
               
chr1:80336313-80336113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
186, 23
               

               
Conread position:
               
28-234
               

               
Cow position:
               
chr1:81580101-81580313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
21, 131
               

               
Conread position:
               
28-260
               

               
Cow position:
               
chr1:11226313-11226085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
21, 33
               

               
Conread position:
               
28-264
               

               
Cow position:
               
chr1:53458628-53458867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
19, 50
               

               
Conread position:
               
28-283
               

               
Cow position:
               
chr1:19515683-19515429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
21, 33
               

               
Conread position:
               
28-283
               

               
Cow position:
               
chr1:22823835-22824097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 0
               

               
Conread position:
               
28-283
               

               
Cow position:
               
chr1:37726488-37726226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
21, 33
               

               
Conread position:
               
30-283
               

               
Cow position:
               
chr1:95072263-95072531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
17, 28
               

               
Conread position:
               
31-229
               

               
Cow position:
               
chr1:68676296-68676493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
16, 42
               

               
Conread position:
               
31-234
               

               
Cow position:
               
chr1:93554773-93554972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
18, 39
               

               
Conread position:
               
31-234
               

               
Cow position:
               
chr1:98575980-98576179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
13, 57
               

               
Conread position:
               
31-255
               

               
Cow position:
               
chr1:52039567-52039793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
16, 27
               

               
Conread position:
               
31-282
               

               
Cow position:
               
chr1:101866564-101866313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
18, 36
               

               
Conread position:
               
31-283
               

               
Cow position:
               
chr1:6589975-6590225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
18, 30
               

               
Conread position:
               
31-283
               

               
Cow position:
               
chr1:7739881-7740131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
237, 121
               

               
Conread position:
               
31-283
               

               
Cow position:
               
chr1:68862967-68863207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
38, 109
               

               
Conread position:
               
31-290
               

               
Cow position:
               
chr1:8551-8813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
20, 44
               

               
Conread position:
               
32-281
               

               
Cow position:
               
chr1:51609309-51609564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
14, 241
               

               
Conread position:
               
32-281
               

               
Cow position:
               
chr1:60986921-60987178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
32-281
               

               
Cow position:
               
chr1:96019169-96019418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
10, 38
               

               
Conread position:
               
32-319
               

               
Cow position:
               
chr1:90621572-90621284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
48, 26
               

               
Conread position:
               
33-233
               

               
Cow position:
               
chr1:8624513-8624315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
16, 40
               

               
Conread position:
               
33-283
               

               
Cow position:
               
chr1:33998693-33998937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
15, 106
               

               
Conread position:
               
33-283
               

               
Cow position:
               
chr1:81390853-81391110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
5, 124
               

               
Conread position:
               
34-283
               

               
Cow position:
               
chr1:48206598-48206352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
13, 24
               

               
Conread position:
               
34-283
               

               
Cow position:
               
chr1:55429021-55428765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 44
               

               
Conread position:
               
34-284
               

               
Cow position:
               
chr1:5776078-5776335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
8, 25
               

               
Conread position:
               
37-283
               

               
Cow position:
               
chr1:22035549-22035796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
11, 56
               

               
Conread position:
               
38-241
               

               
Cow position:
               
chr1:53308452-53308253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
11, 21
               

               
Conread position:
               
39-227
               

               
Cow position:
               
chr1:42360218-42360417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
39-283
               

               
Cow position:
               
chr1:29626968-29626722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
197, 19
               

               
Conread position:
               
39-283
               

               
Cow position:
               
chr1:101507300-101507538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
9, 42
               

               
Conread position:
               
39-288
               

               
Cow position:
               
chr1:86578902-86579166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
9, 93
               

               
Conread position:
               
40-280
               

               
Cow position:
               
chr1:30035157-30035409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
40, 139
               

               
Conread position:
               
40-281
               

               
Cow position:
               
chr1:41289833-41289593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
156, 18
               

               
Conread position:
               
40-283
               

               
Cow position:
               
chr1:6394503-6394745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
87, 20
               

               
Conread position:
               
40-283
               

               
Cow position:
               
chr1:31357568-31357326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
10, 143
               

               
Conread position:
               
40-283
               

               
Cow position:
               
chr1:59518863-59519099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
40, 98
               

               
Conread position:
               
40-283
               

               
Cow position:
               
chr1:79718745-79718996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
44, 70
               

               
Conread position:
               
40-283
               

               
Cow position:
               
chr1:88359825-88360073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
183, 28
               

               
Conread position:
               
45-229
               

               
Cow position:
               
chr1:95974344-95974530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
32, 177
               

               
Conread position:
               
45-277
               

               
Cow position:
               
chr1:30862462-30862230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
178, 100
               

               
Conread position:
               
45-281
               

               
Cow position:
               
chr1:57089734-57089492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
26, 15
               

               
Conread position:
               
45-283
               

               
Cow position:
               
chr1:500122-500364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
195, 0
               

               
Conread position:
               
45-283
               

               
Cow position:
               
chr1:3323815-3324062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
113, 153
               

               
Conread position:
               
45-283
               

               
Cow position:
               
chr1:50432538-50432293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
70, 15
               

               
Conread position:
               
45-283
               

               
Cow position:
               
chr1:73545958-73545720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
67, 15
               

               
Conread position:
               
45-283
               

               
Cow position:
               
chr1:76613187-76612944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
63, 34
               

               
Conread position:
               
45-283
               

               
Cow position:
               
chr1:77739665-77739912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
12, 159
               

               
Conread position:
               
45-284
               

               
Cow position:
               
chr1:86688206-86687972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
45-286
               

               
Cow position:
               
chr1:83659331-83659085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
17, 13
               

               
Conread position:
               
46-227
               

               
Cow position:
               
chr1:94261489-94261664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
61, 30
               

               
Conread position:
               
46-241
               

               
Cow position:
               
chr1:93043970-93044160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
30, 14
               

               
Conread position:
               
46-283
               

               
Cow position:
               
chr1:48618289-48618059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
46-283
               

               
Cow position:
               
chr1:74751685-74751440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
70, 27
               

               
Conread position:
               
46-283
               

               
Cow position:
               
chr1:79003924-79004164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
33, 14
               

               
Conread position:
               
46-283
               

               
Cow position:
               
chr1:80584381-80584616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
178, 14
               

               
Conread position:
               
47-281
               

               
Cow position:
               
chr1:68688143-68688380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
180, 15
               

               
Conread position:
               
48-262
               

               
Cow position:
               
chr1:84768927-84768714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
188, 25
               

               
Conread position:
               
48-270
               

               
Cow position:
               
chr1:87197768-87197995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
21, 9
               

               
Conread position:
               
48-281
               

               
Cow position:
               
chr1:41056629-41056866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
17, 9
               

               
Conread position:
               
48-281
               

               
Cow position:
               
chr1:64113842-64113614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
27, 168
               

               
Conread position:
               
48-283
               

               
Cow position:
               
chr1:29935434-29935203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
173, 59
               

               
Conread position:
               
48-283
               

               
Cow position:
               
chr1:37322049-37321822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
21, 91
               

               
Conread position:
               
48-283
               

               
Cow position:
               
chr1:46143510-46143279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
218, 32
               

               
Conread position:
               
48-283
               

               
Cow position:
               
chr1:52912946-52912704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
24, 9
               

               
Conread position:
               
48-283
               

               
Cow position:
               
chr1:68855115-68855354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
32, 9
               

               
Conread position:
               
48-284
               

               
Cow position:
               
chr1:61012262-61012495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
27, 152
               

               
Conread position:
               
48-290
               

               
Cow position:
               
chr1:5597257-5597017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
20, 28
               

               
Conread position:
               
49-275
               

               
Cow position:
               
chr1:73020709-73020479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
170, 9
               

               
Conread position:
               
49-282
               

               
Cow position:
               
chr1:60490456-60490694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
45, 35
               

               
Conread position:
               
49-283
               

               
Cow position:
               
chr1:44946711-44946937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
171, 8
               

               
Conread position:
               
49-283
               

               
Cow position:
               
chr1:60044939-60045175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
58, 45
               

               
Conread position:
               
49-290
               

               
Cow position:
               
chr1:97717623-97717381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
36, 130
               

               
Conread position:
               
51-281
               

               
Cow position:
               
chr1:81290459-81290690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
14, 6
               

               
Conread position:
               
51-283
               

               
Cow position:
               
chr1:52662219-52661988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
183, 57
               

               
Conread position:
               
51-284
               

               
Cow position:
               
chr1:97833665-97833886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
29, 6
               

               
Conread position:
               
51-290
               

               
Cow position:
               
chr1:61742014-61741769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
28, 6
               

               
Conread position:
               
51-297
               

               
Cow position:
               
chr1:92590150-92590373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
30, 20
               

               
Conread position:
               
52-281
               

               
Cow position:
               
chr1:40599997-40600211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
24, 143
               

               
Conread position:
               
52-283
               

               
Cow position:
               
chr1:71790193-71789960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
171, 8
               

               
Conread position:
               
52-284
               

               
Cow position:
               
chr1:71770354-71770117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
171, 19
               

               
Conread position:
               
53-216
               

               
Cow position:
               
chr1:43312075-43311913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
56-273
               

               
Cow position:
               
chr1:71295336-71295121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
63, 19
               

               
Conread position:
               
56-290
               

               
Cow position:
               
chr1:101714079-101714311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
155, 40
               

               
Conread position:
               
57-281
               

               
Cow position:
               
chr1:62997757-62997987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
14, 82
               

               
Conread position:
               
57-283
               

               
Cow position:
               
chr1:8287671-8287442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
161, 131
               

               
Conread position:
               
57-283
               

               
Cow position:
               
chr1:26895852-26895624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
169, 0
               

               
Conread position:
               
57-283
               

               
Cow position:
               
chr1:81569071-81568841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
57-283
               

               
Cow position:
               
chr1:85771969-85772194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
134, 28
               

               
Conread position:
               
57-297
               

               
Cow position:
               
chr1:89388298-89388543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
22, 239
               

               
Conread position:
               
59-283
               

               
Cow position:
               
chr1:21681577-21681346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
59-283
               

               
Cow position:
               
chr1:22192730-22192958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
155, 0
               

               
Conread position:
               
60-233
               

               
Cow position:
               
chr1:8670736-8670907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
130, 15
               

               
Conread position:
               
60-234
               

               
Cow position:
               
chr1:71916155-71915984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
60-283
               

               
Cow position:
               
chr1:17055959-17056178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
158, 11
               

               
Conread position:
               
60-283
               

               
Cow position:
               
chr1:21093079-21093307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
163, 142
               

               
Conread position:
               
60-283
               

               
Cow position:
               
chr1:67919096-67919316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
14, 148
               

               
Conread position:
               
60-283
               

               
Cow position:
               
chr1:72422445-72422218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
158, 11
               

               
Conread position:
               
60-283
               

               
Cow position:
               
chr1:89381237-89381462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
15, 32
               

               
Conread position:
               
60-283
               

               
Cow position:
               
chr1:95835833-95835607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
163, 15
               

               
Conread position:
               
60-288
               

               
Cow position:
               
chr1:197044-196813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
19, 144
               

               
Conread position:
               
61-283
               

               
Cow position:
               
chr1:21955408-21955184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
175, 22
               

               
Conread position:
               
61-283
               

               
Cow position:
               
chr1:29474384-29474164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
158, 137
               

               
Conread position:
               
61-283
               

               
Cow position:
               
chr1:81477907-81477675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
62-266
               

               
Cow position:
               
chr1:22827121-22827317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
91, 152
               

               
Conread position:
               
62-269
               

               
Cow position:
               
chr1:52496737-52496947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
161, 15
               

               
Conread position:
               
62-270
               

               
Cow position:
               
chr1:89158737-89158530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
17, 66
               

               
Conread position:
               
62-277
               

               
Cow position:
               
chr1:150961-150741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
153, 0
               

               
Conread position:
               
62-281
               

               
Cow position:
               
chr1:31765411-31765184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
10, 27
               

               
Conread position:
               
62-283
               

               
Cow position:
               
chr1:67654356-67654137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
152, 209
               

               
Conread position:
               
62-283
               

               
Cow position:
               
chr1:81481416-81481197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
63-279
               

               
Cow position:
               
chr1:54206849-54206635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
170, 75
               

               
Conread position:
               
63-284
               

               
Cow position:
               
chr1:101634678-101634888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
64-226
               

               
Cow position:
               
chr1:42178706-42178873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
64-281
               

               
Cow position:
               
chr1:1053547-1053768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
68, 42
               

               
Conread position:
               
64-283
               

               
Cow position:
               
chr1:75382949-75383151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
64-283
               

               
Cow position:
               
chr1:92523979-92524205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
64-283
               

               
Cow position:
               
chr1:97144495-97144283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
92, 8
               

               
Conread position:
               
65-283
               

               
Cow position:
               
chr1:82936630-82936417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
149, 0
               

               
Conread position:
               
66-283
               

               
Cow position:
               
chr1:11729145-11729359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
66-283
               

               
Cow position:
               
chr1:98911976-98912196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
132, 70
               

               
Conread position:
               
66-283
               

               
Cow position:
               
chr1:101837010-101837243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
67-280
               

               
Cow position:
               
chr1:3942247-3942032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
16, 136
               

               
Conread position:
               
67-283
               

               
Cow position:
               
chr1:82537898-82538115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
9, 45
               

               
Conread position:
               
67-288
               

               
Cow position:
               
chr1:98897725-98897497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
153, 214
               

               
Conread position:
               
67-302
               

               
Cow position:
               
chr1:49980678-49980919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
12, 87
               

               
Conread position:
               
68-283
               

               
Cow position:
               
chr1:6731152-6731367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
157, 11
               

               
Conread position:
               
68-288
               

               
Cow position:
               
chr1:6760064-6759851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
69-281
               

               
Cow position:
               
chr1:1496562-1496341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
69-282
               

               
Cow position:
               
chr1:81858931-81858714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
69-283
               

               
Cow position:
               
chr1:5751284-5751503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
152, 176
               

               
Conread position:
               
69-283
               

               
Cow position:
               
chr1:41027048-41027260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
150, 6
               

               
Conread position:
               
69-283
               

               
Cow position:
               
chr1:42256532-42256317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
10, 204
               

               
Conread position:
               
69-283
               

               
Cow position:
               
chr1:81515204-81515427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
69-303
               

               
Cow position:
               
chr1:83092846-83093072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
151, 73
               

               
Conread position:
               
71-281
               

               
Cow position:
               
chr1:8271881-8271666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
156, 196
               

               
Conread position:
               
71-281
               

               
Cow position:
               
chr1:98046025-98046237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
22, 17
               

               
Conread position:
               
71-283
               

               
Cow position:
               
chr1:20125771-20125983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
146, 13
               

               
Conread position:
               
72-281
               

               
Cow position:
               
chr1:86057102-86056892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
6, 87
               

               
Conread position:
               
72-283
               

               
Cow position:
               
chr1:83025189-83024977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
119, 5
               

               
Conread position:
               
72-283
               

               
Cow position:
               
chr1:102768156-102768363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
23, 7
               

               
Conread position:
               
73-281
               

               
Cow position:
               
chr1:91649443-91649229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
34, 83
               

               
Conread position:
               
73-283
               

               
Cow position:
               
chr1:36688404-36688192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
7, 122
               

               
Conread position:
               
73-297
               

               
Cow position:
               
chr1:63078986-63079201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
74-219
               

               
Cow position:
               
chr1:76436456-76436601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
74-283
               

               
Cow position:
               
chr1:4444865-4444651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
166, 14
               

               
Conread position:
               
74-283
               

               
Cow position:
               
chr1:38706878-38706665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
160, 140
               

               
Conread position:
               
74-283
               

               
Cow position:
               
chr1:55229952-55230161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
33, 27
               

               
Conread position:
               
74-283
               

               
Cow position:
               
chr1:74929741-74929520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
74-283
               

               
Cow position:
               
chr1:100823013-100823228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
17, 44
               

               
Conread position:
               
74-284
               

               
Cow position:
               
chr1:63530534-63530748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
74-297
               

               
Cow position:
               
chr1:95618617-95618841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
10, 219
               

               
Conread position:
               
75-237
               

               
Cow position:
               
chr1:20864034-20864192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
75-244
               

               
Cow position:
               
chr1:89342009-89341832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
42, 38
               

               
Conread position:
               
75-282
               

               
Cow position:
               
chr1:55753238-55753032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
75-283
               

               
Cow position:
               
chr1:852147-852361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
151, 0
               

               
Conread position:
               
75-283
               

               
Cow position:
               
chr1:76037539-76037324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
75-284
               

               
Cow position:
               
chr1:15102866-15103073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
148, 40
               

               
Conread position:
               
76-283
               

               
Cow position:
               
chr1:61011159-61011363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
154, 0
               

               
Conread position:
               
76-283
               

               
Cow position:
               
chr1:93590608-93590402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
150, 196
               

               
Conread position:
               
77-229
               

               
Cow position:
               
chr1:54157273-54157427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
77-268
               

               
Cow position:
               
chr1:3965815-3966007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
151, 57
               

               
Conread position:
               
77-268
               

               
Cow position:
               
chr1:70422284-70422480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
144, 19
               

               
Conread position:
               
77-270
               

               
Cow position:
               
chr1:85818230-85818427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
149, 0
               

               
Conread position:
               
77-277
               

               
Cow position:
               
chr1:53397954-53398155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
77-280
               

               
Cow position:
               
chr1:66752650-66752447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
77-283
               

               
Cow position:
               
chr1:10633025-10633228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
77-283
               

               
Cow position:
               
chr1:21560991-21561208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
77-283
               

               
Cow position:
               
chr1:54267958-54267752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
141, 57
               

               
Conread position:
               
77-283
               

               
Cow position:
               
chr1:73721339-73721552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
115, 128
               

               
Conread position:
               
77-288
               

               
Cow position:
               
chr1:42887298-42887087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
77-290
               

               
Cow position:
               
chr1:90904776-90904562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
147, 14
               

               
Conread position:
               
77-298
               

               
Cow position:
               
chr1:62034849-62034632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
148, 87
               

               
Conread position:
               
77-302
               

               
Cow position:
               
chr1:27959571-27959338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
134, 65
               

               
Conread position:
               
77-303
               

               
Cow position:
               
chr1:67529034-67529262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
146, 217
               

               
Conread position:
               
78-283
               

               
Cow position:
               
chr1:20871579-20871368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
78-283
               

               
Cow position:
               
chr1:24530482-24530686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
78-283
               

               
Cow position:
               
chr1:42152505-42152301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
43, 120
               

               
Conread position:
               
78-283
               

               
Cow position:
               
chr1:102468636-102468434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
169, 13
               

               
Conread position:
               
78-288
               

               
Cow position:
               
chr1:78857349-78857133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
79-234
               

               
Cow position:
               
chr1:52487999-52487845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
79-234
               

               
Cow position:
               
chr1:67918738-67918893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
79-270
               

               
Cow position:
               
chr1:49334411-49334214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
124, 47
               

               
Conread position:
               
79-280
               

               
Cow position:
               
chr1:92370388-92370183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
148, 124
               

               
Conread position:
               
79-283
               

               
Cow position:
               
chr1:76739928-76739726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
79-284
               

               
Cow position:
               
chr1:9637010-9637219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
16, 9
               

               
Conread position:
               
80-255
               

               
Cow position:
               
chr1:19962035-19962209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
144, 58
               

               
Conread position:
               
80-283
               

               
Cow position:
               
chr1:51860579-51860376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
52, 20
               

               
Conread position:
               
80-289
               

               
Cow position:
               
chr1:62964248-62964462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
81-283
               

               
Cow position:
               
chr1:102648261-102648468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
81-284
               

               
Cow position:
               
chr1:69940840-69940635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
81-302
               

               
Cow position:
               
chr1:76735495-76735269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
26, 16
               

               
Conread position:
               
82-281
               

               
Cow position:
               
chr1:242541-242738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
82-283
               

               
Cow position:
               
chr1:90267705-90267912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
131, 31
               

               
Conread position:
               
82-288
               

               
Cow position:
               
chr1:45315652-45315438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
151, 0
               

               
Conread position:
               
83-280
               

               
Cow position:
               
chr1:61005577-61005375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
140, 72
               

               
Conread position:
               
84-283
               

               
Cow position:
               
chr1:97540619-97540827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
84-288
               

               
Cow position:
               
chr1:759432-759219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
86-269
               

               
Cow position:
               
chr1:6031612-6031801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
87-240
               

               
Cow position:
               
chr1:24561520-24561369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
87-240
               

               
Cow position:
               
chr1:24570958-24570807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
87-243
               

               
Cow position:
               
chr1:19304561-19304715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
87-283
               

               
Cow position:
               
chr1:4582539-4582738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
7, 66
               

               
Conread position:
               
87-283
               

               
Cow position:
               
chr1:6381761-6381964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
146, 93
               

               
Conread position:
               
88-217
               

               
Cow position:
               
chr1:85712430-85712558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
88-282
               

               
Cow position:
               
chr1:22461248-22461052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
88-283
               

               
Cow position:
               
chr1:68688573-68688767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
147, 125
               

               
Conread position:
               
88-288
               

               
Cow position:
               
chr1:95152861-95153067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
91-226
               

               
Cow position:
               
chr1:56229231-56229367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
91-283
               

               
Cow position:
               
chr1:41138151-41137960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
91-283
               

               
Cow position:
               
chr1:96558857-96558658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
91-283
               

               
Cow position:
               
chr1:98060053-98060247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
15, 21
               

               
Conread position:
               
91-284
               

               
Cow position:
               
chr1:52618822-52619019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
20, 9
               

               
Conread position:
               
92-282
               

               
Cow position:
               
chr1:29329535-29329733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
93-283
               

               
Cow position:
               
chr1:82336673-82336859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
121, 93
               

               
Conread position:
               
93-283
               

               
Cow position:
               
chr1:100573633-100573440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
93-307
               

               
Cow position:
               
chr1:69691720-69691500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
130, 203
               

               
Conread position:
               
93-311
               

               
Cow position:
               
chr1:73551515-73551289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
80, 203
               

               
Conread position:
               
94-268
               

               
Cow position:
               
chr1:100852705-100852880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
129, 160
               

               
Conread position:
               
97-283
               

               
Cow position:
               
chr1:29671225-29671032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
124, 183
               

               
Conread position:
               
97-283
               

               
Cow position:
               
chr1:101007430-101007248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
100-283
               

               
Cow position:
               
chr1:56913527-56913344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
119, 98
               

               
Conread position:
               
100-290
               

               
Cow position:
               
chr1:54569699-54569896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
101-283
               

               
Cow position:
               
chr1:25022072-25021890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
103-283
               

               
Cow position:
               
chr1:15875665-15875847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
103-283
               

               
Cow position:
               
chr1:76518427-76518613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
103-283
               

               
Cow position:
               
chr1:81364265-81364451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
103-283
               

               
Cow position:
               
chr1:84815132-84815323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
103-283
               

               
Cow position:
               
chr1:85339392-85339565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
104-283
               

               
Cow position:
               
chr1:101439476-101439301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
54, 30
               

               
Conread position:
               
105-283
               

               
Cow position:
               
chr1:30948999-30949170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
105-283
               

               
Cow position:
               
chr1:71946077-71945892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
113, 167
               

               
Conread position:
               
105-283
               

               
Cow position:
               
chr1:95156957-95156777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
105-283
               

               
Cow position:
               
chr1:99605180-99605004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
115, 166
               

               
Conread position:
               
105-292
               

               
Cow position:
               
chr1:70483327-70483138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
106-233
               

               
Cow position:
               
chr1:92603027-92603156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
106-280
               

               
Cow position:
               
chr1:52450779-52450951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
106-281
               

               
Cow position:
               
chr1:31630279-31630097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
106-281
               

               
Cow position:
               
chr1:87149807-87149630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
106-283
               

               
Cow position:
               
chr1:78030024-78029838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
106-283
               

               
Cow position:
               
chr1:97536296-97536466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
15, 98
               

               
Conread position:
               
106-283
               

               
Cow position:
               
chr1:101691888-101692063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
106-284
               

               
Cow position:
               
chr1:34001055-34001232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
33, 42
               

               
Conread position:
               
106-292
               

               
Cow position:
               
chr1:50708158-50708350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
107-241
               

               
Cow position:
               
chr1:46100831-46100699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
107-275
               

               
Cow position:
               
chr1:73534632-73534459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
113, 100
               

               
Conread position:
               
107-283
               

               
Cow position:
               
chr1:23633921-23633739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
107-283
               

               
Cow position:
               
chr1:31340762-31340579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
107-283
               

               
Cow position:
               
chr1:47967014-47966832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
107-283
               

               
Cow position:
               
chr1:85622538-85622720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
107-283
               

               
Cow position:
               
chr1:98557110-98556930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
107-283
               

               
Cow position:
               
chr1:101883387-101883203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
110-281
               

               
Cow position:
               
chr1:524820-524992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
114, 101
               

               
Conread position:
               
110-282
               

               
Cow position:
               
chr1:19599349-19599173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
114, 90
               

               
Conread position:
               
110-283
               

               
Cow position:
               
chr1:55685966-55685790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
110-283
               

               
Cow position:
               
chr1:63460890-63461066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
120, 101
               

               
Conread position:
               
112-227
               

               
Cow position:
               
chr1:43148531-43148416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
112-281
               

               
Cow position:
               
chr1:78793989-78793817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
112-283
               

               
Cow position:
               
chr1:4294358-4294533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
120, 88
               

               
Conread position:
               
112-283
               

               
Cow position:
               
chr1:6790787-6790962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
116, 46
               

               
Conread position:
               
112-283
               

               
Cow position:
               
chr1:40303565-40303736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
112-283
               

               
Cow position:
               
chr1:63994541-63994367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
112-283
               

               
Cow position:
               
chr1:69532509-69532338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
112-283
               

               
Cow position:
               
chr1:81668803-81668624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
112-283
               

               
Cow position:
               
chr1:94823378-94823201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
112-290
               

               
Cow position:
               
chr1:69411684-69411500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
11, 152
               

               
Conread position:
               
113-234
               

               
Cow position:
               
chr1:45673769-45673890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
113-278
               

               
Cow position:
               
chr1:81471368-81471534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
14, 62
               

               
Conread position:
               
113-281
               

               
Cow position:
               
chr1:20537220-20537388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
113-283
               

               
Cow position:
               
chr1:40181610-40181433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
113-283
               

               
Cow position:
               
chr1:58420218-58420386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
113-283
               

               
Cow position:
               
chr1:61134427-61134603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
113-283
               

               
Cow position:
               
chr1:63905244-63905076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
113-283
               

               
Cow position:
               
chr1:65030082-65030258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
113-283
               

               
Cow position:
               
chr1:84594903-84595079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
113-283
               

               
Cow position:
               
chr1:99637239-99637063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
113-288
               

               
Cow position:
               
chr1:39684129-39683949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
107, 71
               

               
Conread position:
               
113-298
               

               
Cow position:
               
chr1:81638563-81638742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
114-283
               

               
Cow position:
               
chr1:49297667-49297839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
114-288
               

               
Cow position:
               
chr1:32014212-32014384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
115-283
               

               
Cow position:
               
chr1:102730745-102730569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
117-283
               

               
Cow position:
               
chr1:11708999-11708836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
119, 77
               

               
Conread position:
               
117-283
               

               
Cow position:
               
chr1:31801901-31801732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
36, 135
               

               
Conread position:
               
117-283
               

               
Cow position:
               
chr1:71636304-71636140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
117-283
               

               
Cow position:
               
chr1:90192435-90192608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
122-268
               

               
Cow position:
               
chr1:102797974-102797822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
122-283
               

               
Cow position:
               
chr1:4362033-4361864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
122-283
               

               
Cow position:
               
chr1:78781998-78782174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
124-231
               

               
Cow position:
               
chr1:57359488-57359595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
124-270
               

               
Cow position:
               
chr1:70146885-70146733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
124-281
               

               
Cow position:
               
chr1:1802193-1802356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
124-283
               

               
Cow position:
               
chr1:69378573-69378410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
95, 78
               

               
Conread position:
               
124-283
               

               
Cow position:
               
chr1:77685955-77685790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
124-283
               

               
Cow position:
               
chr1:89437692-89437540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
124-283
               

               
Cow position:
               
chr1:98742048-98742204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
107, 32
               

               
Conread position:
               
124-284
               

               
Cow position:
               
chr1:1380023-1380190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
125-295
               

               
Cow position:
               
chr1:31256199-31256031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
132, 98
               

               
Conread position:
               
126-283
               

               
Cow position:
               
chr1:41953975-41953811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
127-283
               

               
Cow position:
               
chr1:64421570-64421724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
128-283
               

               
Cow position:
               
chr1:42774940-42775094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
85, 123
               

               
Conread position:
               
128-283
               

               
Cow position:
               
chr1:62469091-62469246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
83, 26
               

               
Conread position:
               
129-253
               

               
Cow position:
               
chr1:67539591-67539720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
94, 18
               

               
Conread position:
               
129-283
               

               
Cow position:
               
chr1:60403797-60403957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
129-283
               

               
Cow position:
               
chr1:70416729-70416572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
129-283
               

               
Cow position:
               
chr1:94713134-94712975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
94, 82
               

               
Conread position:
               
129-283
               

               
Cow position:
               
chr1:100800738-100800581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
129-284
               

               
Cow position:
               
chr1:23372890-23373050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
129-290
               

               
Cow position:
               
chr1:32217273-32217433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
130-283
               

               
Cow position:
               
chr1:22828538-22828385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
130-283
               

               
Cow position:
               
chr1:43296687-43296526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
130-283
               

               
Cow position:
               
chr1:87934239-87934092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
130-283
               

               
Cow position:
               
chr1:92187989-92188147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
131-284
               

               
Cow position:
               
chr1:46354406-46354251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
132-271
               

               
Cow position:
               
chr1:3666997-3666852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
133-283
               

               
Cow position:
               
chr1:71664862-71664706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
134-282
               

               
Cow position:
               
chr1:53402817-53402971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
138-244
               

               
Cow position:
               
chr1:3955237-3955131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
138-283
               

               
Cow position:
               
chr1:41022459-41022604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
138-283
               

               
Cow position:
               
chr1:46245700-46245548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
94, 39
               

               
Conread position:
               
138-283
               

               
Cow position:
               
chr1:79178668-79178819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
139-270
               

               
Cow position:
               
chr1:79170112-79169975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
139-282
               

               
Cow position:
               
chr1:66445004-66445143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
139-283
               

               
Cow position:
               
chr1:731932-731782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
81, 140
               

               
Conread position:
               
139-283
               

               
Cow position:
               
chr1:19384415-19384269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
139-283
               

               
Cow position:
               
chr1:22628609-22628468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
139-283
               

               
Cow position:
               
chr1:69442477-69442327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
139-283
               

               
Cow position:
               
chr1:75227279-75227137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
139-283
               

               
Cow position:
               
chr1:90820436-90820292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
88, 13
               

               
Conread position:
               
139-283
               

               
Cow position:
               
chr1:92363622-92363482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
139-283
               

               
Cow position:
               
chr1:96362385-96362250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
139-283
               

               
Cow position:
               
chr1:102423834-102423983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
97, 131
               

               
Conread position:
               
139-288
               

               
Cow position:
               
chr1:22231689-22231844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
139-303
               

               
Cow position:
               
chr1:51968578-51968733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
139-318
               

               
Cow position:
               
chr1:77810718-77810542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
140-234
               

               
Cow position:
               
chr1:37543744-37543650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
95
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
140-278
               

               
Cow position:
               
chr1:46004323-46004457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
140-281
               

               
Cow position:
               
chr1:25955937-25956082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
140-283
               

               
Cow position:
               
chr1:3130507-3130360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
87, 63
               

               
Conread position:
               
140-283
               

               
Cow position:
               
chr1:11489117-11488970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
86, 137
               

               
Conread position:
               
140-283
               

               
Cow position:
               
chr1:26984051-26984200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
140-283
               

               
Cow position:
               
chr1:43379320-43379173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
140-283
               

               
Cow position:
               
chr1:45099802-45099944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
140-283
               

               
Cow position:
               
chr1:53474198-53474336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
140-283
               

               
Cow position:
               
chr1:67674561-67674420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
140-283
               

               
Cow position:
               
chr1:76909711-76909854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
107, 63
               

               
Conread position:
               
140-283
               

               
Cow position:
               
chr1:80385445-80385298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
89, 71
               

               
Conread position:
               
140-283
               

               
Cow position:
               
chr1:83677282-83677137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
84, 61
               

               
Conread position:
               
140-283
               

               
Cow position:
               
chr1:84787312-84787448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
140-283
               

               
Cow position:
               
chr1:90595528-90595389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
140-283
               

               
Cow position:
               
chr1:91743420-91743275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
140-283
               

               
Cow position:
               
chr1:101280696-101280549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
140-288
               

               
Cow position:
               
chr1:7965888-7966040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
141-280
               

               
Cow position:
               
chr1:36018740-36018598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
142-283
               

               
Cow position:
               
chr1:70044397-70044532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
144-284
               

               
Cow position:
               
chr1:52384954-52385101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
145-233
               

               
Cow position:
               
chr1:8353426-8353514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
89
               

               
Alignm identity:
               
77
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
145-270
               

               
Cow position:
               
chr1:45505880-45505759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
145-276
               

               
Cow position:
               
chr1:42796924-42797060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
145-283
               

               
Cow position:
               
chr1:90879689-90879552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
86, 37
               

               
Conread position:
               
145-283
               

               
Cow position:
               
chr1:98380250-98380107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
91, 57
               

               
Conread position:
               
145-283
               

               
Cow position:
               
chr1:100512942-100513085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
83, 47
               

               
Conread position:
               
145-320
               

               
Cow position:
               
chr1:101789046-101788872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
90, 76
               

               
Conread position:
               
146-283
               

               
Cow position:
               
chr1:89146827-89146684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
147-288
               

               
Cow position:
               
chr1:56719389-56719533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
83, 51
               

               
Conread position:
               
148-283
               

               
Cow position:
               
chr1:5010786-5010645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
151-283
               

               
Cow position:
               
chr1:10470479-10470610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
152-283
               

               
Cow position:
               
chr1:15628336-15628467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
152-283
               

               
Cow position:
               
chr1:30028178-30028044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
152-283
               

               
Cow position:
               
chr1:31274936-31274799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
152-283
               

               
Cow position:
               
chr1:31846051-31846186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
84, 35
               

               
Conread position:
               
152-283
               

               
Cow position:
               
chr1:55260182-55260046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
152-283
               

               
Cow position:
               
chr1:74305028-74304891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
152-283
               

               
Cow position:
               
chr1:80423678-80423544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
152-283
               

               
Cow position:
               
chr1:95976387-95976521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
152-298
               

               
Cow position:
               
chr1:1799084-1799235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
153-279
               

               
Cow position:
               
chr1:47190940-47190808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
153-283
               

               
Cow position:
               
chr1:22394620-22394485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
153-283
               

               
Cow position:
               
chr1:36887272-36887142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
153-283
               

               
Cow position:
               
chr1:38055446-38055318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
155-283
               

               
Cow position:
               
chr1:50906623-50906493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
155-283
               

               
Cow position:
               
chr1:73398017-73397883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
158-281
               

               
Cow position:
               
chr1:83246485-83246614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
158-283
               

               
Cow position:
               
chr1:716527-716397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
158-283
               

               
Cow position:
               
chr1:3535130-3535257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
63, 42
               

               
Conread position:
               
158-283
               

               
Cow position:
               
chr1:20202363-20202488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
59, 42
               

               
Conread position:
               
158-283
               

               
Cow position:
               
chr1:65160188-65160318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
63, 21
               

               
Conread position:
               
158-283
               

               
Cow position:
               
chr1:70175478-70175353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
72, 55
               

               
Conread position:
               
158-283
               

               
Cow position:
               
chr1:83222044-83222176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
63, 116
               

               
Conread position:
               
158-290
               

               
Cow position:
               
chr1:67743676-67743543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
160-283
               

               
Cow position:
               
chr1:40212282-40212160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
106, 64
               

               
Conread position:
               
160-283
               

               
Cow position:
               
chr1:71321938-71321815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
162-283
               

               
Cow position:
               
chr1:36625579-36625706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
162-283
               

               
Cow position:
               
chr1:64705963-64706090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
163-283
               

               
Cow position:
               
chr1:8133988-8134113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
72, 40
               

               
Conread position:
               
164-283
               

               
Cow position:
               
chr1:82115922-82115802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
171-283
               

               
Cow position:
               
chr1:34952316-34952426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
175-283
               

               
Cow position:
               
chr1:8778258-8778150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.