Cow genome map
| Conread name: | Ss1.1-rpigcf0_007690.5 |
| Conread position: | 45-273 |
| Cow position: | chrX:39130262-39130482 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 80, 7 |
| Conread position: | 48-220 |
| Cow position: | chrX:38117123-38116952 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 52-229 |
| Cow position: | chrX:5451446-5451625 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 55-272 |
| Cow position: | chrX:44625648-44625863 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 56-220 |
| Cow position: | chrX:38171469-38171630 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 56-242 |
| Cow position: | chrX:23139381-23139567 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 56-246 |
| Cow position: | chrX:4193364-4193175 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 122, 30 |
| Conread position: | 56-250 |
| Cow position: | chrX:42292117-42291923 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 10, 31 |
| Conread position: | 56-270 |
| Cow position: | chrX:17673592-17673806 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 10, 27 |
| Conread position: | 56-271 |
| Cow position: | chrX:38203244-38203034 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 189, 34 |
| Conread position: | 56-271 |
| Cow position: | chrX:41998907-41999120 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 191, 20 |
| Conread position: | 56-272 |
| Cow position: | chrX:7348278-7348065 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 56-273 |
| Cow position: | chrX:42028645-42028433 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 10, 24 |
| Conread position: | 56-273 |
| Cow position: | chrX:43324017-43323802 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 52, 20 |
| Conread position: | 57-268 |
| Cow position: | chrX:31780829-31781038 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 9, 26 |
| Conread position: | 58-234 |
| Cow position: | chrX:37242100-37241926 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 8, 32 |
| Conread position: | 58-239 |
| Cow position: | chrX:18740427-18740606 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 59-272 |
| Cow position: | chrX:7464377-7464162 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 66, 9 |
| Conread position: | 68-269 |
| Cow position: | chrX:44028688-44028483 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 96, 43 |
| Conread position: | 69-224 |
| Cow position: | chrX:16322913-16323074 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 71-220 |
| Cow position: | chrX:40289657-40289512 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 107, 36 |
| Conread position: | 71-245 |
| Cow position: | chrX:42018835-42019004 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 71-251 |
| Cow position: | chrX:24025192-24025015 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 71-269 |
| Cow position: | chrX:46228398-46228200 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 162, 151 |
| Conread position: | 71-271 |
| Cow position: | chrX:17050054-17049858 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 46, 51 |
| Conread position: | 71-272 |
| Cow position: | chrX:33205808-33206007 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 41, 29 |
| Conread position: | 71-272 |
| Cow position: | chrX:41193502-41193702 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 72-268 |
| Cow position: | chrX:46084260-46084453 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 189, 19 |
| Conread position: | 72-272 |
| Cow position: | chrX:39501485-39501286 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 40, 100 |
| Conread position: | 74-270 |
| Cow position: | chrX:38869357-38869552 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 43, 49 |
| Conread position: | 80-270 |
| Cow position: | chrX:15017826-15018014 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 87-274 |
| Cow position: | chrX:38754086-38754273 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 159, 147 |
| Conread position: | 95-272 |
| Cow position: | chrX:39167504-39167678 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 12, 128 |
| Conread position: | 106-270 |
| Cow position: | chrX:38603883-38604047 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 123-268 |
| Cow position: | chrX:41659962-41660108 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 29, 0 |
Show alignments to all cow chromosomes.