Cow genome map
| Conread name: | Ss1.1-rpigcf0_007690.5 |
| Conread position: | 38-233 |
| Cow position: | chr11:12300401-12300206 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 155, 38 |
| Conread position: | 39-230 |
| Cow position: | chr11:38807883-38808068 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 42-272 |
| Cow position: | chr11:14065818-14065597 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 56-268 |
| Cow position: | chr11:46112693-46112902 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 147, 20 |
| Conread position: | 56-272 |
| Cow position: | chr11:59053651-59053444 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 70-230 |
| Cow position: | chr11:1889410-1889570 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 9, 23 |
| Conread position: | 70-270 |
| Cow position: | chr11:55151985-55151788 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 70-272 |
| Cow position: | chr11:37517423-37517222 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 161, 175 |
| Conread position: | 70-274 |
| Cow position: | chr11:50494582-50494782 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 11, 19 |
| Conread position: | 71-223 |
| Cow position: | chr11:10623573-10623722 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 71-240 |
| Cow position: | chr11:59745165-59744997 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 155, 0 |
| Conread position: | 71-245 |
| Cow position: | chr11:59031847-59031675 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 71-270 |
| Cow position: | chr11:57584905-57585103 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 71-272 |
| Cow position: | chr11:26131653-26131452 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 135, 62 |
| Conread position: | 72-245 |
| Cow position: | chr11:17090863-17091034 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 72-256 |
| Cow position: | chr11:38927031-38927212 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 87, 95 |
| Conread position: | 72-270 |
| Cow position: | chr11:15064195-15064391 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 72-272 |
| Cow position: | chr11:53456318-53456116 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 152, 0 |
| Conread position: | 73-224 |
| Cow position: | chr11:45796003-45795852 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 74-233 |
| Cow position: | chr11:12442457-12442295 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 96, 31 |
| Conread position: | 74-246 |
| Cow position: | chr11:17210766-17210937 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 42, 14 |
| Conread position: | 80-273 |
| Cow position: | chr11:39662341-39662532 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 84-241 |
| Cow position: | chr11:83406055-83405901 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 10, 70 |
| Conread position: | 84-273 |
| Cow position: | chr11:77139202-77139396 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 88-224 |
| Cow position: | chr11:49791606-49791741 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 88-272 |
| Cow position: | chr11:52006774-52006957 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 88-274 |
| Cow position: | chr11:45352021-45351834 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 24, 16 |
| Conread position: | 107-288 |
| Cow position: | chr11:75645862-75646044 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 170, 54 |
Show alignments to all cow chromosomes.