Cow genome map

Conread name: Ss1.1-rpigcf0_008825.5

Conread position: 9-319
Cow position: chr11:62871640-62871325 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 223
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 34, 76

Conread position: 9-319
Cow position: chr11:76602461-76602781 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 225
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 34, 114

Conread position: 10-274
Cow position: chr11:4884194-4883918 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 189
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 33, 114

Conread position: 15-298
Cow position: chr11:35231157-35231449 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 207
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 27, 101

Conread position: 29-229
Cow position: chr11:24248274-24248479 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 154
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 35, 87

Conread position: 32-319
Cow position: chr11:84740629-84740920 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 199
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 31, 11

Conread position: 43-273
Cow position: chr11:50557270-50557046 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 160
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 48, 29

Conread position: 43-286
Cow position: chr11:81847657-81847900 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 170
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 47, 85

Conread position: 43-298
Cow position: chr11:6343023-6343283 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 181
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 20, 62

Conread position: 43-298
Cow position: chr11:35142769-35142509 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 177
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 30, 41

Conread position: 43-319
Cow position: chr11:7680526-7680807 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 185
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 20, 66

Conread position: 54-318
Cow position: chr11:41621546-41621811 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 188
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 12, 157

Conread position: 69-273
Cow position: chr11:39427827-39427625 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 146
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 22, 43

Conread position: 87-290
Cow position: chr11:84966728-84966929 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 143
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 55, 10

Conread position: 87-291
Cow position: chr11:43511357-43511155 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 142
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 72, 10

Conread position: 87-292
Cow position: chr11:56462976-56463179 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 143
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 72, 12

Conread position: 87-298
Cow position: chr11:17105075-17104866 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 146
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 72, 10

Conread position: 87-298
Cow position: chr11:17548772-17548981 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 142
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 118, 10

Conread position: 87-298
Cow position: chr11:20731608-20731399 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 145
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 59, 10

Conread position: 87-298
Cow position: chr11:28125129-28125338 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 146
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 72, 21

Conread position: 87-298
Cow position: chr11:30201078-30200870 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 146
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 118, 10

Conread position: 87-298
Cow position: chr11:35542454-35542245 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 149
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 72, 21

Conread position: 87-298
Cow position: chr11:50511058-50510849 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 147
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 55, 21

Conread position: 87-319
Cow position: chr11:12317456-12317226 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 158
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 72, 10

Conread position: 87-319
Cow position: chr11:33602014-33601783 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 157
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 72, 10

Conread position: 88-291
Cow position: chr11:67920717-67920516 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 142
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 71, 9

Conread position: 111-298
Cow position: chr11:2285348-2285536 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 133
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 48, 41

Conread position: 111-298
Cow position: chr11:29614027-29614215 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 132
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 48, 41

Conread position: 403-588
Cow position: chr11:87168388-87168213 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 135
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 20, 0

Conread position: 405-546
Cow position: chr11:35284489-35284627 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 113
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 34, 0

Conread position: 406-587
Cow position: chr11:39830830-39830665 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 137
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 26, 0

Conread position: 406-588
Cow position: chr11:34397871-34398053 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 145
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 8, 87

Conread position: 406-588
Cow position: chr11:44064274-44064459 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 145
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 25, 0

Conread position: 407-543
Cow position: chr11:81987723-81987586 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 110
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 25, 53

Conread position: 407-551
Cow position: chr11:9192742-9192604 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 113
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 17, 0

Conread position: 407-560
Cow position: chr11:40574378-40574226 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 125
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 150, 38

Conread position: 407-564
Cow position: chr11:10877647-10877802 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 122
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 153, 79

Conread position: 407-571
Cow position: chr11:58793614-58793450 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 129
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 24, 84

Conread position: 407-581
Cow position: chr11:34265822-34265990 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 134
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 31, 36

Conread position: 407-581
Cow position: chr11:34303862-34304030 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 134
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 32, 0

Conread position: 407-583
Cow position: chr11:77772298-77772132 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 138
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 6, 0

Conread position: 407-587
Cow position: chr11:18452752-18452581 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 140
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 34, 0

Conread position: 407-587
Cow position: chr11:21909744-21909561 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 148
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 26, 10

Conread position: 407-587
Cow position: chr11:43855837-43855660 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 140
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 26, 96

Conread position: 407-588
Cow position: chr11:17054052-17053871 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 130
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 33, 51

Conread position: 407-588
Cow position: chr11:19567431-19567602 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 143
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 24, 53

Conread position: 407-588
Cow position: chr11:22851434-22851612 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 151
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 24, 68

Conread position: 407-588
Cow position: chr11:25807343-25807163 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 146
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 20, 0

Conread position: 407-588
Cow position: chr11:30660680-30660865 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 148
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 24, 0

Conread position: 407-588
Cow position: chr11:38009619-38009445 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 134
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 20, 0

Conread position: 407-588
Cow position: chr11:55119862-55120040 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 142
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 32, 0

Conread position: 407-588
Cow position: chr11:57752985-57752805 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 135
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 70, 0

Conread position: 408-530
Cow position: chr11:57062259-57062377 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 31, 0

Conread position: 408-586
Cow position: chr11:27817121-27816948 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 135
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 30, 0

Conread position: 408-588
Cow position: chr11:3261108-3261281 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 139
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 31, 0

Conread position: 408-588
Cow position: chr11:64101441-64101624 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 144
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 24, 147

Conread position: 409-539
Cow position: chr11:77756366-77756232 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 16, 87

Conread position: 409-556
Cow position: chr11:27610824-27610970 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 115
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 71, 30

Conread position: 409-586
Cow position: chr11:25972547-25972374 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 142
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 153, 23

Conread position: 409-586
Cow position: chr11:55283133-55282944 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 139
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 25, 0

Conread position: 409-588
Cow position: chr11:15374178-15374351 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 141
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 24, 61

Conread position: 409-588
Cow position: chr11:82529256-82529450 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 148
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 24, 0

Conread position: 410-554
Cow position: chr11:8087762-8087623 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 115
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 28, 47

Conread position: 410-588
Cow position: chr11:5221033-5220863 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 140
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 14, 0

Conread position: 410-588
Cow position: chr11:29785510-29785682 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 138
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 17, 32

Conread position: 411-564
Cow position: chr11:57153265-57153109 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 122
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 28, 0

Conread position: 411-579
Cow position: chr11:15885692-15885862 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 132
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 22, 0

Conread position: 411-584
Cow position: chr11:53755174-53754996 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 134
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 29, 45

Conread position: 412-588
Cow position: chr11:74171217-74171045 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 137
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 27, 75

Conread position: 413-568
Cow position: chr11:15106405-15106245 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 18, 0

Conread position: 413-571
Cow position: chr11:39166579-39166740 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 118
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 20, 99

Conread position: 413-585
Cow position: chr11:69491817-69491980 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 132
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 19, 45

Conread position: 416-588
Cow position: chr11:15265417-15265251 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 126
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 33, 0

Conread position: 420-587
Cow position: chr11:34024944-34025104 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 139
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 13, 74

Conread position: 421-583
Cow position: chr11:9065928-9065763 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 121
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 58, 18

Conread position: 424-583
Cow position: chr11:462678-462838 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 124
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 19, 0

Conread position: 427-588
Cow position: chr11:16363979-16363819 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 140
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 91, 5

Conread position: 432-587
Cow position: chr11:1774468-1774313 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 121
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 433-588
Cow position: chr11:9424407-9424559 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 121
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 80, 0

Conread position: 438-588
Cow position: chr11:77763096-77762948 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 115
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 93, 29

Conread position: 440-588
Cow position: chr11:85005852-85006003 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 119
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 49, 9

Conread position: 441-568
Cow position: chr11:77477846-77477722 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 102
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 100, 0

Conread position: 441-568
Cow position: chr11:77478520-77478396 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 102
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 100, 0

Conread position: 441-576
Cow position: chr11:12791194-12791325 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 26, 0

Conread position: 441-582
Cow position: chr11:54204401-54204261 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 117
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 129, 0

Conread position: 444-588
Cow position: chr11:80780553-80780696 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 117
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 93, 0

Conread position: 445-588
Cow position: chr11:53663557-53663697 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 108
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 91, 0

Conread position: 448-587
Cow position: chr11:20998570-20998716 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 114
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 68, 0

Conread position: 450-588
Cow position: chr11:65777333-65777195 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 105
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 452-588
Cow position: chr11:53331219-53331356 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 112
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 89, 0

Conread position: 467-582
Cow position: chr11:73007318-73007433 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 93
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 505-588
Cow position: chr11:13564356-13564439 (view UCSC Genome Browser custom track)
Alignm length: 84
Alignm identity: 74
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.