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Cow genome map

           
Conread name:
           
Ss1.1-rpigcf0_007632.5
        

               
Conread position:
               
106-293
               

               
Cow position:
               
chr6:61130627-61130444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
81, 13
               

               
Conread position:
               
106-308
               

               
Cow position:
               
chr6:633506-633309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
76, 13
               

               
Conread position:
               
113-419
               

               
Cow position:
               
chr6:58597646-58597350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
158, 10
               

               
Conread position:
               
119-499
               

               
Cow position:
               
chr6:2547107-2547501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
154, 103
               

               
Conread position:
               
119-499
               

               
Cow position:
               
chr6:32125930-32126292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 39
               

               
Conread position:
               
125-516
               

               
Cow position:
               
chr6:33206613-33206985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
30, 57
               

               
Conread position:
               
127-333
               

               
Cow position:
               
chr6:49694248-49694452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
63, 31
               

               
Conread position:
               
127-495
               

               
Cow position:
               
chr6:67950823-67951193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 6
               

               
Conread position:
               
127-499
               

               
Cow position:
               
chr6:56376481-56376131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
78, 11
               

               
Conread position:
               
128-489
               

               
Cow position:
               
chr6:4559435-4559073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
54, 123
               

               
Conread position:
               
131-363
               

               
Cow position:
               
chr6:48169819-48170037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
23, 43
               

               
Conread position:
               
133-495
               

               
Cow position:
               
chr6:38771163-38771507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
137-466
               

               
Cow position:
               
chr6:40774473-40774127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
75, 212
               

               
Conread position:
               
137-502
               

               
Cow position:
               
chr6:65870906-65871276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 203
               

               
Conread position:
               
138-489
               

               
Cow position:
               
chr6:54854129-54854480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
44, 71
               

               
Conread position:
               
140-389
               

               
Cow position:
               
chr6:10695753-10695985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
140-484
               

               
Cow position:
               
chr6:12092104-12091761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
267, 17
               

               
Conread position:
               
141-249
               

               
Cow position:
               
chr6:1475073-1475180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
141-259
               

               
Cow position:
               
chr6:62017415-62017535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
141-269
               

               
Cow position:
               
chr6:389053-389185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
96, 113
               

               
Conread position:
               
141-269
               

               
Cow position:
               
chr6:50509561-50509683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
46, 80
               

               
Conread position:
               
141-273
               

               
Cow position:
               
chr6:30786271-30786141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
141-277
               

               
Cow position:
               
chr6:33276924-33277060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
44, 111
               

               
Conread position:
               
141-285
               

               
Cow position:
               
chr6:66453683-66453827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
114, 92
               

               
Conread position:
               
141-286
               

               
Cow position:
               
chr6:8318281-8318136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
63, 110
               

               
Conread position:
               
141-290
               

               
Cow position:
               
chr6:47625080-47624931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
64, 105
               

               
Conread position:
               
141-292
               

               
Cow position:
               
chr6:19351271-19351123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
141-297
               

               
Cow position:
               
chr6:13741578-13741738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
40, 117
               

               
Conread position:
               
141-299
               

               
Cow position:
               
chr6:358007-357847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
45, 111
               

               
Conread position:
               
141-299
               

               
Cow position:
               
chr6:602976-603135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
56, 15
               

               
Conread position:
               
141-299
               

               
Cow position:
               
chr6:18968896-18968741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
141-299
               

               
Cow position:
               
chr6:24515310-24515159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
141-299
               

               
Cow position:
               
chr6:47540414-47540571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
40, 69
               

               
Conread position:
               
141-299
               

               
Cow position:
               
chr6:58076107-58076269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
35, 101
               

               
Conread position:
               
141-300
               

               
Cow position:
               
chr6:54287955-54288112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
44, 114
               

               
Conread position:
               
141-306
               

               
Cow position:
               
chr6:29266088-29266250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
49, 12
               

               
Conread position:
               
141-306
               

               
Cow position:
               
chr6:34031546-34031707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
141-306
               

               
Cow position:
               
chr6:49604564-49604722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
141-307
               

               
Cow position:
               
chr6:5958136-5957981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
141-307
               

               
Cow position:
               
chr6:8187632-8187473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
49, 24
               

               
Conread position:
               
141-307
               

               
Cow position:
               
chr6:25773500-25773338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
45, 65
               

               
Conread position:
               
141-307
               

               
Cow position:
               
chr6:32335685-32335848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
43, 12
               

               
Conread position:
               
141-307
               

               
Cow position:
               
chr6:33150523-33150361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
141-307
               

               
Cow position:
               
chr6:40834586-40834421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
141-307
               

               
Cow position:
               
chr6:44756925-44757080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
141-307
               

               
Cow position:
               
chr6:46205893-46206060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
35, 120
               

               
Conread position:
               
141-307
               

               
Cow position:
               
chr6:48344215-48344380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
146, 109
               

               
Conread position:
               
141-307
               

               
Cow position:
               
chr6:53731404-53731571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
45, 115
               

               
Conread position:
               
141-307
               

               
Cow position:
               
chr6:62479279-62479113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
46, 12
               

               
Conread position:
               
141-307
               

               
Cow position:
               
chr6:67304688-67304852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
132, 55
               

               
Conread position:
               
141-308
               

               
Cow position:
               
chr6:12629907-12630069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
45, 108
               

               
Conread position:
               
141-313
               

               
Cow position:
               
chr6:642690-642513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
57, 113
               

               
Conread position:
               
141-319
               

               
Cow position:
               
chr6:61137258-61137434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
141-322
               

               
Cow position:
               
chr6:32210745-32210571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
141-326
               

               
Cow position:
               
chr6:5673116-5673313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
33, 123
               

               
Conread position:
               
141-326
               

               
Cow position:
               
chr6:44984212-44984396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
41, 115
               

               
Conread position:
               
141-327
               

               
Cow position:
               
chr6:11637869-11637689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
38, 68
               

               
Conread position:
               
141-327
               

               
Cow position:
               
chr6:34075901-34076096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
38, 118
               

               
Conread position:
               
141-327
               

               
Cow position:
               
chr6:36928538-36928728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
141-327
               

               
Cow position:
               
chr6:38233843-38234026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
141-327
               

               
Cow position:
               
chr6:49685468-49685649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
141-327
               

               
Cow position:
               
chr6:60239506-60239328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
38, 95
               

               
Conread position:
               
141-328
               

               
Cow position:
               
chr6:1510471-1510664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
124, 109
               

               
Conread position:
               
141-328
               

               
Cow position:
               
chr6:3545578-3545763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
111, 58
               

               
Conread position:
               
141-328
               

               
Cow position:
               
chr6:9839045-9839240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
49, 116
               

               
Conread position:
               
141-330
               

               
Cow position:
               
chr6:14850831-14850644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
48, 15
               

               
Conread position:
               
141-330
               

               
Cow position:
               
chr6:18961633-18961445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
141-330
               

               
Cow position:
               
chr6:50445880-50445698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
27, 112
               

               
Conread position:
               
141-331
               

               
Cow position:
               
chr6:44098967-44099158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
34, 133
               

               
Conread position:
               
141-331
               

               
Cow position:
               
chr6:48425442-48425253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
49, 113
               

               
Conread position:
               
141-333
               

               
Cow position:
               
chr6:47989071-47989246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
188, 32
               

               
Conread position:
               
141-335
               

               
Cow position:
               
chr6:22968964-22969158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
64, 94
               

               
Conread position:
               
141-342
               

               
Cow position:
               
chr6:5445508-5445705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
45, 78
               

               
Conread position:
               
141-344
               

               
Cow position:
               
chr6:59296882-59297082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
47, 64
               

               
Conread position:
               
141-346
               

               
Cow position:
               
chr6:607149-607345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
45, 66
               

               
Conread position:
               
141-353
               

               
Cow position:
               
chr6:12829339-12829136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
141-353
               

               
Cow position:
               
chr6:26173022-26172814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
141-357
               

               
Cow position:
               
chr6:24962032-24962238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
196, 65
               

               
Conread position:
               
141-362
               

               
Cow position:
               
chr6:59108824-59109043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
37, 118
               

               
Conread position:
               
141-373
               

               
Cow position:
               
chr6:22503036-22502802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
21, 119
               

               
Conread position:
               
141-373
               

               
Cow position:
               
chr6:54140691-54140906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
42, 74
               

               
Conread position:
               
141-380
               

               
Cow position:
               
chr6:130278-130047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
127, 82
               

               
Conread position:
               
141-387
               

               
Cow position:
               
chr6:57164309-57164552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
49, 192
               

               
Conread position:
               
141-389
               

               
Cow position:
               
chr6:12543050-12542805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 108
               

               
Conread position:
               
141-389
               

               
Cow position:
               
chr6:55763737-55763978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
49, 18
               

               
Conread position:
               
141-391
               

               
Cow position:
               
chr6:23248076-23247839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
113, 67
               

               
Conread position:
               
141-391
               

               
Cow position:
               
chr6:52248248-52248003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
92, 116
               

               
Conread position:
               
141-391
               

               
Cow position:
               
chr6:54369017-54368777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
47, 97
               

               
Conread position:
               
141-391
               

               
Cow position:
               
chr6:61608394-61608639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
141-392
               

               
Cow position:
               
chr6:25008597-25008846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
105, 29
               

               
Conread position:
               
141-392
               

               
Cow position:
               
chr6:31635806-31635556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
131, 40
               

               
Conread position:
               
141-396
               

               
Cow position:
               
chr6:53401247-53401487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
126, 40
               

               
Conread position:
               
141-397
               

               
Cow position:
               
chr6:20206159-20206408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
38, 110
               

               
Conread position:
               
141-398
               

               
Cow position:
               
chr6:27110476-27110731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
46, 148
               

               
Conread position:
               
141-403
               

               
Cow position:
               
chr6:12845262-12845514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
49, 133
               

               
Conread position:
               
141-403
               

               
Cow position:
               
chr6:38614704-38614951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
129, 15
               

               
Conread position:
               
141-404
               

               
Cow position:
               
chr6:27815586-27815331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
134, 16
               

               
Conread position:
               
141-404
               

               
Cow position:
               
chr6:56843039-56843293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
114, 49
               

               
Conread position:
               
141-405
               

               
Cow position:
               
chr6:47640550-47640291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
141-408
               

               
Cow position:
               
chr6:12551153-12551413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
120, 62
               

               
Conread position:
               
141-408
               

               
Cow position:
               
chr6:14958462-14958196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 191
               

               
Conread position:
               
141-408
               

               
Cow position:
               
chr6:16423586-16423845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
125, 17
               

               
Conread position:
               
141-408
               

               
Cow position:
               
chr6:31525935-31526190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
129, 30
               

               
Conread position:
               
141-408
               

               
Cow position:
               
chr6:58073931-58074191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
132, 99
               

               
Conread position:
               
141-408
               

               
Cow position:
               
chr6:60350412-60350148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
103, 115
               

               
Conread position:
               
141-411
               

               
Cow position:
               
chr6:67968727-67968465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
118, 60
               

               
Conread position:
               
141-413
               

               
Cow position:
               
chr6:1499525-1499789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
93, 15
               

               
Conread position:
               
141-416
               

               
Cow position:
               
chr6:66874234-66874501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 29
               

               
Conread position:
               
141-417
               

               
Cow position:
               
chr6:16706889-16707165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
38, 12
               

               
Conread position:
               
141-417
               

               
Cow position:
               
chr6:19427336-19427603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
64, 110
               

               
Conread position:
               
141-419
               

               
Cow position:
               
chr6:38218555-38218821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
141-419
               

               
Cow position:
               
chr6:60442301-60442562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
41, 23
               

               
Conread position:
               
141-419
               

               
Cow position:
               
chr6:67456596-67456873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
51, 124
               

               
Conread position:
               
141-420
               

               
Cow position:
               
chr6:19681640-19681369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
37, 77
               

               
Conread position:
               
141-420
               

               
Cow position:
               
chr6:42565572-42565843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 19
               

               
Conread position:
               
141-420
               

               
Cow position:
               
chr6:46865710-46865436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
49, 116
               

               
Conread position:
               
141-423
               

               
Cow position:
               
chr6:1886781-1886507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
45, 69
               

               
Conread position:
               
141-423
               

               
Cow position:
               
chr6:6343309-6343588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 108
               

               
Conread position:
               
141-423
               

               
Cow position:
               
chr6:47339469-47339197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
141-424
               

               
Cow position:
               
chr6:46283117-46282844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
109, 74
               

               
Conread position:
               
141-425
               

               
Cow position:
               
chr6:5302525-5302260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
141-425
               

               
Cow position:
               
chr6:7989529-7989255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
42, 94
               

               
Conread position:
               
141-425
               

               
Cow position:
               
chr6:21234927-21235204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
141-425
               

               
Cow position:
               
chr6:37783301-37783561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
44, 81
               

               
Conread position:
               
141-425
               

               
Cow position:
               
chr6:47799174-47799454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 117
               

               
Conread position:
               
141-425
               

               
Cow position:
               
chr6:59069741-59069459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 81
               

               
Conread position:
               
141-426
               

               
Cow position:
               
chr6:42961480-42961201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
41, 85
               

               
Conread position:
               
141-426
               

               
Cow position:
               
chr6:54573126-54573422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 205
               

               
Conread position:
               
141-426
               

               
Cow position:
               
chr6:54867399-54867679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 12
               

               
Conread position:
               
141-428
               

               
Cow position:
               
chr6:16316193-16316480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
48, 14
               

               
Conread position:
               
141-428
               

               
Cow position:
               
chr6:25407509-25407228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
46, 111
               

               
Conread position:
               
141-430
               

               
Cow position:
               
chr6:60057773-60057493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
40, 75
               

               
Conread position:
               
141-430
               

               
Cow position:
               
chr6:66131186-66131470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
40, 118
               

               
Conread position:
               
141-431
               

               
Cow position:
               
chr6:4692097-4691809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
48, 108
               

               
Conread position:
               
141-431
               

               
Cow position:
               
chr6:18049147-18048853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
40, 115
               

               
Conread position:
               
141-432
               

               
Cow position:
               
chr6:415981-416293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
141-432
               

               
Cow position:
               
chr6:35993464-35993751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 96
               

               
Conread position:
               
141-432
               

               
Cow position:
               
chr6:51674797-51675074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
141-432
               

               
Cow position:
               
chr6:54864788-54864492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
44, 110
               

               
Conread position:
               
141-432
               

               
Cow position:
               
chr6:67214627-67214917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 194
               

               
Conread position:
               
141-436
               

               
Cow position:
               
chr6:6400836-6401122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
129, 25
               

               
Conread position:
               
141-438
               

               
Cow position:
               
chr6:9452886-9452596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
129, 85
               

               
Conread position:
               
141-445
               

               
Cow position:
               
chr6:48112085-48112382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
268, 12
               

               
Conread position:
               
141-452
               

               
Cow position:
               
chr6:528390-528098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
293, 46
               

               
Conread position:
               
141-455
               

               
Cow position:
               
chr6:40713615-40713313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
48, 9
               

               
Conread position:
               
141-458
               

               
Cow position:
               
chr6:20098081-20097765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
114, 194
               

               
Conread position:
               
141-460
               

               
Cow position:
               
chr6:8637158-8637478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
39, 33
               

               
Conread position:
               
141-461
               

               
Cow position:
               
chr6:57571360-57571680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
63, 115
               

               
Conread position:
               
141-461
               

               
Cow position:
               
chr6:67323199-67323508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
40, 76
               

               
Conread position:
               
141-462
               

               
Cow position:
               
chr6:36189580-36189903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
43, 108
               

               
Conread position:
               
141-463
               

               
Cow position:
               
chr6:59104491-59104802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
261, 33
               

               
Conread position:
               
141-469
               

               
Cow position:
               
chr6:26915212-26915538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
22, 116
               

               
Conread position:
               
141-476
               

               
Cow position:
               
chr6:445198-445545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
38, 115
               

               
Conread position:
               
141-476
               

               
Cow position:
               
chr6:21737001-21736685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
124, 20
               

               
Conread position:
               
141-478
               

               
Cow position:
               
chr6:35842533-35842879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 162
               

               
Conread position:
               
141-480
               

               
Cow position:
               
chr6:28482902-28483238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 110
               

               
Conread position:
               
141-482
               

               
Cow position:
               
chr6:19695688-19696032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
32, 51
               

               
Conread position:
               
141-483
               

               
Cow position:
               
chr6:63720078-63720416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 191
               

               
Conread position:
               
141-484
               

               
Cow position:
               
chr6:45690706-45690393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
141-484
               

               
Cow position:
               
chr6:47305222-47305567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
45, 91
               

               
Conread position:
               
141-485
               

               
Cow position:
               
chr6:5114162-5113821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
276, 92
               

               
Conread position:
               
141-485
               

               
Cow position:
               
chr6:21587534-21587208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
46, 86
               

               
Conread position:
               
141-485
               

               
Cow position:
               
chr6:46860281-46859944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
125, 63
               

               
Conread position:
               
141-486
               

               
Cow position:
               
chr6:41733508-41733862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 106
               

               
Conread position:
               
141-486
               

               
Cow position:
               
chr6:54132700-54133038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
113, 64
               

               
Conread position:
               
141-486
               

               
Cow position:
               
chr6:63047460-63047803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
48, 204
               

               
Conread position:
               
141-487
               

               
Cow position:
               
chr6:19996504-19996843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 12
               

               
Conread position:
               
141-487
               

               
Cow position:
               
chr6:43135061-43134713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 80
               

               
Conread position:
               
141-487
               

               
Cow position:
               
chr6:62669757-62670099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
272, 11
               

               
Conread position:
               
141-488
               

               
Cow position:
               
chr6:13367176-13367511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
241, 44
               

               
Conread position:
               
141-488
               

               
Cow position:
               
chr6:19755190-19754849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
114, 46
               

               
Conread position:
               
141-488
               

               
Cow position:
               
chr6:45596655-45596317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 112
               

               
Conread position:
               
141-488
               

               
Cow position:
               
chr6:48010638-48010295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
45, 105
               

               
Conread position:
               
141-488
               

               
Cow position:
               
chr6:60739898-60740239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 117
               

               
Conread position:
               
141-488
               

               
Cow position:
               
chr6:63252040-63251692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
52, 117
               

               
Conread position:
               
141-489
               

               
Cow position:
               
chr6:16765514-16765168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
45, 92
               

               
Conread position:
               
141-489
               

               
Cow position:
               
chr6:19401740-19402075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 8
               

               
Conread position:
               
141-489
               

               
Cow position:
               
chr6:34475667-34475328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
49, 15
               

               
Conread position:
               
141-489
               

               
Cow position:
               
chr6:61515313-61514968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
27, 197
               

               
Conread position:
               
141-490
               

               
Cow position:
               
chr6:12337867-12338221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 121
               

               
Conread position:
               
141-490
               

               
Cow position:
               
chr6:12652089-12652411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
54, 110
               

               
Conread position:
               
141-490
               

               
Cow position:
               
chr6:19446142-19446484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 67
               

               
Conread position:
               
141-490
               

               
Cow position:
               
chr6:21534938-21535271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 65
               

               
Conread position:
               
141-490
               

               
Cow position:
               
chr6:23532549-23532877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 32
               

               
Conread position:
               
141-490
               

               
Cow position:
               
chr6:24781676-24781320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 121
               

               
Conread position:
               
141-490
               

               
Cow position:
               
chr6:26450204-26450530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
141-490
               

               
Cow position:
               
chr6:32867323-32866990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
251, 39
               

               
Conread position:
               
141-490
               

               
Cow position:
               
chr6:34196267-34195931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 109
               

               
Conread position:
               
141-490
               

               
Cow position:
               
chr6:36196097-36196433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
250, 81
               

               
Conread position:
               
141-490
               

               
Cow position:
               
chr6:39358460-39358112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 44
               

               
Conread position:
               
141-490
               

               
Cow position:
               
chr6:48803754-48803409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 110
               

               
Conread position:
               
141-490
               

               
Cow position:
               
chr6:49398731-49398398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
269, 114
               

               
Conread position:
               
141-490
               

               
Cow position:
               
chr6:53841616-53841272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
280, 62
               

               
Conread position:
               
141-490
               

               
Cow position:
               
chr6:60118031-60118373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 117
               

               
Conread position:
               
141-490
               

               
Cow position:
               
chr6:65903734-65903395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 65
               

               
Conread position:
               
141-495
               

               
Cow position:
               
chr6:8125211-8125566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
45, 75
               

               
Conread position:
               
141-495
               

               
Cow position:
               
chr6:10225756-10225414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
276, 104
               

               
Conread position:
               
141-498
               

               
Cow position:
               
chr6:3929201-3929562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
233, 108
               

               
Conread position:
               
141-498
               

               
Cow position:
               
chr6:45388213-45388560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
173, 109
               

               
Conread position:
               
141-499
               

               
Cow position:
               
chr6:7539457-7539813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
50, 31
               

               
Conread position:
               
141-499
               

               
Cow position:
               
chr6:8804647-8804303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
264, 109
               

               
Conread position:
               
141-499
               

               
Cow position:
               
chr6:9219156-9219501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
44, 52
               

               
Conread position:
               
141-499
               

               
Cow position:
               
chr6:11192583-11192241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
122, 46
               

               
Conread position:
               
141-499
               

               
Cow position:
               
chr6:15243139-15243499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
145, 72
               

               
Conread position:
               
141-499
               

               
Cow position:
               
chr6:15447321-15446953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 195
               

               
Conread position:
               
141-499
               

               
Cow position:
               
chr6:16103320-16102952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 91
               

               
Conread position:
               
141-499
               

               
Cow position:
               
chr6:16700142-16700494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 115
               

               
Conread position:
               
141-499
               

               
Cow position:
               
chr6:17997432-17997077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 93
               

               
Conread position:
               
141-499
               

               
Cow position:
               
chr6:27888235-27888583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 17
               

               
Conread position:
               
141-499
               

               
Cow position:
               
chr6:28164681-28165045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
55, 45
               

               
Conread position:
               
141-499
               

               
Cow position:
               
chr6:30123309-30122929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
41, 272
               

               
Conread position:
               
141-499
               

               
Cow position:
               
chr6:36202711-36203061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
262, 64
               

               
Conread position:
               
141-499
               

               
Cow position:
               
chr6:36652302-36652639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 109
               

               
Conread position:
               
141-499
               

               
Cow position:
               
chr6:38441065-38441420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
286, 28
               

               
Conread position:
               
141-499
               

               
Cow position:
               
chr6:40032076-40032419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 89
               

               
Conread position:
               
141-499
               

               
Cow position:
               
chr6:45065131-45064795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
141-499
               

               
Cow position:
               
chr6:47355707-47356066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 95
               

               
Conread position:
               
141-499
               

               
Cow position:
               
chr6:47519933-47520294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
143, 116
               

               
Conread position:
               
141-499
               

               
Cow position:
               
chr6:50467018-50467378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
43, 106
               

               
Conread position:
               
141-499
               

               
Cow position:
               
chr6:60819398-60819755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
46, 115
               

               
Conread position:
               
141-499
               

               
Cow position:
               
chr6:62324874-62325231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
50, 111
               

               
Conread position:
               
141-499
               

               
Cow position:
               
chr6:65264653-65264311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 17
               

               
Conread position:
               
141-500
               

               
Cow position:
               
chr6:5609557-5609203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 60
               

               
Conread position:
               
141-500
               

               
Cow position:
               
chr6:12668986-12669339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 83
               

               
Conread position:
               
141-500
               

               
Cow position:
               
chr6:17313617-17313979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 104
               

               
Conread position:
               
141-500
               

               
Cow position:
               
chr6:31847337-31847003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
132, 108
               

               
Conread position:
               
141-500
               

               
Cow position:
               
chr6:38609851-38610213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 110
               

               
Conread position:
               
141-500
               

               
Cow position:
               
chr6:38640114-38640473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
128, 108
               

               
Conread position:
               
141-500
               

               
Cow position:
               
chr6:44566299-44566667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
41, 198
               

               
Conread position:
               
141-500
               

               
Cow position:
               
chr6:47574788-47575132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 110
               

               
Conread position:
               
141-500
               

               
Cow position:
               
chr6:53460689-53460331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 194
               

               
Conread position:
               
141-501
               

               
Cow position:
               
chr6:120126-120478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 49
               

               
Conread position:
               
141-501
               

               
Cow position:
               
chr6:611445-611784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 48
               

               
Conread position:
               
141-501
               

               
Cow position:
               
chr6:3952405-3952761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
282, 12
               

               
Conread position:
               
141-501
               

               
Cow position:
               
chr6:9008728-9008384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 114
               

               
Conread position:
               
141-501
               

               
Cow position:
               
chr6:15300936-15300597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 91
               

               
Conread position:
               
141-501
               

               
Cow position:
               
chr6:15305464-15305813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
269, 89
               

               
Conread position:
               
141-501
               

               
Cow position:
               
chr6:21004551-21004922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 88
               

               
Conread position:
               
141-501
               

               
Cow position:
               
chr6:21590576-21590943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
93, 17
               

               
Conread position:
               
141-501
               

               
Cow position:
               
chr6:64431822-64432175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 33
               

               
Conread position:
               
141-504
               

               
Cow position:
               
chr6:10106109-10105740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 202
               

               
Conread position:
               
141-504
               

               
Cow position:
               
chr6:13040340-13040699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
272, 65
               

               
Conread position:
               
141-504
               

               
Cow position:
               
chr6:22332509-22332150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
49, 85
               

               
Conread position:
               
141-504
               

               
Cow position:
               
chr6:23695878-23696238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 8
               

               
Conread position:
               
141-504
               

               
Cow position:
               
chr6:24468510-24468155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 117
               

               
Conread position:
               
141-504
               

               
Cow position:
               
chr6:26728643-26728299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 88
               

               
Conread position:
               
141-504
               

               
Cow position:
               
chr6:44194659-44194312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 89
               

               
Conread position:
               
141-504
               

               
Cow position:
               
chr6:54365445-54365084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 12
               

               
Conread position:
               
141-505
               

               
Cow position:
               
chr6:1703701-1704041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
266, 100
               

               
Conread position:
               
141-505
               

               
Cow position:
               
chr6:29484973-29485329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
272, 78
               

               
Conread position:
               
141-505
               

               
Cow position:
               
chr6:32268993-32268639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
272, 109
               

               
Conread position:
               
141-505
               

               
Cow position:
               
chr6:53024913-53024564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
15, 85
               

               
Conread position:
               
141-505
               

               
Cow position:
               
chr6:54490861-54490498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 125
               

               
Conread position:
               
141-506
               

               
Cow position:
               
chr6:7190236-7189884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 29
               

               
Conread position:
               
141-506
               

               
Cow position:
               
chr6:8562603-8562960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 109
               

               
Conread position:
               
141-506
               

               
Cow position:
               
chr6:15937965-15937604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
286, 11
               

               
Conread position:
               
141-506
               

               
Cow position:
               
chr6:16625830-16626175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
108, 45
               

               
Conread position:
               
141-506
               

               
Cow position:
               
chr6:17090482-17090826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 109
               

               
Conread position:
               
141-506
               

               
Cow position:
               
chr6:25615219-25614841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 24
               

               
Conread position:
               
141-506
               

               
Cow position:
               
chr6:32121794-32122141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
137, 89
               

               
Conread position:
               
141-506
               

               
Cow position:
               
chr6:32287521-32287877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 114
               

               
Conread position:
               
141-506
               

               
Cow position:
               
chr6:35725978-35726337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 105
               

               
Conread position:
               
141-506
               

               
Cow position:
               
chr6:47026364-47026704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
132, 58
               

               
Conread position:
               
141-506
               

               
Cow position:
               
chr6:51581370-51581005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
124, 95
               

               
Conread position:
               
141-506
               

               
Cow position:
               
chr6:55282403-55282046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 26
               

               
Conread position:
               
141-506
               

               
Cow position:
               
chr6:55475129-55475484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
53, 136
               

               
Conread position:
               
141-506
               

               
Cow position:
               
chr6:62437298-62437664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
59, 24
               

               
Conread position:
               
141-507
               

               
Cow position:
               
chr6:33917964-33917610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
57, 119
               

               
Conread position:
               
141-507
               

               
Cow position:
               
chr6:47150662-47151066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
49, 121
               

               
Conread position:
               
141-507
               

               
Cow position:
               
chr6:48572996-48572651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
105, 36
               

               
Conread position:
               
141-507
               

               
Cow position:
               
chr6:67574294-67574641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
272, 19
               

               
Conread position:
               
141-509
               

               
Cow position:
               
chr6:13687929-13687565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
132, 22
               

               
Conread position:
               
141-512
               

               
Cow position:
               
chr6:57546331-57545976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 41
               

               
Conread position:
               
141-513
               

               
Cow position:
               
chr6:5095671-5095287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 121
               

               
Conread position:
               
141-513
               

               
Cow position:
               
chr6:8965976-8966339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 49
               

               
Conread position:
               
141-513
               

               
Cow position:
               
chr6:18447623-18447261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
78, 11
               

               
Conread position:
               
141-515
               

               
Cow position:
               
chr6:28148134-28148520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
36, 12
               

               
Conread position:
               
141-515
               

               
Cow position:
               
chr6:56849897-56850277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 15
               

               
Conread position:
               
141-516
               

               
Cow position:
               
chr6:24031262-24031620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 91
               

               
Conread position:
               
141-517
               

               
Cow position:
               
chr6:57405246-57404878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
37, 115
               

               
Conread position:
               
141-518
               

               
Cow position:
               
chr6:11246646-11247027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 109
               

               
Conread position:
               
141-528
               

               
Cow position:
               
chr6:4383369-4383746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
288, 114
               

               
Conread position:
               
141-528
               

               
Cow position:
               
chr6:15242719-15243110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 63
               

               
Conread position:
               
141-530
               

               
Cow position:
               
chr6:49421900-49421523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
133, 64
               

               
Conread position:
               
142-245
               

               
Cow position:
               
chr6:2012903-2013006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
142-266
               

               
Cow position:
               
chr6:15923115-15922993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
142-283
               

               
Cow position:
               
chr6:28080015-28079873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
63, 103
               

               
Conread position:
               
142-291
               

               
Cow position:
               
chr6:30826148-30826000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
120, 108
               

               
Conread position:
               
142-303
               

               
Cow position:
               
chr6:46400527-46400370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
40, 11
               

               
Conread position:
               
142-308
               

               
Cow position:
               
chr6:53711000-53711163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
142-317
               

               
Cow position:
               
chr6:14839142-14838968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
57, 105
               

               
Conread position:
               
142-320
               

               
Cow position:
               
chr6:54293991-54294162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
41, 109
               

               
Conread position:
               
142-326
               

               
Cow position:
               
chr6:57298900-57299081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
42, 115
               

               
Conread position:
               
142-330
               

               
Cow position:
               
chr6:21542204-21542393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
130, 113
               

               
Conread position:
               
142-330
               

               
Cow position:
               
chr6:44127490-44127681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
142-342
               

               
Cow position:
               
chr6:7824648-7824848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
107, 62
               

               
Conread position:
               
142-392
               

               
Cow position:
               
chr6:899406-899165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
142-400
               

               
Cow position:
               
chr6:28318291-28318532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
171, 16
               

               
Conread position:
               
142-408
               

               
Cow position:
               
chr6:7130997-7130736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
11, 64
               

               
Conread position:
               
142-408
               

               
Cow position:
               
chr6:35613530-35613273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
131, 55
               

               
Conread position:
               
142-408
               

               
Cow position:
               
chr6:37634667-37634939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
14, 266
               

               
Conread position:
               
142-420
               

               
Cow position:
               
chr6:28977151-28976884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
131, 61
               

               
Conread position:
               
142-421
               

               
Cow position:
               
chr6:377015-377278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
44, 13
               

               
Conread position:
               
142-421
               

               
Cow position:
               
chr6:11169589-11169860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
214, 45
               

               
Conread position:
               
142-421
               

               
Cow position:
               
chr6:53651927-53652197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
112, 71
               

               
Conread position:
               
142-422
               

               
Cow position:
               
chr6:53519739-53519467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 21
               

               
Conread position:
               
142-425
               

               
Cow position:
               
chr6:6098398-6098105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
67, 11
               

               
Conread position:
               
142-425
               

               
Cow position:
               
chr6:21110848-21111112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
13, 21
               

               
Conread position:
               
142-433
               

               
Cow position:
               
chr6:68049319-68049585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
39, 86
               

               
Conread position:
               
142-435
               

               
Cow position:
               
chr6:37199651-37199367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 113
               

               
Conread position:
               
142-462
               

               
Cow position:
               
chr6:21514735-21514403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
39, 116
               

               
Conread position:
               
142-475
               

               
Cow position:
               
chr6:38641378-38641710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 115
               

               
Conread position:
               
142-488
               

               
Cow position:
               
chr6:24004427-24004749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
142-489
               

               
Cow position:
               
chr6:3595672-3596024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
44, 102
               

               
Conread position:
               
142-490
               

               
Cow position:
               
chr6:7128516-7128173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
77, 14
               

               
Conread position:
               
142-490
               

               
Cow position:
               
chr6:21062008-21061660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 118
               

               
Conread position:
               
142-490
               

               
Cow position:
               
chr6:36470685-36470347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 111
               

               
Conread position:
               
142-497
               

               
Cow position:
               
chr6:31535683-31535336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
128, 63
               

               
Conread position:
               
142-499
               

               
Cow position:
               
chr6:35181375-35181014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 67
               

               
Conread position:
               
142-499
               

               
Cow position:
               
chr6:66433826-66434194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
13, 77
               

               
Conread position:
               
142-500
               

               
Cow position:
               
chr6:34251407-34251057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
49, 106
               

               
Conread position:
               
142-503
               

               
Cow position:
               
chr6:6965503-6965152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
271, 23
               

               
Conread position:
               
142-505
               

               
Cow position:
               
chr6:10400017-10399661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
42, 79
               

               
Conread position:
               
142-506
               

               
Cow position:
               
chr6:19264612-19264251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
290, 113
               

               
Conread position:
               
142-515
               

               
Cow position:
               
chr6:2607500-2607863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
271, 44
               

               
Conread position:
               
143-297
               

               
Cow position:
               
chr6:48187697-48187546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
38, 115
               

               
Conread position:
               
143-298
               

               
Cow position:
               
chr6:54885028-54884865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
143-298
               

               
Cow position:
               
chr6:58364126-58363970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
143-300
               

               
Cow position:
               
chr6:58732424-58732263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
38, 132
               

               
Conread position:
               
143-306
               

               
Cow position:
               
chr6:52025769-52025604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
39, 109
               

               
Conread position:
               
143-307
               

               
Cow position:
               
chr6:16737905-16738066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
43, 50
               

               
Conread position:
               
143-328
               

               
Cow position:
               
chr6:6995065-6994883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
128, 47
               

               
Conread position:
               
143-370
               

               
Cow position:
               
chr6:54430708-54430936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
43, 194
               

               
Conread position:
               
143-424
               

               
Cow position:
               
chr6:60667303-60667571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
39, 109
               

               
Conread position:
               
143-432
               

               
Cow position:
               
chr6:54991115-54990833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
147, 25
               

               
Conread position:
               
143-462
               

               
Cow position:
               
chr6:16191554-16191867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
42, 196
               

               
Conread position:
               
143-478
               

               
Cow position:
               
chr6:52412743-52413081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
38, 110
               

               
Conread position:
               
143-482
               

               
Cow position:
               
chr6:50746869-50747223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
43, 198
               

               
Conread position:
               
143-487
               

               
Cow position:
               
chr6:21399868-21399526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
43, 91
               

               
Conread position:
               
143-488
               

               
Cow position:
               
chr6:35471634-35471284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
107, 197
               

               
Conread position:
               
143-489
               

               
Cow position:
               
chr6:20157214-20157565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
35, 109
               

               
Conread position:
               
143-489
               

               
Cow position:
               
chr6:55209441-55209790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
43, 110
               

               
Conread position:
               
143-489
               

               
Cow position:
               
chr6:61631724-61631378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 113
               

               
Conread position:
               
143-493
               

               
Cow position:
               
chr6:38853769-38853422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 60
               

               
Conread position:
               
143-499
               

               
Cow position:
               
chr6:48281881-48282235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
43, 83
               

               
Conread position:
               
143-506
               

               
Cow position:
               
chr6:23402104-23401748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
278, 43
               

               
Conread position:
               
143-506
               

               
Cow position:
               
chr6:50577409-50577761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
164, 113
               

               
Conread position:
               
143-530
               

               
Cow position:
               
chr6:61113639-61114037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
43, 178
               

               
Conread position:
               
144-298
               

               
Cow position:
               
chr6:64449275-64449428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
41, 114
               

               
Conread position:
               
144-328
               

               
Cow position:
               
chr6:5413705-5413890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
21, 115
               

               
Conread position:
               
144-469
               

               
Cow position:
               
chr6:27851821-27851498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
38, 14
               

               
Conread position:
               
144-486
               

               
Cow position:
               
chr6:67618069-67617720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
50, 194
               

               
Conread position:
               
144-489
               

               
Cow position:
               
chr6:29239825-29240162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
46, 107
               

               
Conread position:
               
144-494
               

               
Cow position:
               
chr6:38207605-38207251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 113
               

               
Conread position:
               
144-500
               

               
Cow position:
               
chr6:33302294-33302637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
37, 120
               

               
Conread position:
               
145-248
               

               
Cow position:
               
chr6:53139038-53138931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
145-283
               

               
Cow position:
               
chr6:56849030-56848890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
89, 106
               

               
Conread position:
               
145-404
               

               
Cow position:
               
chr6:9026404-9026658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
60, 176
               

               
Conread position:
               
145-499
               

               
Cow position:
               
chr6:22850358-22850014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
37, 77
               

               
Conread position:
               
145-499
               

               
Cow position:
               
chr6:52431141-52430781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
42, 106
               

               
Conread position:
               
145-529
               

               
Cow position:
               
chr6:28477065-28477416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
146-487
               

               
Cow position:
               
chr6:46173370-46173030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
37, 110
               

               
Conread position:
               
146-490
               

               
Cow position:
               
chr6:6264531-6264883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 76
               

               
Conread position:
               
146-498
               

               
Cow position:
               
chr6:21231420-21231749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
146-499
               

               
Cow position:
               
chr6:10039609-10039966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 79
               

               
Conread position:
               
146-499
               

               
Cow position:
               
chr6:14949591-14949253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
39, 80
               

               
Conread position:
               
146-499
               

               
Cow position:
               
chr6:16746228-16746586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
40, 112
               

               
Conread position:
               
146-517
               

               
Cow position:
               
chr6:8161810-8161429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
36, 110
               

               
Conread position:
               
147-308
               

               
Cow position:
               
chr6:45160405-45160250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
147-363
               

               
Cow position:
               
chr6:28283754-28283960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
20, 98
               

               
Conread position:
               
147-370
               

               
Cow position:
               
chr6:54036246-54036037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
147-379
               

               
Cow position:
               
chr6:17334167-17333938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
39, 111
               

               
Conread position:
               
147-425
               

               
Cow position:
               
chr6:6470750-6470469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
133, 48
               

               
Conread position:
               
147-432
               

               
Cow position:
               
chr6:582382-582105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
147-484
               

               
Cow position:
               
chr6:51835286-51835623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 104
               

               
Conread position:
               
147-500
               

               
Cow position:
               
chr6:17414559-17414209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
120, 65
               

               
Conread position:
               
147-500
               

               
Cow position:
               
chr6:51526380-51526732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
35, 109
               

               
Conread position:
               
148-266
               

               
Cow position:
               
chr6:61644945-61644825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
42, 7
               

               
Conread position:
               
148-415
               

               
Cow position:
               
chr6:6672992-6673258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
17, 23
               

               
Conread position:
               
148-425
               

               
Cow position:
               
chr6:30973942-30974197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
148-487
               

               
Cow position:
               
chr6:46292454-46292127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 57
               

               
Conread position:
               
148-499
               

               
Cow position:
               
chr6:143482-143140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 82
               

               
Conread position:
               
148-499
               

               
Cow position:
               
chr6:323411-323064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
39, 8
               

               
Conread position:
               
148-501
               

               
Cow position:
               
chr6:14914355-14913991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 159
               

               
Conread position:
               
148-506
               

               
Cow position:
               
chr6:17557271-17557620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
34, 103
               

               
Conread position:
               
148-506
               

               
Cow position:
               
chr6:59603317-59602967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 46
               

               
Conread position:
               
149-386
               

               
Cow position:
               
chr6:54208248-54208013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
37, 25
               

               
Conread position:
               
149-430
               

               
Cow position:
               
chr6:51968954-51969244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
6, 190
               

               
Conread position:
               
149-506
               

               
Cow position:
               
chr6:26043643-26043981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
141, 81
               

               
Conread position:
               
149-507
               

               
Cow position:
               
chr6:53932956-53932596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 60
               

               
Conread position:
               
150-307
               

               
Cow position:
               
chr6:21052617-21052460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
31, 102
               

               
Conread position:
               
150-408
               

               
Cow position:
               
chr6:242700-242935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
37, 100
               

               
Conread position:
               
150-416
               

               
Cow position:
               
chr6:61168667-61168907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
150-499
               

               
Cow position:
               
chr6:16266611-16266969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
41, 125
               

               
Conread position:
               
151-499
               

               
Cow position:
               
chr6:43345553-43345200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
33, 102
               

               
Conread position:
               
151-511
               

               
Cow position:
               
chr6:28156255-28155920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
20, 81
               

               
Conread position:
               
152-312
               

               
Cow position:
               
chr6:60456726-60456881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
48, 15
               

               
Conread position:
               
152-466
               

               
Cow position:
               
chr6:50984119-50984432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
29, 83
               

               
Conread position:
               
152-483
               

               
Cow position:
               
chr6:29000031-28999733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
152-487
               

               
Cow position:
               
chr6:1371336-1371002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
34, 107
               

               
Conread position:
               
152-489
               

               
Cow position:
               
chr6:3978771-3978411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
30, 101
               

               
Conread position:
               
152-489
               

               
Cow position:
               
chr6:18988107-18988421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
79, 122
               

               
Conread position:
               
152-501
               

               
Cow position:
               
chr6:36645282-36645614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
34, 81
               

               
Conread position:
               
152-503
               

               
Cow position:
               
chr6:10176408-10176054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 104
               

               
Conread position:
               
152-506
               

               
Cow position:
               
chr6:24545508-24545840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
118, 48
               

               
Conread position:
               
153-299
               

               
Cow position:
               
chr6:9732950-9732800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
34, 99
               

               
Conread position:
               
153-299
               

               
Cow position:
               
chr6:20230936-20230787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
38, 100
               

               
Conread position:
               
153-343
               

               
Cow position:
               
chr6:28148734-28148918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
153-406
               

               
Cow position:
               
chr6:59718691-59718938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
136, 104
               

               
Conread position:
               
153-407
               

               
Cow position:
               
chr6:8788143-8787894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 96
               

               
Conread position:
               
153-408
               

               
Cow position:
               
chr6:4864653-4864403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
153-422
               

               
Cow position:
               
chr6:9751150-9750899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
153-424
               

               
Cow position:
               
chr6:49002839-49002582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
33, 116
               

               
Conread position:
               
153-424
               

               
Cow position:
               
chr6:66531926-66531664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
122, 87
               

               
Conread position:
               
153-490
               

               
Cow position:
               
chr6:31564443-31564121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 33
               

               
Conread position:
               
153-499
               

               
Cow position:
               
chr6:37149083-37149422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 6
               

               
Conread position:
               
153-505
               

               
Cow position:
               
chr6:62371286-62370941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
28, 104
               

               
Conread position:
               
153-506
               

               
Cow position:
               
chr6:10612755-10613077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
153-516
               

               
Cow position:
               
chr6:29210394-29210737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
339, 11
               

               
Conread position:
               
154-245
               

               
Cow position:
               
chr6:14153224-14153133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
93
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
32, 68
               

               
Conread position:
               
154-488
               

               
Cow position:
               
chr6:7119714-7119401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
154-504
               

               
Cow position:
               
chr6:44078414-44078760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
257, 43
               

               
Conread position:
               
154-507
               

               
Cow position:
               
chr6:46465719-46466067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
269, 100
               

               
Conread position:
               
155-423
               

               
Cow position:
               
chr6:21869751-21869490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
155-439
               

               
Cow position:
               
chr6:35103435-35103154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
31, 18
               

               
Conread position:
               
155-499
               

               
Cow position:
               
chr6:17549084-17548729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 182
               

               
Conread position:
               
155-499
               

               
Cow position:
               
chr6:58370650-58370987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 101
               

               
Conread position:
               
155-506
               

               
Cow position:
               
chr6:60274109-60273764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
74, 14
               

               
Conread position:
               
156-361
               

               
Cow position:
               
chr6:62925099-62924899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
153, 104
               

               
Conread position:
               
156-429
               

               
Cow position:
               
chr6:20196395-20196138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
156-506
               

               
Cow position:
               
chr6:1429537-1429882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 30
               

               
Conread position:
               
157-425
               

               
Cow position:
               
chr6:3592300-3592558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
28, 51
               

               
Conread position:
               
158-329
               

               
Cow position:
               
chr6:12545957-12545787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
26, 87
               

               
Conread position:
               
158-417
               

               
Cow position:
               
chr6:19012965-19013216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
31, 93
               

               
Conread position:
               
158-417
               

               
Cow position:
               
chr6:52901134-52901392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
116, 99
               

               
Conread position:
               
158-423
               

               
Cow position:
               
chr6:65259575-65259334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
134, 15
               

               
Conread position:
               
158-432
               

               
Cow position:
               
chr6:16764752-16764478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
151, 65
               

               
Conread position:
               
158-464
               

               
Cow position:
               
chr6:61524301-61523999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
263, 62
               

               
Conread position:
               
158-489
               

               
Cow position:
               
chr6:39093636-39093975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
92, 188
               

               
Conread position:
               
158-499
               

               
Cow position:
               
chr6:67187586-67187918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
162, 27
               

               
Conread position:
               
158-505
               

               
Cow position:
               
chr6:61269209-61269563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
10, 100
               

               
Conread position:
               
158-508
               

               
Cow position:
               
chr6:6063391-6063046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
25, 99
               

               
Conread position:
               
158-509
               

               
Cow position:
               
chr6:27240106-27239756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
103, 97
               

               
Conread position:
               
159-320
               

               
Cow position:
               
chr6:16411091-16411251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
22, 97
               

               
Conread position:
               
159-490
               

               
Cow position:
               
chr6:17794855-17794524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
28, 46
               

               
Conread position:
               
160-479
               

               
Cow position:
               
chr6:9719021-9718697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
28, 5
               

               
Conread position:
               
161-501
               

               
Cow position:
               
chr6:9736741-9736404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
25, 13
               

               
Conread position:
               
161-525
               

               
Cow position:
               
chr6:13564987-13565352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
109, 143
               

               
Conread position:
               
162-420
               

               
Cow position:
               
chr6:66375426-66375177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
162-507
               

               
Cow position:
               
chr6:19292702-19293050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 72
               

               
Conread position:
               
166-499
               

               
Cow position:
               
chr6:52478506-52478171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 167
               

               
Conread position:
               
167-417
               

               
Cow position:
               
chr6:10487496-10487738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
167-428
               

               
Cow position:
               
chr6:63299123-63298866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
254, 83
               

               
Conread position:
               
167-490
               

               
Cow position:
               
chr6:35435904-35436218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 33
               

               
Conread position:
               
167-506
               

               
Cow position:
               
chr6:19045533-19045874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
17, 85
               

               
Conread position:
               
169-500
               

               
Cow position:
               
chr6:33509701-33510030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
114, 81
               

               
Conread position:
               
170-461
               

               
Cow position:
               
chr6:6067780-6067502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
11, 66
               

               
Conread position:
               
170-499
               

               
Cow position:
               
chr6:24110196-24110524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
16, 54
               

               
Conread position:
               
171-514
               

               
Cow position:
               
chr6:4389820-4390154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
11, 86
               

               
Conread position:
               
172-420
               

               
Cow position:
               
chr6:55502680-55502922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
30, 49
               

               
Conread position:
               
174-491
               

               
Cow position:
               
chr6:35990317-35990006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 53
               

               
Conread position:
               
174-524
               

               
Cow position:
               
chr6:37462938-37463266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 48
               

               
Conread position:
               
175-419
               

               
Cow position:
               
chr6:58608522-58608289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
180, 78
               

               
Conread position:
               
175-432
               

               
Cow position:
               
chr6:23466112-23465865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
238, 70
               

               
Conread position:
               
175-490
               

               
Cow position:
               
chr6:22985941-22985631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
79, 118
               

               
Conread position:
               
175-499
               

               
Cow position:
               
chr6:4468685-4469006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
97, 73
               

               
Conread position:
               
175-500
               

               
Cow position:
               
chr6:28559444-28559781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
52, 15
               

               
Conread position:
               
175-501
               

               
Cow position:
               
chr6:40049985-40050317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
7, 97
               

               
Conread position:
               
176-361
               

               
Cow position:
               
chr6:54365085-54364895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
92, 74
               

               
Conread position:
               
176-489
               

               
Cow position:
               
chr6:5330332-5330644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
9, 33
               

               
Conread position:
               
179-461
               

               
Cow position:
               
chr6:2623703-2623969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
180-488
               

               
Cow position:
               
chr6:22525254-22525554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
205, 70
               

               
Conread position:
               
180-498
               

               
Cow position:
               
chr6:46557976-46558293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 76
               

               
Conread position:
               
180-499
               

               
Cow position:
               
chr6:16288130-16287828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
233, 70
               

               
Conread position:
               
181-417
               

               
Cow position:
               
chr6:33929626-33929394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
89, 8
               

               
Conread position:
               
181-421
               

               
Cow position:
               
chr6:2153668-2153442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
181-487
               

               
Cow position:
               
chr6:41375693-41375998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
85, 69
               

               
Conread position:
               
181-489
               

               
Cow position:
               
chr6:24536618-24536296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
85, 9
               

               
Conread position:
               
181-506
               

               
Cow position:
               
chr6:8599926-8600252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
9, 71
               

               
Conread position:
               
182-499
               

               
Cow position:
               
chr6:37395483-37395163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 9
               

               
Conread position:
               
182-504
               

               
Cow position:
               
chr6:694223-693901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
183, 47
               

               
Conread position:
               
184-328
               

               
Cow position:
               
chr6:30688686-30688547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
185-362
               

               
Cow position:
               
chr6:36493622-36493443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
88, 70
               

               
Conread position:
               
185-498
               

               
Cow position:
               
chr6:55546250-55545933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
85, 70
               

               
Conread position:
               
185-507
               

               
Cow position:
               
chr6:17068722-17068407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
228, 74
               

               
Conread position:
               
186-486
               

               
Cow position:
               
chr6:60516756-60517065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
241, 26
               

               
Conread position:
               
187-422
               

               
Cow position:
               
chr6:36284171-36284398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
99, 63
               

               
Conread position:
               
187-507
               

               
Cow position:
               
chr6:23353482-23353803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
192, 68
               

               
Conread position:
               
189-405
               

               
Cow position:
               
chr6:61142633-61142421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
120, 61
               

               
Conread position:
               
189-489
               

               
Cow position:
               
chr6:68272512-68272833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
81, 34
               

               
Conread position:
               
189-530
               

               
Cow position:
               
chr6:18118121-18117778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
79, 61
               

               
Conread position:
               
190-470
               

               
Cow position:
               
chr6:67643759-67643478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
147, 60
               

               
Conread position:
               
190-498
               

               
Cow position:
               
chr6:9302784-9302486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
17, 66
               

               
Conread position:
               
190-506
               

               
Cow position:
               
chr6:22215536-22215215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
125, 60
               

               
Conread position:
               
191-337
               

               
Cow position:
               
chr6:26765081-26764937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
81, 59
               

               
Conread position:
               
192-423
               

               
Cow position:
               
chr6:28179012-28178796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
75, 48
               

               
Conread position:
               
192-514
               

               
Cow position:
               
chr6:67281831-67282138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 58
               

               
Conread position:
               
193-507
               

               
Cow position:
               
chr6:66590014-66590319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
12, 88
               

               
Conread position:
               
194-439
               

               
Cow position:
               
chr6:35896404-35896179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
194-501
               

               
Cow position:
               
chr6:60468173-60468472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
208, 61
               

               
Conread position:
               
195-466
               

               
Cow position:
               
chr6:17954312-17954040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
84, 50
               

               
Conread position:
               
199-489
               

               
Cow position:
               
chr6:51530245-51529960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
36, 52
               

               
Conread position:
               
199-499
               

               
Cow position:
               
chr6:23025172-23024858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
69, 144
               

               
Conread position:
               
200-432
               

               
Cow position:
               
chr6:18144135-18144365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
127, 31
               

               
Conread position:
               
201-489
               

               
Cow position:
               
chr6:6195168-6194872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
74, 56
               

               
Conread position:
               
201-489
               

               
Cow position:
               
chr6:7627905-7628199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
118, 55
               

               
Conread position:
               
202-408
               

               
Cow position:
               
chr6:17527644-17527445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
204-446
               

               
Cow position:
               
chr6:32809222-32809463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
128, 40
               

               
Conread position:
               
205-508
               

               
Cow position:
               
chr6:48468951-48469253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
195, 38
               

               
Conread position:
               
206-482
               

               
Cow position:
               
chr6:33451020-33450754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
217, 8
               

               
Conread position:
               
206-488
               

               
Cow position:
               
chr6:18608867-18608581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
96, 44
               

               
Conread position:
               
206-490
               

               
Cow position:
               
chr6:60144251-60143968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
68, 50
               

               
Conread position:
               
206-498
               

               
Cow position:
               
chr6:59438500-59438222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
207-490
               

               
Cow position:
               
chr6:50504401-50504687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
23, 127
               

               
Conread position:
               
208-437
               

               
Cow position:
               
chr6:68652403-68652178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
66, 51
               

               
Conread position:
               
208-498
               

               
Cow position:
               
chr6:56986696-56986409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
10, 43
               

               
Conread position:
               
209-461
               

               
Cow position:
               
chr6:16352396-16352161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
209-500
               

               
Cow position:
               
chr6:12964804-12965095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
190, 18
               

               
Conread position:
               
210-460
               

               
Cow position:
               
chr6:31078920-31078667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
117, 55
               

               
Conread position:
               
211-500
               

               
Cow position:
               
chr6:2078867-2078576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
39, 102
               

               
Conread position:
               
212-429
               

               
Cow position:
               
chr6:47306184-47305984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
180, 38
               

               
Conread position:
               
212-432
               

               
Cow position:
               
chr6:55535795-55535584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
213-408
               

               
Cow position:
               
chr6:32853141-32853331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
54, 43
               

               
Conread position:
               
213-485
               

               
Cow position:
               
chr6:2584896-2585167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
217, 36
               

               
Conread position:
               
213-499
               

               
Cow position:
               
chr6:55417572-55417293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
94, 44
               

               
Conread position:
               
213-506
               

               
Cow position:
               
chr6:3350974-3351274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
37, 126
               

               
Conread position:
               
214-489
               

               
Cow position:
               
chr6:47958768-47959035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
53, 36
               

               
Conread position:
               
215-504
               

               
Cow position:
               
chr6:67451415-67451128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
211, 15
               

               
Conread position:
               
216-467
               

               
Cow position:
               
chr6:7801436-7801187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
59, 39
               

               
Conread position:
               
220-504
               

               
Cow position:
               
chr6:66570399-66570670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
39, 113
               

               
Conread position:
               
223-536
               

               
Cow position:
               
chr6:34119390-34119088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
56, 32
               

               
Conread position:
               
225-499
               

               
Cow position:
               
chr6:8094324-8094044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
52, 32
               

               
Conread position:
               
227-421
               

               
Cow position:
               
chr6:19131398-19131587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
48, 30
               

               
Conread position:
               
228-506
               

               
Cow position:
               
chr6:69334342-69334070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
38, 29
               

               
Conread position:
               
229-490
               

               
Cow position:
               
chr6:41656073-41655824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
42, 28
               

               
Conread position:
               
229-501
               

               
Cow position:
               
chr6:67451675-67451423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
42, 10
               

               
Conread position:
               
230-481
               

               
Cow position:
               
chr6:57287688-57287449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
230-506
               

               
Cow position:
               
chr6:56715791-56716054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
132, 23
               

               
Conread position:
               
232-487
               

               
Cow position:
               
chr6:41015003-41014746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
189, 18
               

               
Conread position:
               
232-504
               

               
Cow position:
               
chr6:63065798-63066081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
40, 25
               

               
Conread position:
               
233-498
               

               
Cow position:
               
chr6:1941863-1941595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
22, 103
               

               
Conread position:
               
233-504
               

               
Cow position:
               
chr6:48097627-48097359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
108, 22
               

               
Conread position:
               
233-504
               

               
Cow position:
               
chr6:62056587-62056855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
36, 24
               

               
Conread position:
               
234-487
               

               
Cow position:
               
chr6:57089172-57089432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
45, 23
               

               
Conread position:
               
234-508
               

               
Cow position:
               
chr6:47885046-47884798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
236-507
               

               
Cow position:
               
chr6:53546013-53546277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
237-430
               

               
Cow position:
               
chr6:53089986-53090174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
34, 20
               

               
Conread position:
               
237-506
               

               
Cow position:
               
chr6:21293518-21293251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
43, 13
               

               
Conread position:
               
243-499
               

               
Cow position:
               
chr6:20219794-20219539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
25, 12
               

               
Conread position:
               
250-501
               

               
Cow position:
               
chr6:50810681-50810433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
92, 18
               

               
Conread position:
               
256-504
               

               
Cow position:
               
chr6:42034767-42035016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
6, 74
               

               
Conread position:
               
257-425
               

               
Cow position:
               
chr6:67806021-67805854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
13, 78
               

               
Conread position:
               
257-489
               

               
Cow position:
               
chr6:1103739-1103515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
156, 21
               

               
Conread position:
               
257-494
               

               
Cow position:
               
chr6:48379619-48379376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
6, 77
               

               
Conread position:
               
257-499
               

               
Cow position:
               
chr6:21475721-21475965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
10, 78
               

               
Conread position:
               
258-489
               

               
Cow position:
               
chr6:32453383-32453619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
158, 74
               

               
Conread position:
               
259-514
               

               
Cow position:
               
chr6:1002263-1002013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
163, 16
               

               
Conread position:
               
260-506
               

               
Cow position:
               
chr6:1475345-1475583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
162, 72
               

               
Conread position:
               
262-499
               

               
Cow position:
               
chr6:55548533-55548294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
26, 71
               

               
Conread position:
               
263-499
               

               
Cow position:
               
chr6:8688847-8688612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
11, 72
               

               
Conread position:
               
264-455
               

               
Cow position:
               
chr6:61575828-61576010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
10, 46
               

               
Conread position:
               
264-506
               

               
Cow position:
               
chr6:62078927-62079165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
156, 32
               

               
Conread position:
               
268-506
               

               
Cow position:
               
chr6:26155156-26155395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
145, 65
               

               
Conread position:
               
270-490
               

               
Cow position:
               
chr6:37692761-37692980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
155, 36
               

               
Conread position:
               
270-490
               

               
Cow position:
               
chr6:61109797-61110013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
161, 63
               

               
Conread position:
               
270-490
               

               
Cow position:
               
chr6:67069805-67069584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
97, 33
               

               
Conread position:
               
270-506
               

               
Cow position:
               
chr6:54127803-54127574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
271-490
               

               
Cow position:
               
chr6:43787902-43787677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
10, 64
               

               
Conread position:
               
271-490
               

               
Cow position:
               
chr6:58725380-58725598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
10, 62
               

               
Conread position:
               
271-500
               

               
Cow position:
               
chr6:57079434-57079665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
152, 61
               

               
Conread position:
               
271-501
               

               
Cow position:
               
chr6:21470418-21470191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
151, 61
               

               
Conread position:
               
271-501
               

               
Cow position:
               
chr6:35171616-35171857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
49, 39
               

               
Conread position:
               
272-481
               

               
Cow position:
               
chr6:1871186-1870975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
142, 60
               

               
Conread position:
               
273-489
               

               
Cow position:
               
chr6:9832219-9832427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
158, 59
               

               
Conread position:
               
276-504
               

               
Cow position:
               
chr6:28089032-28088802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
155, 56
               

               
Conread position:
               
277-495
               

               
Cow position:
               
chr6:12623532-12623744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
136, 55
               

               
Conread position:
               
277-499
               

               
Cow position:
               
chr6:60777778-60778014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
279-490
               

               
Cow position:
               
chr6:50771340-50771130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
143, 26
               

               
Conread position:
               
282-425
               

               
Cow position:
               
chr6:21066862-21066722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
37, 51
               

               
Conread position:
               
284-501
               

               
Cow position:
               
chr6:16090927-16091138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
287-504
               

               
Cow position:
               
chr6:60850727-60850942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
54, 29
               

               
Conread position:
               
288-499
               

               
Cow position:
               
chr6:51933582-51933779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
291-506
               

               
Cow position:
               
chr6:23938091-23938297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
293-489
               

               
Cow position:
               
chr6:21184190-21183993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
130, 39
               

               
Conread position:
               
293-499
               

               
Cow position:
               
chr6:22876898-22876688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
130, 40
               

               
Conread position:
               
296-507
               

               
Cow position:
               
chr6:8468701-8468908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
127, 36
               

               
Conread position:
               
302-500
               

               
Cow position:
               
chr6:53711444-53711642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
135, 30
               

               
Conread position:
               
303-499
               

               
Cow position:
               
chr6:25773173-25772981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
118, 29
               

               
Conread position:
               
313-501
               

               
Cow position:
               
chr6:14383723-14383919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
28, 74
               

               
Conread position:
               
314-499
               

               
Cow position:
               
chr6:44544095-44543907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
99, 18
               

               
Conread position:
               
314-499
               

               
Cow position:
               
chr6:45160004-45159817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
107, 29
               

               
Conread position:
               
314-507
               

               
Cow position:
               
chr6:15172619-15172803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
315-499
               

               
Cow position:
               
chr6:59297107-59297285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
319-499
               

               
Cow position:
               
chr6:66839249-66839433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
324-499
               

               
Cow position:
               
chr6:34423400-34423220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
326-507
               

               
Cow position:
               
chr6:41226769-41226601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
327-490
               

               
Cow position:
               
chr6:8726740-8726908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
330-493
               

               
Cow position:
               
chr6:27219233-27219401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
334-461
               

               
Cow position:
               
chr6:45535740-45535612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
67, 100
               

               
Conread position:
               
334-486
               

               
Cow position:
               
chr6:2757854-2758009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
335-506
               

               
Cow position:
               
chr6:34463517-34463345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
88, 153
               

               
Conread position:
               
336-475
               

               
Cow position:
               
chr6:17412495-17412357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
336-486
               

               
Cow position:
               
chr6:54406727-54406576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
85, 9
               

               
Conread position:
               
336-490
               

               
Cow position:
               
chr6:21350961-21350800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
77, 30
               

               
Conread position:
               
336-501
               

               
Cow position:
               
chr6:411144-410977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
95, 38
               

               
Conread position:
               
336-501
               

               
Cow position:
               
chr6:32006383-32006214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
336-501
               

               
Cow position:
               
chr6:41657339-41657507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
336-511
               

               
Cow position:
               
chr6:48278817-48278645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
97, 133
               

               
Conread position:
               
337-490
               

               
Cow position:
               
chr6:4699780-4699936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
337-490
               

               
Cow position:
               
chr6:4755887-4756035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
19, 86
               

               
Conread position:
               
337-492
               

               
Cow position:
               
chr6:63182361-63182518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
337-501
               

               
Cow position:
               
chr6:3936855-3937028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
86, 163
               

               
Conread position:
               
337-504
               

               
Cow position:
               
chr6:35342107-35341943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
90, 55
               

               
Conread position:
               
337-507
               

               
Cow position:
               
chr6:5820174-5820012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
168, 43
               

               
Conread position:
               
338-506
               

               
Cow position:
               
chr6:16137697-16137520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
339-485
               

               
Cow position:
               
chr6:40682591-40682442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
94, 80
               

               
Conread position:
               
339-486
               

               
Cow position:
               
chr6:23594019-23594162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
70, 81
               

               
Conread position:
               
339-490
               

               
Cow position:
               
chr6:12631573-12631724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
81, 125
               

               
Conread position:
               
339-513
               

               
Cow position:
               
chr6:38032932-38033110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
74, 160
               

               
Conread position:
               
340-487
               

               
Cow position:
               
chr6:15058452-15058603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
340-487
               

               
Cow position:
               
chr6:45921138-45920992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
66, 59
               

               
Conread position:
               
340-488
               

               
Cow position:
               
chr6:23942584-23942445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
340-489
               

               
Cow position:
               
chr6:50883600-50883448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
340-490
               

               
Cow position:
               
chr6:30825693-30825546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
340-499
               

               
Cow position:
               
chr6:16411686-16411853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
340-499
               

               
Cow position:
               
chr6:35985061-35984896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
83, 157
               

               
Conread position:
               
340-503
               

               
Cow position:
               
chr6:15974448-15974277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
340-509
               

               
Cow position:
               
chr6:58173425-58173592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
340-513
               

               
Cow position:
               
chr6:59265625-59265461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
341-489
               

               
Cow position:
               
chr6:34076238-34076393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
341-507
               

               
Cow position:
               
chr6:47173951-47173790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
342-508
               

               
Cow position:
               
chr6:7291393-7291562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
342-535
               

               
Cow position:
               
chr6:53811660-53811862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
85, 164
               

               
Conread position:
               
343-507
               

               
Cow position:
               
chr6:21175416-21175582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
349-504
               

               
Cow position:
               
chr6:6547423-6547270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
352-497
               

               
Cow position:
               
chr6:40833927-40833784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
54, 45
               

               
Conread position:
               
355-498
               

               
Cow position:
               
chr6:21347060-21346914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
355-499
               

               
Cow position:
               
chr6:16016124-16016275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
67, 44
               

               
Conread position:
               
355-499
               

               
Cow position:
               
chr6:47989516-47989665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
70, 139
               

               
Conread position:
               
356-507
               

               
Cow position:
               
chr6:66058616-66058462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
67, 138
               

               
Conread position:
               
358-489
               

               
Cow position:
               
chr6:6117551-6117418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
361-500
               

               
Cow position:
               
chr6:43770802-43770661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
363-490
               

               
Cow position:
               
chr6:59759269-59759400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
365-498
               

               
Cow position:
               
chr6:62539502-62539369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
366-490
               

               
Cow position:
               
chr6:11262848-11262972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
367-532
               

               
Cow position:
               
chr6:30688409-30688234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
60, 152
               

               
Conread position:
               
370-506
               

               
Cow position:
               
chr6:45633886-45633749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
64, 25
               

               
Conread position:
               
372-499
               

               
Cow position:
               
chr6:54140934-54141060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
117, 0
               
Show alignments to all cow chromosomes.