Cow genome map
| Conread name: | Ss1.1-rpigcf0_007690.5 |
| Conread position: | 34-260 |
| Cow position: | chr13:6176716-6176483 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 37-270 |
| Cow position: | chr13:61597213-61597448 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 16, 53 |
| Conread position: | 41-220 |
| Cow position: | chr13:4391843-4391664 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 25, 39 |
| Conread position: | 46-224 |
| Cow position: | chr13:980499-980320 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 9, 31 |
| Conread position: | 53-253 |
| Cow position: | chr13:57140809-57141010 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 53-269 |
| Cow position: | chr13:10103494-10103707 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 94, 37 |
| Conread position: | 56-244 |
| Cow position: | chr13:36603926-36604113 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 10, 76 |
| Conread position: | 56-254 |
| Cow position: | chr13:40324154-40324349 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 101, 20 |
| Conread position: | 56-272 |
| Cow position: | chr13:59643962-59644177 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 56-274 |
| Cow position: | chr13:61286452-61286245 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 60-209 |
| Cow position: | chr13:46803610-46803761 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 65-269 |
| Cow position: | chr13:34264182-34263980 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 69-260 |
| Cow position: | chr13:49628122-49628307 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 52, 10 |
| Conread position: | 71-217 |
| Cow position: | chr13:58225770-58225914 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 11, 62 |
| Conread position: | 71-218 |
| Cow position: | chr13:10751283-10751134 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 71-268 |
| Cow position: | chr13:61810745-61810939 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 56, 17 |
| Conread position: | 71-270 |
| Cow position: | chr13:50453240-50453050 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 174, 57 |
| Conread position: | 71-272 |
| Cow position: | chr13:165787-165989 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 76, 124 |
| Conread position: | 71-272 |
| Cow position: | chr13:58788684-58788880 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 71-272 |
| Cow position: | chr13:59601014-59600817 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 49, 36 |
| Conread position: | 72-254 |
| Cow position: | chr13:39847601-39847424 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 72-270 |
| Cow position: | chr13:4424975-4424778 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 175, 145 |
| Conread position: | 72-272 |
| Cow position: | chr13:16831594-16831790 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 185, 20 |
| Conread position: | 72-272 |
| Cow position: | chr13:37107038-37107240 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 73-235 |
| Cow position: | chr13:39040087-39040248 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 73-256 |
| Cow position: | chr13:40842036-40841856 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 74-268 |
| Cow position: | chr13:36351680-36351491 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 80-269 |
| Cow position: | chr13:4117793-4117980 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 80-272 |
| Cow position: | chr13:46707916-46707728 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 78, 66 |
| Conread position: | 83-270 |
| Cow position: | chr13:61346308-61346494 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 34, 60 |
| Conread position: | 84-255 |
| Cow position: | chr13:7839945-7840115 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 147, 35 |
| Conread position: | 86-272 |
| Cow position: | chr13:6051031-6051217 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 88-268 |
| Cow position: | chr13:62145828-62146005 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 88-270 |
| Cow position: | chr13:53626367-53626185 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 7, 161 |
| Conread position: | 88-271 |
| Cow position: | chr13:26403517-26403700 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 90-212 |
| Cow position: | chr13:37787796-37787675 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 95-250 |
| Cow position: | chr13:18929922-18930077 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 114 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 28, 78 |
| Conread position: | 95-272 |
| Cow position: | chr13:34279810-34279633 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 52, 164 |
| Conread position: | 98-270 |
| Cow position: | chr13:54192975-54192803 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 120 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.