Cow genome map
| Conread name: | Ss1.1-rpigcf0_008825.5 |
| Conread position: | 2-298 |
| Cow position: | chr10:49834952-49835258 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 11, 119 |
| Conread position: | 9-272 |
| Cow position: | chr10:43262730-43262461 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 33, 91 |
| Conread position: | 9-288 |
| Cow position: | chr10:10718392-10718109 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 33, 107 |
| Conread position: | 9-298 |
| Cow position: | chr10:20202571-20202276 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 34, 11 |
| Conread position: | 9-303 |
| Cow position: | chr10:922399-922101 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 34, 100 |
| Conread position: | 9-317 |
| Cow position: | chr10:68825273-68824952 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 34, 98 |
| Conread position: | 9-319 |
| Cow position: | chr10:37309014-37309333 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 34, 119 |
| Conread position: | 9-319 |
| Cow position: | chr10:49711239-49711549 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 230 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 34, 87 |
| Conread position: | 33-295 |
| Cow position: | chr10:325842-325576 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 30, 11 |
| Conread position: | 43-268 |
| Cow position: | chr10:25264450-25264670 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 27, 13 |
| Conread position: | 43-298 |
| Cow position: | chr10:25630804-25631058 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 22, 72 |
| Conread position: | 43-314 |
| Cow position: | chr10:49185601-49185341 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 27, 41 |
| Conread position: | 43-319 |
| Cow position: | chr10:47917603-47917883 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 22, 73 |
| Conread position: | 44-324 |
| Cow position: | chr10:9949902-9950178 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 139, 40 |
| Conread position: | 56-318 |
| Cow position: | chr10:7310306-7310566 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 34, 54 |
| Conread position: | 61-292 |
| Cow position: | chr10:38843112-38843341 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 11, 37 |
| Conread position: | 87-292 |
| Cow position: | chr10:14332865-14332662 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 72, 12 |
| Conread position: | 87-292 |
| Cow position: | chr10:19141633-19141430 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 72, 10 |
| Conread position: | 87-298 |
| Cow position: | chr10:27004604-27004395 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 72, 10 |
| Conread position: | 87-298 |
| Cow position: | chr10:31022079-31021870 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 72, 21 |
| Conread position: | 87-298 |
| Cow position: | chr10:47909593-47909802 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 55, 10 |
| Conread position: | 87-298 |
| Cow position: | chr10:50451533-50451742 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 55, 10 |
| Conread position: | 87-298 |
| Cow position: | chr10:52738833-52739042 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 118, 8 |
| Conread position: | 87-319 |
| Cow position: | chr10:1662991-1662761 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 59, 10 |
| Conread position: | 87-319 |
| Cow position: | chr10:26292511-26292283 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 118, 11 |
| Conread position: | 87-319 |
| Cow position: | chr10:37139328-37139098 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 72, 21 |
| Conread position: | 88-298 |
| Cow position: | chr10:37126240-37126032 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 71, 9 |
| Conread position: | 110-320 |
| Cow position: | chr10:38866201-38866405 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 94, 5 |
| Conread position: | 111-319 |
| Cow position: | chr10:33219190-33218983 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 94, 158 |
| Conread position: | 113-320 |
| Cow position: | chr10:35551693-35551893 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 98, 127 |
| Conread position: | 174-588 |
| Cow position: | chr10:4605801-4605387 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 247, 297 |
| Conread position: | 406-552 |
| Cow position: | chr10:15824145-15824002 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 25, 82 |
| Conread position: | 406-585 |
| Cow position: | chr10:62629717-62629889 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 407-561 |
| Cow position: | chr10:54342921-54342765 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 15, 51 |
| Conread position: | 407-579 |
| Cow position: | chr10:15618056-15617893 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 33, 78 |
| Conread position: | 407-583 |
| Cow position: | chr10:31220545-31220722 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 96, 171 |
| Conread position: | 407-584 |
| Cow position: | chr10:16668960-16668783 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 407-585 |
| Cow position: | chr10:4013670-4013841 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 407-586 |
| Cow position: | chr10:19128419-19128231 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 407-586 |
| Cow position: | chr10:21477360-21477538 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 31, 47 |
| Conread position: | 407-587 |
| Cow position: | chr10:11276053-11276228 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 26, 137 |
| Conread position: | 407-588 |
| Cow position: | chr10:3318260-3318444 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 152 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 407-588 |
| Cow position: | chr10:22455580-22455749 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 407-588 |
| Cow position: | chr10:23879771-23879595 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 407-588 |
| Cow position: | chr10:25536412-25536598 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 151 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 407-588 |
| Cow position: | chr10:37428302-37428122 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 112, 34 |
| Conread position: | 407-588 |
| Cow position: | chr10:52131949-52132127 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 26, 85 |
| Conread position: | 407-588 |
| Cow position: | chr10:68203705-68203527 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 24, 143 |
| Conread position: | 408-561 |
| Cow position: | chr10:49280132-49279976 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 16, 34 |
| Conread position: | 408-583 |
| Cow position: | chr10:41638173-41638351 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 23, 92 |
| Conread position: | 408-583 |
| Cow position: | chr10:60244002-60244174 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 408-588 |
| Cow position: | chr10:24609165-24609350 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 408-588 |
| Cow position: | chr10:25008818-25008643 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 408-588 |
| Cow position: | chr10:30320800-30320974 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 408-588 |
| Cow position: | chr10:45195747-45195929 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 23, 65 |
| Conread position: | 409-584 |
| Cow position: | chr10:63621485-63621313 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 22, 49 |
| Conread position: | 409-588 |
| Cow position: | chr10:37665201-37665024 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 147 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 27, 47 |
| Conread position: | 410-574 |
| Cow position: | chr10:28565746-28565592 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 410-586 |
| Cow position: | chr10:18863254-18863431 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 11, 81 |
| Conread position: | 410-588 |
| Cow position: | chr10:767401-767228 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 79, 17 |
| Conread position: | 410-588 |
| Cow position: | chr10:5421995-5421814 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 150 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 411-565 |
| Cow position: | chr10:4994044-4993892 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 9, 120 |
| Conread position: | 414-528 |
| Cow position: | chr10:48193308-48193192 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 92 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 416-576 |
| Cow position: | chr10:17513492-17513339 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 416-582 |
| Cow position: | chr10:22859778-22859612 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 78, 133 |
| Conread position: | 416-588 |
| Cow position: | chr10:35182081-35182253 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 138 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 418-579 |
| Cow position: | chr10:67051286-67051445 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 17, 32 |
| Conread position: | 424-588 |
| Cow position: | chr10:2711336-2711174 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 91, 25 |
| Conread position: | 427-588 |
| Cow position: | chr10:55437618-55437464 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 50, 118 |
| Conread position: | 431-588 |
| Cow position: | chr10:55874152-55874305 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 432-584 |
| Cow position: | chr10:21563409-21563560 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 432-586 |
| Cow position: | chr10:12199428-12199580 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 9, 97 |
| Conread position: | 432-586 |
| Cow position: | chr10:28508832-28508673 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 440-586 |
| Cow position: | chr10:3855142-3855286 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 14, 57 |
| Conread position: | 441-588 |
| Cow position: | chr10:30708722-30708576 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 84, 122 |
| Conread position: | 441-588 |
| Cow position: | chr10:33995580-33995432 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 65, 9 |
| Conread position: | 445-588 |
| Cow position: | chr10:48208238-48208095 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 450-588 |
| Cow position: | chr10:43060669-43060532 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 81, 59 |
| Conread position: | 450-588 |
| Cow position: | chr10:53374879-53374742 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 452-585 |
| Cow position: | chr10:30358051-30357918 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 452-588 |
| Cow position: | chr10:50964150-50964288 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 462-588 |
| Cow position: | chr10:46010276-46010150 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 474-588 |
| Cow position: | chr10:45651174-45651288 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 90 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 490-587 |
| Cow position: | chr10:27224191-27224288 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 88 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.