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Cow genome map

           
Conread name:
           
Ss1.1-rpigcf0_007062.5
        

               
Conread position:
               
3-231
               

               
Cow position:
               
chr6:5302475-5302254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
42, 8
               

               
Conread position:
               
3-270
               

               
Cow position:
               
chr6:17414507-17414238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
39, 8
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr6:25615163-25614868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
44, 8
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr6:31564398-31564130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
46, 8
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr6:33509731-33510011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
46, 8
               

               
Conread position:
               
3-284
               

               
Cow position:
               
chr6:9219214-9219486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
4-268
               

               
Cow position:
               
chr6:12964795-12965064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
45, 24
               

               
Conread position:
               
4-283
               

               
Cow position:
               
chr6:61515250-61514976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
45, 72
               

               
Conread position:
               
4-298
               

               
Cow position:
               
chr6:67950894-67951193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
44, 23
               

               
Conread position:
               
5-216
               

               
Cow position:
               
chr6:35103390-35103176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
44, 8
               

               
Conread position:
               
5-282
               

               
Cow position:
               
chr6:53932904-53932624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
44, 8
               

               
Conread position:
               
5-283
               

               
Cow position:
               
chr6:62371232-62370965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
46, 56
               

               
Conread position:
               
6-262
               

               
Cow position:
               
chr6:16352404-16352162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
43, 66
               

               
Conread position:
               
6-270
               

               
Cow position:
               
chr6:67069870-67069603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
158, 26
               

               
Conread position:
               
6-283
               

               
Cow position:
               
chr6:1429581-1429856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
19, 70
               

               
Conread position:
               
6-283
               

               
Cow position:
               
chr6:28148195-28148486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
43, 181
               

               
Conread position:
               
7-234
               

               
Cow position:
               
chr6:23466085-23465863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
40, 54
               

               
Conread position:
               
7-241
               

               
Cow position:
               
chr6:68652409-68652172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
7-283
               

               
Cow position:
               
chr6:16765452-16765176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
229, 70
               

               
Conread position:
               
7-283
               

               
Cow position:
               
chr6:66590026-66590294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
257, 73
               

               
Conread position:
               
7-283
               

               
Cow position:
               
chr6:68816110-68816392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
40, 90
               

               
Conread position:
               
8-182
               

               
Cow position:
               
chr6:457124-457293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
8-208
               

               
Cow position:
               
chr6:1886718-1886523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
41, 12
               

               
Conread position:
               
8-208
               

               
Cow position:
               
chr6:4864603-4864403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
40, 76
               

               
Conread position:
               
8-208
               

               
Cow position:
               
chr6:17527643-17527445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
40, 79
               

               
Conread position:
               
8-214
               

               
Cow position:
               
chr6:8788092-8787887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
96, 43
               

               
Conread position:
               
8-214
               

               
Cow position:
               
chr6:36470621-36470412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
42, 84
               

               
Conread position:
               
8-215
               

               
Cow position:
               
chr6:60667365-60667561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
41, 61
               

               
Conread position:
               
8-216
               

               
Cow position:
               
chr6:66874295-66874501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
38, 102
               

               
Conread position:
               
8-217
               

               
Cow position:
               
chr6:11169643-11169855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
41, 121
               

               
Conread position:
               
8-217
               

               
Cow position:
               
chr6:46865644-46865439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
40, 51
               

               
Conread position:
               
8-218
               

               
Cow position:
               
chr6:66131251-66131458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
36, 66
               

               
Conread position:
               
8-219
               

               
Cow position:
               
chr6:42565634-42565842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
41, 78
               

               
Conread position:
               
8-227
               

               
Cow position:
               
chr6:60057708-60057496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
41, 19
               

               
Conread position:
               
8-231
               

               
Cow position:
               
chr6:21234989-21235210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
26, 32
               

               
Conread position:
               
8-233
               

               
Cow position:
               
chr6:16316253-16316485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
52, 28
               

               
Conread position:
               
8-233
               

               
Cow position:
               
chr6:36189643-36189866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
41, 55
               

               
Conread position:
               
8-233
               

               
Cow position:
               
chr6:37199585-37199369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
39, 130
               

               
Conread position:
               
8-234
               

               
Cow position:
               
chr6:16764707-16764476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
39, 16
               

               
Conread position:
               
8-234
               

               
Cow position:
               
chr6:35993531-35993753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
8-235
               

               
Cow position:
               
chr6:18144138-18144368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
41, 28
               

               
Conread position:
               
8-240
               

               
Cow position:
               
chr6:20196349-20196126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
217, 36
               

               
Conread position:
               
8-241
               

               
Cow position:
               
chr6:66531876-66531643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
61, 68
               

               
Conread position:
               
8-246
               

               
Cow position:
               
chr6:48112143-48112381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
48, 43
               

               
Conread position:
               
8-246
               

               
Cow position:
               
chr6:53519678-53519437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
40, 66
               

               
Conread position:
               
8-253
               

               
Cow position:
               
chr6:16191619-16191856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
40, 146
               

               
Conread position:
               
8-256
               

               
Cow position:
               
chr6:54867459-54867712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
8-262
               

               
Cow position:
               
chr6:14949533-14949286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
204, 24
               

               
Conread position:
               
8-262
               

               
Cow position:
               
chr6:21514668-21514405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
31, 56
               

               
Conread position:
               
8-262
               

               
Cow position:
               
chr6:67281842-67282092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
41, 51
               

               
Conread position:
               
8-265
               

               
Cow position:
               
chr6:59104548-59104802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
142, 42
               

               
Conread position:
               
8-268
               

               
Cow position:
               
chr6:37149133-37149392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
38, 70
               

               
Conread position:
               
8-268
               

               
Cow position:
               
chr6:51530241-51529978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
32, 52
               

               
Conread position:
               
8-269
               

               
Cow position:
               
chr6:27888296-27888555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
34, 9
               

               
Conread position:
               
8-270
               

               
Cow position:
               
chr6:8562665-8562927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
42, 80
               

               
Conread position:
               
8-273
               

               
Cow position:
               
chr6:58370699-58370959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
41, 144
               

               
Conread position:
               
8-275
               

               
Cow position:
               
chr6:67187629-67187895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
34, 11
               

               
Conread position:
               
8-277
               

               
Cow position:
               
chr6:38641439-38641710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
41, 130
               

               
Conread position:
               
8-278
               

               
Cow position:
               
chr6:445266-445545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
8-280
               

               
Cow position:
               
chr6:6195166-6194883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
44, 174
               

               
Conread position:
               
8-280
               

               
Cow position:
               
chr6:35842600-35842879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
50, 43
               

               
Conread position:
               
8-280
               

               
Cow position:
               
chr6:52412806-52413081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
38, 53
               

               
Conread position:
               
8-280
               

               
Cow position:
               
chr6:55209504-55209779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
41, 50
               

               
Conread position:
               
8-281
               

               
Cow position:
               
chr6:3952463-3952741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
44, 62
               

               
Conread position:
               
8-281
               

               
Cow position:
               
chr6:4692034-4691745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
41, 177
               

               
Conread position:
               
8-281
               

               
Cow position:
               
chr6:9008666-9008406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
43, 65
               

               
Conread position:
               
8-281
               

               
Cow position:
               
chr6:21061942-21061671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
41, 62
               

               
Conread position:
               
8-281
               

               
Cow position:
               
chr6:45388275-45388541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
41, 53
               

               
Conread position:
               
8-282
               

               
Cow position:
               
chr6:8599950-8600226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
40, 54
               

               
Conread position:
               
8-282
               

               
Cow position:
               
chr6:28482965-28483238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
41, 48
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr6:120187-120459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
19, 53
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr6:5095602-5095320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 272
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr6:6264588-6264874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
41, 17
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr6:7539520-7539795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
27, 54
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr6:7627907-7628191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
34, 68
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr6:10039669-10039948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
34, 17
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr6:10176351-10176077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
38, 68
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr6:11246708-11246990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
41, 122
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr6:12669050-12669320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
41, 17
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr6:13565029-13565308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
34, 123
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr6:14914296-14914012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
41, 100
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr6:15300873-15300618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr6:16700210-16700476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
41, 64
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr6:17313679-17313960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
72, 62
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr6:17997369-17997095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
218, 32
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr6:19045571-19045850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
34, 51
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr6:19755131-19754856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
42, 53
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr6:19996564-19996837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
42, 17
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr6:21004619-21004902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
77, 28
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr6:23402045-23401773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
41, 65
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr6:24536597-24536304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr6:27240061-27239782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
41, 75
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr6:29239885-29240154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
43, 65
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr6:30123246-30122945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
34, 71
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr6:32126009-32126274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
41, 16
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr6:34475606-34475336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
203, 42
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr6:35726041-35726312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
51, 42
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr6:37395463-37395181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr6:38207546-38207264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
72, 90
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr6:38771231-38771493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
41, 73
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr6:40032138-40032401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr6:41375715-41375992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
40, 53
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr6:41733572-41733857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
133, 42
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr6:46557999-46558276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr6:48803691-48803418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
41, 118
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr6:51835343-51835620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
34, 105
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr6:65264593-65264329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
41, 65
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr6:67574348-67574612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
17, 25
               

               
Conread position:
               
8-284
               

               
Cow position:
               
chr6:3595736-3596017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
219, 49
               

               
Conread position:
               
8-284
               

               
Cow position:
               
chr6:5845227-5844945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
8-284
               

               
Cow position:
               
chr6:16261731-16262004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
228, 37
               

               
Conread position:
               
8-284
               

               
Cow position:
               
chr6:20157276-20157558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
8-284
               

               
Cow position:
               
chr6:44867595-44867323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
41, 68
               

               
Conread position:
               
8-284
               

               
Cow position:
               
chr6:54208192-54207909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
8-284
               

               
Cow position:
               
chr6:60739961-60740233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
41, 65
               

               
Conread position:
               
8-284
               

               
Cow position:
               
chr6:62669814-62670094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
41, 24
               

               
Conread position:
               
8-288
               

               
Cow position:
               
chr6:16288107-16287840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
41, 60
               

               
Conread position:
               
8-288
               

               
Cow position:
               
chr6:38441121-38441407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
40, 70
               

               
Conread position:
               
8-290
               

               
Cow position:
               
chr6:19292744-19293027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
85, 32
               

               
Conread position:
               
8-290
               

               
Cow position:
               
chr6:39093681-39093974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
39, 201
               

               
Conread position:
               
8-290
               

               
Cow position:
               
chr6:43345498-43345211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
34, 72
               

               
Conread position:
               
8-290
               

               
Cow position:
               
chr6:60819461-60819744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
42, 53
               

               
Conread position:
               
8-292
               

               
Cow position:
               
chr6:12092048-12091755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
34, 59
               

               
Conread position:
               
8-292
               

               
Cow position:
               
chr6:15937906-15937621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 65
               

               
Conread position:
               
8-298
               

               
Cow position:
               
chr6:15447258-15446957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
40, 294
               

               
Conread position:
               
8-307
               

               
Cow position:
               
chr6:35990288-35989990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
40, 23
               

               
Conread position:
               
8-307
               

               
Cow position:
               
chr6:67618008-67617701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
34, 71
               

               
Conread position:
               
9-232
               

               
Cow position:
               
chr6:3592347-3592565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
38, 16
               

               
Conread position:
               
9-238
               

               
Cow position:
               
chr6:582326-582099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
40, 67
               

               
Conread position:
               
9-270
               

               
Cow position:
               
chr6:6060621-6060362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
206, 41
               

               
Conread position:
               
9-277
               

               
Cow position:
               
chr6:6724449-6724725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
39, 140
               

               
Conread position:
               
9-282
               

               
Cow position:
               
chr6:16746289-16746567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
33, 49
               

               
Conread position:
               
9-283
               

               
Cow position:
               
chr6:8161746-8161463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
41, 52
               

               
Conread position:
               
9-283
               

               
Cow position:
               
chr6:32268930-32268665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
39, 48
               

               
Conread position:
               
9-283
               

               
Cow position:
               
chr6:53841557-53841281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
41, 64
               

               
Conread position:
               
9-283
               

               
Cow position:
               
chr6:60274066-60273788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
25, 49
               

               
Conread position:
               
9-284
               

               
Cow position:
               
chr6:17794813-17794532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
38, 15
               

               
Conread position:
               
9-290
               

               
Cow position:
               
chr6:4468714-4468995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
33, 52
               

               
Conread position:
               
10-191
               

               
Cow position:
               
chr6:61608458-61608639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
37, 48
               

               
Conread position:
               
10-209
               

               
Cow position:
               
chr6:60350348-60350147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
32, 49
               

               
Conread position:
               
10-219
               

               
Cow position:
               
chr6:58597557-58597350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
62, 21
               

               
Conread position:
               
10-226
               

               
Cow position:
               
chr6:6400898-6401112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
39, 48
               

               
Conread position:
               
10-227
               

               
Cow position:
               
chr6:63299085-63298869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
39, 70
               

               
Conread position:
               
10-232
               

               
Cow position:
               
chr6:17549034-17548807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
39, 217
               

               
Conread position:
               
10-234
               

               
Cow position:
               
chr6:47799239-47799463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
36, 66
               

               
Conread position:
               
10-234
               

               
Cow position:
               
chr6:61142617-61142391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
42, 70
               

               
Conread position:
               
10-269
               

               
Cow position:
               
chr6:60468184-60468444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
37, 68
               

               
Conread position:
               
10-270
               

               
Cow position:
               
chr6:26915277-26915537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
37, 63
               

               
Conread position:
               
10-274
               

               
Cow position:
               
chr6:50984173-50984438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
39, 26
               

               
Conread position:
               
10-279
               

               
Cow position:
               
chr6:64431882-64432151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
37, 230
               

               
Conread position:
               
10-281
               

               
Cow position:
               
chr6:9718973-9718697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
40, 103
               

               
Conread position:
               
10-281
               

               
Cow position:
               
chr6:12337935-12338210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
17, 220
               

               
Conread position:
               
10-282
               

               
Cow position:
               
chr6:19264549-19264280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
37, 48
               

               
Conread position:
               
10-283
               

               
Cow position:
               
chr6:143422-143156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
220, 21
               

               
Conread position:
               
10-283
               

               
Cow position:
               
chr6:13687866-13687594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
70, 47
               

               
Conread position:
               
10-283
               

               
Cow position:
               
chr6:29210444-29210699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
10-283
               

               
Cow position:
               
chr6:33206688-33206951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
39, 59
               

               
Conread position:
               
10-283
               

               
Cow position:
               
chr6:35435939-35436209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
38, 69
               

               
Conread position:
               
10-283
               

               
Cow position:
               
chr6:38609916-38610196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
42, 53
               

               
Conread position:
               
10-283
               

               
Cow position:
               
chr6:54490788-54490524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
39, 69
               

               
Conread position:
               
10-283
               

               
Cow position:
               
chr6:59438501-59438239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
36, 49
               

               
Conread position:
               
10-283
               

               
Cow position:
               
chr6:63251974-63251699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
37, 48
               

               
Conread position:
               
10-283
               

               
Cow position:
               
chr6:65870977-65871253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
37, 163
               

               
Conread position:
               
10-284
               

               
Cow position:
               
chr6:18608868-18608587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
39, 51
               

               
Conread position:
               
10-288
               

               
Cow position:
               
chr6:34196203-34195935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
40, 63
               

               
Conread position:
               
10-290
               

               
Cow position:
               
chr6:51581306-51581026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
65, 42
               

               
Conread position:
               
11-202
               

               
Cow position:
               
chr6:54600294-54600486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
31, 50
               

               
Conread position:
               
11-281
               

               
Cow position:
               
chr6:60144251-60143979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
31, 47
               

               
Conread position:
               
11-305
               

               
Cow position:
               
chr6:63720143-63720436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
36, 47
               

               
Conread position:
               
11-325
               

               
Cow position:
               
chr6:56849960-56850279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
37, 286
               

               
Conread position:
               
12-281
               

               
Cow position:
               
chr6:52478465-52478191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
35, 63
               

               
Conread position:
               
12-283
               

               
Cow position:
               
chr6:17557331-17557597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
30, 49
               

               
Conread position:
               
12-283
               

               
Cow position:
               
chr6:48010571-48010302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
204, 38
               

               
Conread position:
               
13-262
               

               
Cow position:
               
chr6:57571428-57571679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
34, 45
               

               
Conread position:
               
13-281
               

               
Cow position:
               
chr6:15242782-15243059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
13-283
               

               
Cow position:
               
chr6:24339233-24339511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
140, 77
               

               
Conread position:
               
14-222
               

               
Cow position:
               
chr6:54991052-54990843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
33, 44
               

               
Conread position:
               
14-265
               

               
Cow position:
               
chr6:61269261-61269515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
33, 187
               

               
Conread position:
               
14-279
               

               
Cow position:
               
chr6:32287589-32287849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
33, 44
               

               
Conread position:
               
14-283
               

               
Cow position:
               
chr6:7128456-7128182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
13, 45
               

               
Conread position:
               
14-283
               

               
Cow position:
               
chr6:8966042-8966310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
33, 47
               

               
Conread position:
               
14-283
               

               
Cow position:
               
chr6:22985907-22985640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
33, 79
               

               
Conread position:
               
14-283
               

               
Cow position:
               
chr6:31535620-31535351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
33, 44
               

               
Conread position:
               
14-283
               

               
Cow position:
               
chr6:60118101-60118364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
35, 43
               

               
Conread position:
               
14-288
               

               
Cow position:
               
chr6:32867260-32866994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
35, 10
               

               
Conread position:
               
14-292
               

               
Cow position:
               
chr6:47574857-47575122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
33, 44
               

               
Conread position:
               
15-205
               

               
Cow position:
               
chr6:48468956-48469141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
16-281
               

               
Cow position:
               
chr6:7119666-7119410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
33, 13
               

               
Conread position:
               
16-318
               

               
Cow position:
               
chr6:2078867-2078561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
33, 42
               

               
Conread position:
               
17-268
               

               
Cow position:
               
chr6:7801439-7801188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
30, 10
               

               
Conread position:
               
18-283
               

               
Cow position:
               
chr6:47958767-47959027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
31, 111
               

               
Conread position:
               
19-270
               

               
Cow position:
               
chr6:40774389-40774125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
29, 137
               

               
Conread position:
               
19-279
               

               
Cow position:
               
chr6:43134982-43134722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
30, 62
               

               
Conread position:
               
19-283
               

               
Cow position:
               
chr6:5609490-5609220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
30, 59
               

               
Conread position:
               
19-283
               

               
Cow position:
               
chr6:38853700-38853434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
6, 40
               

               
Conread position:
               
19-283
               

               
Cow position:
               
chr6:46465779-46466040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
28, 53
               

               
Conread position:
               
19-283
               

               
Cow position:
               
chr6:55417571-55417311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
21, 58
               

               
Conread position:
               
19-283
               

               
Cow position:
               
chr6:62437370-62437639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
221, 31
               

               
Conread position:
               
19-284
               

               
Cow position:
               
chr6:31078916-31078644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
28, 39
               

               
Conread position:
               
19-295
               

               
Cow position:
               
chr6:2584897-2585177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
30, 59
               

               
Conread position:
               
20-217
               

               
Cow position:
               
chr6:19681571-19681372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
26, 38
               

               
Conread position:
               
20-234
               

               
Cow position:
               
chr6:55535792-55535582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
27, 50
               

               
Conread position:
               
20-262
               

               
Cow position:
               
chr6:2153641-2153395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
29, 39
               

               
Conread position:
               
23-271
               

               
Cow position:
               
chr6:66570397-66570638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
27, 35
               

               
Conread position:
               
25-218
               

               
Cow position:
               
chr6:47339395-47339202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
26-217
               

               
Cow position:
               
chr6:28977081-28976887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
21, 32
               

               
Conread position:
               
26-217
               

               
Cow position:
               
chr6:44623570-44623763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
26-277
               

               
Cow position:
               
chr6:8125288-8125545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 35
               

               
Conread position:
               
26-281
               

               
Cow position:
               
chr6:23532620-23532866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
45, 18
               

               
Conread position:
               
26-283
               

               
Cow position:
               
chr6:19446216-19446475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
25, 50
               

               
Conread position:
               
26-290
               

               
Cow position:
               
chr6:611513-611772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
201, 74
               

               
Conread position:
               
27-283
               

               
Cow position:
               
chr6:18118088-18117829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
20, 114
               

               
Conread position:
               
27-283
               

               
Cow position:
               
chr6:21231489-21231734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
15, 49
               

               
Conread position:
               
28-283
               

               
Cow position:
               
chr6:34119390-34119141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
19, 42
               

               
Conread position:
               
31-240
               

               
Cow position:
               
chr6:38218637-38218842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
16, 27
               

               
Conread position:
               
31-283
               

               
Cow position:
               
chr6:3329955-3330218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
19, 42
               

               
Conread position:
               
31-283
               

               
Cow position:
               
chr6:13367251-13367504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
15, 43
               

               
Conread position:
               
31-283
               

               
Cow position:
               
chr6:35181292-35181032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
19, 72
               

               
Conread position:
               
31-283
               

               
Cow position:
               
chr6:37462986-37463227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
17, 188
               

               
Conread position:
               
31-283
               

               
Cow position:
               
chr6:45690635-45690396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
31-283
               

               
Cow position:
               
chr6:56393740-56393995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
19, 45
               

               
Conread position:
               
31-284
               

               
Cow position:
               
chr6:21399790-21399531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
11, 233
               

               
Conread position:
               
32-233
               

               
Cow position:
               
chr6:19131398-19131597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
18, 52
               

               
Conread position:
               
32-283
               

               
Cow position:
               
chr6:5330379-5330636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 166
               

               
Conread position:
               
32-283
               

               
Cow position:
               
chr6:24110249-24110506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
14, 101
               

               
Conread position:
               
32-283
               

               
Cow position:
               
chr6:59603242-59602993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
15, 183
               

               
Conread position:
               
32-288
               

               
Cow position:
               
chr6:6201397-6201660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
10, 30
               

               
Conread position:
               
33-283
               

               
Cow position:
               
chr6:56986675-56986426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
16, 37
               

               
Conread position:
               
34-231
               

               
Cow position:
               
chr6:6343401-6343596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
117, 16
               

               
Conread position:
               
34-290
               

               
Cow position:
               
chr6:66433913-66434183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
15, 120
               

               
Conread position:
               
35-270
               

               
Cow position:
               
chr6:67451401-67451159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
12, 23
               

               
Conread position:
               
36-281
               

               
Cow position:
               
chr6:19695783-19696029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
13, 40
               

               
Conread position:
               
37-283
               

               
Cow position:
               
chr6:62683341-62683597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
30, 169
               

               
Conread position:
               
38-283
               

               
Cow position:
               
chr6:57089171-57089426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
13, 187
               

               
Conread position:
               
38-284
               

               
Cow position:
               
chr6:50504428-50504679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
39-241
               

               
Cow position:
               
chr6:46283032-46282826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
39-244
               

               
Cow position:
               
chr6:55502742-55502948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
29, 37
               

               
Conread position:
               
39-283
               

               
Cow position:
               
chr6:10106005-10105761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
9, 24
               

               
Conread position:
               
39-283
               

               
Cow position:
               
chr6:41015001-41014752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
10, 22
               

               
Conread position:
               
40-270
               

               
Cow position:
               
chr6:22525310-22525535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
40-280
               

               
Cow position:
               
chr6:47778851-47779097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
32, 18
               

               
Conread position:
               
40-283
               

               
Cow position:
               
chr6:28559504-28559762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
81, 39
               

               
Conread position:
               
42-283
               

               
Cow position:
               
chr6:47355799-47356048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
40, 127
               

               
Conread position:
               
44-281
               

               
Cow position:
               
chr6:50862922-50863167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
28, 13
               

               
Conread position:
               
45-231
               

               
Cow position:
               
chr6:59301805-59301623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
31, 55
               

               
Conread position:
               
45-234
               

               
Cow position:
               
chr6:20605937-20606129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
29, 162
               

               
Conread position:
               
45-262
               

               
Cow position:
               
chr6:67323295-67323507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
45-283
               

               
Cow position:
               
chr6:36809225-36808980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
62, 32
               

               
Conread position:
               
45-283
               

               
Cow position:
               
chr6:42567474-42567718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
121, 13
               

               
Conread position:
               
45-292
               

               
Cow position:
               
chr6:32121888-32122126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
176, 146
               

               
Conread position:
               
46-283
               

               
Cow position:
               
chr6:63065808-63066059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
30, 20
               

               
Conread position:
               
48-234
               

               
Cow position:
               
chr6:60451407-60451594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
20, 177
               

               
Conread position:
               
48-243
               

               
Cow position:
               
chr6:53089993-53090184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
189, 155
               

               
Conread position:
               
48-253
               

               
Cow position:
               
chr6:21590691-21590897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
166, 0
               

               
Conread position:
               
48-266
               

               
Cow position:
               
chr6:1103751-1103535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
170, 25
               

               
Conread position:
               
48-266
               

               
Cow position:
               
chr6:61524221-61523999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
183, 0
               

               
Conread position:
               
48-280
               

               
Cow position:
               
chr6:62056598-62056830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
27, 9
               

               
Conread position:
               
48-283
               

               
Cow position:
               
chr6:20219793-20219557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
37, 98
               

               
Conread position:
               
48-283
               

               
Cow position:
               
chr6:46860182-46859948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
34, 9
               

               
Conread position:
               
48-283
               

               
Cow position:
               
chr6:47305324-47305564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
30, 121
               

               
Conread position:
               
48-283
               

               
Cow position:
               
chr6:48097616-48097381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
70, 9
               

               
Conread position:
               
48-297
               

               
Cow position:
               
chr6:694165-693911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
124, 9
               

               
Conread position:
               
49-283
               

               
Cow position:
               
chr6:27219165-27219388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
31, 25
               

               
Conread position:
               
49-283
               

               
Cow position:
               
chr6:32453373-32453611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
167, 26
               

               
Conread position:
               
50-283
               

               
Cow position:
               
chr6:15243242-15243481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
174, 7
               

               
Conread position:
               
50-289
               

               
Cow position:
               
chr6:57287674-57287443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
20, 27
               

               
Conread position:
               
50-290
               

               
Cow position:
               
chr6:48379628-48379382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
15, 30
               

               
Conread position:
               
51-234
               

               
Cow position:
               
chr6:60516815-60516995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
51-283
               

               
Cow position:
               
chr6:35319145-35318911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
169, 9
               

               
Conread position:
               
51-283
               

               
Cow position:
               
chr6:36202807-36203043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
20, 6
               

               
Conread position:
               
51-283
               

               
Cow position:
               
chr6:47520039-47520276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
23, 6
               

               
Conread position:
               
51-290
               

               
Cow position:
               
chr6:21293508-21293269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
74, 9
               

               
Conread position:
               
52-277
               

               
Cow position:
               
chr6:36920986-36920759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
12, 5
               

               
Conread position:
               
52-280
               

               
Cow position:
               
chr6:13653340-13653564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
19, 5
               

               
Conread position:
               
52-283
               

               
Cow position:
               
chr6:53024816-53024589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
20, 5
               

               
Conread position:
               
54-219
               

               
Cow position:
               
chr6:67806027-67805860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
54-283
               

               
Cow position:
               
chr6:53546026-53546251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
55-233
               

               
Cow position:
               
chr6:14063317-14063133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
97, 22
               

               
Conread position:
               
57-283
               

               
Cow position:
               
chr6:6965404-6965173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
157, 60
               

               
Conread position:
               
57-283
               

               
Cow position:
               
chr6:49437326-49437553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
167, 196
               

               
Conread position:
               
59-283
               

               
Cow position:
               
chr6:49421793-49421574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
151, 57
               

               
Conread position:
               
59-283
               

               
Cow position:
               
chr6:55297099-55296870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
168, 17
               

               
Conread position:
               
59-284
               

               
Cow position:
               
chr6:47782854-47783090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
60-232
               

               
Cow position:
               
chr6:37783399-37783568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
60-266
               

               
Cow position:
               
chr6:21467273-21467060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
23, 73
               

               
Conread position:
               
60-270
               

               
Cow position:
               
chr6:38640228-38640443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
22, 11
               

               
Conread position:
               
60-270
               

               
Cow position:
               
chr6:58459718-58459926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
167, 19
               

               
Conread position:
               
60-279
               

               
Cow position:
               
chr6:47245779-47246000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
134, 20
               

               
Conread position:
               
60-281
               

               
Cow position:
               
chr6:46173264-46173038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
20, 45
               

               
Conread position:
               
60-283
               

               
Cow position:
               
chr6:21475721-21475947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
17, 142
               

               
Conread position:
               
60-283
               

               
Cow position:
               
chr6:42034768-42034992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
170, 134
               

               
Conread position:
               
60-283
               

               
Cow position:
               
chr6:47540852-47540618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
63, 17
               

               
Conread position:
               
60-283
               

               
Cow position:
               
chr6:57546226-57546007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
20, 63
               

               
Conread position:
               
61-283
               

               
Cow position:
               
chr6:39358348-39358121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
56, 165
               

               
Conread position:
               
62-234
               

               
Cow position:
               
chr6:1002263-1002093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
62-268
               

               
Cow position:
               
chr6:23696000-23696206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
159, 15
               

               
Conread position:
               
62-280
               

               
Cow position:
               
chr6:53145682-53145461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
174, 10
               

               
Conread position:
               
62-283
               

               
Cow position:
               
chr6:3351026-3351250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
62-283
               

               
Cow position:
               
chr6:5820248-5820038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
62-283
               

               
Cow position:
               
chr6:8688852-8688628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
13, 37
               

               
Conread position:
               
62-283
               

               
Cow position:
               
chr6:61681074-61681300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
62-286
               

               
Cow position:
               
chr6:10466092-10466314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
45, 15
               

               
Conread position:
               
62-286
               

               
Cow position:
               
chr6:17704830-17705058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
161, 15
               

               
Conread position:
               
63-293
               

               
Cow position:
               
chr6:54846278-54846044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
44, 15
               

               
Conread position:
               
64-270
               

               
Cow position:
               
chr6:67643692-67643480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
64-283
               

               
Cow position:
               
chr6:1475345-1475559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
157, 0
               

               
Conread position:
               
64-283
               

               
Cow position:
               
chr6:24031381-24031585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
64-283
               

               
Cow position:
               
chr6:37827954-37827725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
17, 96
               

               
Conread position:
               
64-283
               

               
Cow position:
               
chr6:53460568-53460349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
16, 160
               

               
Conread position:
               
65-283
               

               
Cow position:
               
chr6:55548533-55548312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
158, 187
               

               
Conread position:
               
66-262
               

               
Cow position:
               
chr6:6067698-6067503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
130, 6
               

               
Conread position:
               
66-280
               

               
Cow position:
               
chr6:22850253-22850033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
19, 10
               

               
Conread position:
               
66-283
               

               
Cow position:
               
chr6:61109789-61110004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
67-276
               

               
Cow position:
               
chr6:55282290-55282075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
101, 12
               

               
Conread position:
               
67-283
               

               
Cow position:
               
chr6:4383483-4383696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
166, 39
               

               
Conread position:
               
67-283
               

               
Cow position:
               
chr6:18447513-18447293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
156, 59
               

               
Conread position:
               
67-283
               

               
Cow position:
               
chr6:58725372-58725589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
18, 86
               

               
Conread position:
               
67-295
               

               
Cow position:
               
chr6:15305572-15305805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
10, 73
               

               
Conread position:
               
68-283
               

               
Cow position:
               
chr6:6229705-6229908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
68-283
               

               
Cow position:
               
chr6:54831478-54831700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
14, 140
               

               
Conread position:
               
69-233
               

               
Cow position:
               
chr6:67456723-67456887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
69-267
               

               
Cow position:
               
chr6:17816991-17816785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
69-280
               

               
Cow position:
               
chr6:16380549-16380767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
12, 6
               

               
Conread position:
               
69-283
               

               
Cow position:
               
chr6:8731413-8731641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
56, 116
               

               
Conread position:
               
69-283
               

               
Cow position:
               
chr6:50090647-50090867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
167, 0
               

               
Conread position:
               
71-270
               

               
Cow position:
               
chr6:44636491-44636302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
35, 12
               

               
Conread position:
               
72-262
               

               
Cow position:
               
chr6:58304422-58304617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
153, 0
               

               
Conread position:
               
72-283
               

               
Cow position:
               
chr6:9302710-9302501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
5, 67
               

               
Conread position:
               
72-283
               

               
Cow position:
               
chr6:29485089-29485305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
72-283
               

               
Cow position:
               
chr6:48435844-48436052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
151, 5
               

               
Conread position:
               
72-283
               

               
Cow position:
               
chr6:60850709-60850921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
165, 19
               

               
Conread position:
               
73-283
               

               
Cow position:
               
chr6:30023895-30024099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
73-283
               

               
Cow position:
               
chr6:57079432-57079648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
150, 0
               

               
Conread position:
               
74-283
               

               
Cow position:
               
chr6:21470419-21470210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
74-283
               

               
Cow position:
               
chr6:66839208-66839415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
153, 40
               

               
Conread position:
               
76-283
               

               
Cow position:
               
chr6:8369438-8369646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
150, 9
               

               
Conread position:
               
76-297
               

               
Cow position:
               
chr6:12761293-12761514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
148, 9
               

               
Conread position:
               
76-318
               

               
Cow position:
               
chr6:42483427-42483670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
151, 58
               

               
Conread position:
               
77-281
               

               
Cow position:
               
chr6:33450957-33450757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
147, 59
               

               
Conread position:
               
77-283
               

               
Cow position:
               
chr6:1941819-1941612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
79, 63
               

               
Conread position:
               
77-283
               

               
Cow position:
               
chr6:19401857-19402067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
56, 100
               

               
Conread position:
               
77-283
               

               
Cow position:
               
chr6:21587417-21587212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
77-283
               

               
Cow position:
               
chr6:37692764-37692971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
32, 40
               

               
Conread position:
               
77-283
               

               
Cow position:
               
chr6:49398606-49398407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
77-284
               

               
Cow position:
               
chr6:1871185-1870974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
77-292
               

               
Cow position:
               
chr6:23110187-23109960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
78-266
               

               
Cow position:
               
chr6:31865112-31865300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
145, 33
               

               
Conread position:
               
78-281
               

               
Cow position:
               
chr6:24468381-24468179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
18, 13
               

               
Conread position:
               
78-283
               

               
Cow position:
               
chr6:65535157-65534946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
78-302
               

               
Cow position:
               
chr6:54127799-54127582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
78-327
               

               
Cow position:
               
chr6:44194535-44194292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
79-267
               

               
Cow position:
               
chr6:69153428-69153618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
146, 31
               

               
Conread position:
               
79-281
               

               
Cow position:
               
chr6:21535052-21535260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
79-321
               

               
Cow position:
               
chr6:12623530-12623767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
27, 18
               

               
Conread position:
               
80-283
               

               
Cow position:
               
chr6:1866748-1866953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
177, 23
               

               
Conread position:
               
81-283
               

               
Cow position:
               
chr6:26155165-26155369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
82-260
               

               
Cow position:
               
chr6:2547273-2547454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
82-283
               

               
Cow position:
               
chr6:18080497-18080294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
153, 57
               

               
Conread position:
               
82-284
               

               
Cow position:
               
chr6:47648218-47648011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
145, 107
               

               
Conread position:
               
83-279
               

               
Cow position:
               
chr6:50771340-50771142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
138, 45
               

               
Conread position:
               
83-283
               

               
Cow position:
               
chr6:28089029-28088825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
140, 114
               

               
Conread position:
               
86-283
               

               
Cow position:
               
chr6:62078945-62079140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
139, 14
               

               
Conread position:
               
87-281
               

               
Cow position:
               
chr6:33150269-33150074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
148, 95
               

               
Conread position:
               
88-283
               

               
Cow position:
               
chr6:16090927-16091119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
89-283
               

               
Cow position:
               
chr6:66259754-66259959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
91-283
               

               
Cow position:
               
chr6:8365838-8366036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
91-283
               

               
Cow position:
               
chr6:42728672-42728868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
132, 102
               

               
Conread position:
               
91-283
               

               
Cow position:
               
chr6:50883651-50883456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
92-283
               

               
Cow position:
               
chr6:51933582-51933761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
95-233
               

               
Cow position:
               
chr6:5461745-5461610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
123, 43
               

               
Conread position:
               
96-283
               

               
Cow position:
               
chr6:22876899-22876706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
101-233
               

               
Cow position:
               
chr6:35702309-35702176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
102-283
               

               
Cow position:
               
chr6:34722068-34721889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
14, 70
               

               
Conread position:
               
103-234
               

               
Cow position:
               
chr6:19508149-19508018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
103-283
               

               
Cow position:
               
chr6:45921175-45920998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
104-283
               

               
Cow position:
               
chr6:8468705-8468881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
105-284
               

               
Cow position:
               
chr6:55044601-55044418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
118, 90
               

               
Conread position:
               
106-270
               

               
Cow position:
               
chr6:24491070-24491243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
106-281
               

               
Cow position:
               
chr6:53711444-53711623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
106-283
               

               
Cow position:
               
chr6:15587553-15587370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
106-283
               

               
Cow position:
               
chr6:24776180-24776360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
113, 175
               

               
Conread position:
               
106-283
               

               
Cow position:
               
chr6:62724597-62724780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
106-288
               

               
Cow position:
               
chr6:15058418-15058602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
106-326
               

               
Cow position:
               
chr6:34380773-34380551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
119, 65
               

               
Conread position:
               
107-283
               

               
Cow position:
               
chr6:19563441-19563257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
107-284
               

               
Cow position:
               
chr6:36225151-36225333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
109-288
               

               
Cow position:
               
chr6:21083496-21083314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
110-233
               

               
Cow position:
               
chr6:28900372-28900493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
110-283
               

               
Cow position:
               
chr6:3936830-3937009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
113, 21
               

               
Conread position:
               
110-284
               

               
Cow position:
               
chr6:36537315-36537140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
112-283
               

               
Cow position:
               
chr6:8187142-8186965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
112-283
               

               
Cow position:
               
chr6:44544098-44543925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
113, 9
               

               
Conread position:
               
112-283
               

               
Cow position:
               
chr6:66978917-66979093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
112, 26
               

               
Conread position:
               
112-308
               

               
Cow position:
               
chr6:25773168-25772973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
109, 26
               

               
Conread position:
               
113-280
               

               
Cow position:
               
chr6:57072471-57072643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
113, 76
               

               
Conread position:
               
114-283
               

               
Cow position:
               
chr6:45160008-45159833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
114-284
               

               
Cow position:
               
chr6:26054855-26054677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
115-283
               

               
Cow position:
               
chr6:53346025-53346188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
119-281
               

               
Cow position:
               
chr6:60186608-60186434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
120-281
               

               
Cow position:
               
chr6:57467652-57467819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
122-283
               

               
Cow position:
               
chr6:26408447-26408280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
122-288
               

               
Cow position:
               
chr6:63012386-63012557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
102, 78
               

               
Conread position:
               
123-284
               

               
Cow position:
               
chr6:54820890-54821057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
124-234
               

               
Cow position:
               
chr6:38234292-38234402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
80, 23
               

               
Conread position:
               
124-283
               

               
Cow position:
               
chr6:21052390-21052224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
124-283
               

               
Cow position:
               
chr6:21184163-21184001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
100, 50
               

               
Conread position:
               
124-283
               

               
Cow position:
               
chr6:28562109-28561946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
100, 74
               

               
Conread position:
               
124-283
               

               
Cow position:
               
chr6:33302454-33302618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
124-283
               

               
Cow position:
               
chr6:35985077-35984912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
124-297
               

               
Cow position:
               
chr6:30983579-30983749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
95, 68
               

               
Conread position:
               
124-307
               

               
Cow position:
               
chr6:61644799-61644610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
125-268
               

               
Cow position:
               
chr6:35342121-35341975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
15, 74
               

               
Conread position:
               
125-283
               

               
Cow position:
               
chr6:34423398-34423238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
128-290
               

               
Cow position:
               
chr6:29851432-29851597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
128-300
               

               
Cow position:
               
chr6:58173413-58173580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
129-283
               

               
Cow position:
               
chr6:14263826-14263667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
22, 47
               

               
Conread position:
               
129-283
               

               
Cow position:
               
chr6:14471427-14471587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
129-283
               

               
Cow position:
               
chr6:47022625-47022781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
129-283
               

               
Cow position:
               
chr6:49685883-49686042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
94, 11
               

               
Conread position:
               
129-283
               

               
Cow position:
               
chr6:50577585-50577737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
87, 142
               

               
Conread position:
               
129-283
               

               
Cow position:
               
chr6:53811647-53811808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
129-283
               

               
Cow position:
               
chr6:66293549-66293705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
94, 139
               

               
Conread position:
               
129-284
               

               
Cow position:
               
chr6:58697567-58697406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
129-289
               

               
Cow position:
               
chr6:18440413-18440250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
90, 147
               

               
Conread position:
               
130-281
               

               
Cow position:
               
chr6:34076227-34076383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
130-283
               

               
Cow position:
               
chr6:32006389-32006234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
132-281
               

               
Cow position:
               
chr6:40682599-40682448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
133-283
               

               
Cow position:
               
chr6:44540876-44541026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
82, 101
               

               
Conread position:
               
134-281
               

               
Cow position:
               
chr6:15974454-15974303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
134-283
               

               
Cow position:
               
chr6:63182358-63182507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
135-283
               

               
Cow position:
               
chr6:8726747-8726899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
136-283
               

               
Cow position:
               
chr6:2014200-2014347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
94, 39
               

               
Conread position:
               
136-283
               

               
Cow position:
               
chr6:29496064-29496214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
87, 137
               

               
Conread position:
               
138-270
               

               
Cow position:
               
chr6:62224495-62224633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
76, 117
               

               
Conread position:
               
138-280
               

               
Cow position:
               
chr6:66947748-66947604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
138-297
               

               
Cow position:
               
chr6:16411684-16411847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
85, 158
               

               
Conread position:
               
139-255
               

               
Cow position:
               
chr6:58076468-58076590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
139-270
               

               
Cow position:
               
chr6:18152467-18152600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
139-270
               

               
Cow position:
               
chr6:30895917-30895781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
139-275
               

               
Cow position:
               
chr6:5600786-5600656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
139-283
               

               
Cow position:
               
chr6:4323404-4323544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
139-283
               

               
Cow position:
               
chr6:4760066-4760215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
139-283
               

               
Cow position:
               
chr6:7291390-7291533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
139-283
               

               
Cow position:
               
chr6:43906609-43906459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
139-283
               

               
Cow position:
               
chr6:47989502-47989648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
108, 10
               

               
Conread position:
               
140-281
               

               
Cow position:
               
chr6:30825693-30825556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
140-283
               

               
Cow position:
               
chr6:16137695-16137545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
140-283
               

               
Cow position:
               
chr6:24903502-24903353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
140-283
               

               
Cow position:
               
chr6:34463512-34463369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
140-284
               

               
Cow position:
               
chr6:60347551-60347402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
87, 12
               

               
Conread position:
               
140-288
               

               
Cow position:
               
chr6:19936494-19936341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
83, 55
               

               
Conread position:
               
141-281
               

               
Cow position:
               
chr6:48278812-48278675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
141-283
               

               
Cow position:
               
chr6:2757861-2758004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
142-283
               

               
Cow position:
               
chr6:54840430-54840278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
145-283
               

               
Cow position:
               
chr6:16627815-16627951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
145-283
               

               
Cow position:
               
chr6:19225303-19225170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
145-283
               

               
Cow position:
               
chr6:39414903-39415047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
12, 70
               

               
Conread position:
               
145-284
               

               
Cow position:
               
chr6:6547427-6547291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
145-290
               

               
Cow position:
               
chr6:21175418-21175563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
145-411
               

               
Cow position:
               
chr6:54406719-54406455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
76, 131
               

               
Conread position:
               
147-283
               

               
Cow position:
               
chr6:14152808-14152669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
93, 129
               

               
Conread position:
               
147-283
               

               
Cow position:
               
chr6:62805725-62805867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
147-292
               

               
Cow position:
               
chr6:47450839-47450688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
148-283
               

               
Cow position:
               
chr6:21347067-21346931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
148-283
               

               
Cow position:
               
chr6:66058624-66058487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
149-284
               

               
Cow position:
               
chr6:67374592-67374454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
152-278
               

               
Cow position:
               
chr6:53235565-53235436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
152-283
               

               
Cow position:
               
chr6:12099599-12099468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
152-283
               

               
Cow position:
               
chr6:31928724-31928861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
152-283
               

               
Cow position:
               
chr6:40833927-40833798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
152-284
               

               
Cow position:
               
chr6:12928230-12928363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
152-284
               

               
Cow position:
               
chr6:53732069-53732208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
153-280
               

               
Cow position:
               
chr6:5445755-5445887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
77, 60
               

               
Conread position:
               
153-281
               

               
Cow position:
               
chr6:57935484-57935356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
68, 16
               

               
Conread position:
               
153-283
               

               
Cow position:
               
chr6:54828234-54828098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
154-283
               

               
Cow position:
               
chr6:16016123-16016257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
66, 49
               

               
Conread position:
               
155-227
               

               
Cow position:
               
chr6:13327084-13327012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
73
               

               
Alignm identity:
               
68
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
155-283
               

               
Cow position:
               
chr6:47150910-47151040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
155-283
               

               
Cow position:
               
chr6:66302515-66302385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
158-283
               

               
Cow position:
               
chr6:6117551-6117426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
159-283
               

               
Cow position:
               
chr6:23381574-23381444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
159-283
               

               
Cow position:
               
chr6:31847146-31847022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
160-283
               

               
Cow position:
               
chr6:61884079-61883951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
59, 34
               

               
Conread position:
               
161-284
               

               
Cow position:
               
chr6:43770802-43770679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
65, 58
               

               
Conread position:
               
163-284
               

               
Cow position:
               
chr6:68602342-68602465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
164-284
               

               
Cow position:
               
chr6:62849025-62849144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
66, 45
               

               
Conread position:
               
166-281
               

               
Cow position:
               
chr6:62539501-62539388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
171-290
               

               
Cow position:
               
chr6:67810878-67810759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.